Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR166960 Cardamine hirsuta HOM05D009749 ORTHO05D008033 3.0e-182 641.7 333 100.0
AT3G56810 Arabidopsis thaliana HOM05D009749 ORTHO05D008033 1.6e-138 496.5 342 80.1
AL5G38190 Arabidopsis lyrata HOM05D009749 ORTHO05D008033 5.6e-136 488.0 341 80.4
Sp5g05780 Schrenkiella parvula HOM05D009749 ORTHO05D008033 1.6e-130 469.9 343 77.0
A04p03560 Brassica napus HOM05D009749 ORTHO05D008033 2.5e-120 436.0 339 71.4
C08p32040 Brassica napus HOM05D009749 ORTHO05D008033 3.3e-120 435.6 342 72.8
Carub.0005s2354 Capsella rubella HOM05D009749 ORTHO05D008033 9.7e-120 434.1 343 72.9
BcaC07g39991 Brassica carinata HOM05D009749 ORTHO05D008033 4.8e-119 431.8 342 72.5
BolC8t50822H Brassica oleracea HOM05D009749 ORTHO05D008033 4.8e-119 431.8 342 72.5
A09p49630 Brassica napus HOM05D009749 ORTHO05D008033 1.4e-118 430.3 342 71.3
C04p35700 Brassica napus HOM05D009749 ORTHO05D008033 1.4e-118 430.3 340 71.2
BraA09t40416Z Brassica rapa HOM05D009749 ORTHO05D008033 1.4e-118 430.3 342 71.3
BolC4t25234H Brassica oleracea HOM05D009749 ORTHO05D008033 2.6e-117 426.0 349 69.9
BcaB02g08346 Brassica carinata HOM05D009749 ORTHO05D008033 1.4e-113 413.7 337 69.4
BcaB02g07636 Brassica carinata HOM05D009749 ORTHO05D008033 1.7e-111 406.8 336 70.5
BolC6t37547H Brassica oleracea HOM05D009749 ORTHO05D008033 2.8e-111 406.0 342 70.8
BcaC08g44807 Brassica carinata HOM05D009749 ORTHO05D008033 1.5e-109 400.2 340 70.0
C06p23780 Brassica napus HOM05D009749 ORTHO05D008033 1.3e-108 397.1 339 69.0
BraA04t16080Z Brassica rapa HOM05D009749 ORTHO05D008033 5.0e-108 395.2 343 66.5
A07p23080 Brassica napus HOM05D009749 ORTHO05D008033 2.1e-106 389.8 346 68.2
BraA07t29970Z Brassica rapa HOM05D009749 ORTHO05D008033 2.1e-106 389.8 346 68.2
BcaC07g40118 Brassica carinata HOM05D009749 ORTHO05D008033 2.2e-100 369.8 343 65.3
BcaC02g09872 Brassica carinata HOM05D009749 ORTHO05D008033 2.4e-78 296.6 267 65.2
Thhalv10006250m.g Eutrema salsugineum HOM05D009749 ORTHO05D008033 1.9e-59 233.8 188 68.6
THA.LOC104803305 Tarenaya hassleriana HOM05D009749 ORTHO05D008033 1.8e-57 227.3 331 48.0
Thhalv10006450m.g Eutrema salsugineum HOM05D009749 ORTHO05D008033 5.4e-54 215.7 154 81.2
Aa31LG10G11650 Aethionema arabicum HOM05D009749 ORTHO05D008033 2.9e-39 166.8 140 68.6
Haze_20347 Corylus avellana HOM05D007667 ORTHO05D008033 6.5e-15 85.9 309 25.9
PGR142G2092 Punica granatum HOM05D007667 ORTHO05D008033 3.5e-13 80.1 365 25.2
Atru.chr8.918 Acer truncatum HOM05D007667 ORTHO05D008033 1.0e-12 78.6 355 28.7
MD12G1111200 Malus domestica HOM05D007667 ORTHO05D008033 3.9e-12 76.6 264 28.0
Eucgr.K01702 Eucalyptus grandis HOM05D007667 ORTHO05D008033 5.1e-12 76.3 92 45.7
Cfa019904 Carpinus fangiana HOM05D007667 ORTHO05D008033 6.7e-12 75.9 377 25.5
Manes.08G067300 Manihot esculenta HOM05D007667 ORTHO05D008033 8.7e-12 75.5 233 29.6
GSVIVG01025830001 Vitis vinifera HOM05D007667 ORTHO05D008033 1.1e-11 75.1 303 24.4
arahy.Tifrunner.gnm1.ann1.B2YDCU Arachis hypogaea HOM05D007667 ORTHO05D008033 5.7e-11 72.8 351 25.4
Sabra16G0030500 Salix brachista HOM05D007667 ORTHO05D008033 1.6e-10 71.2 302 25.8
arahy.Tifrunner.gnm1.ann1.2JVN0K Arachis hypogaea HOM05D007667 ORTHO05D008033 4.8e-10 69.7 350 24.3
CSS0027019 Camellia sinensis var. sinensis HOM05D007667 ORTHO05D008033 4.8e-10 69.7 278 28.1
Glyma.19G122200 Glycine max HOM05D007667 ORTHO05D008033 4.8e-10 69.7 324 26.5
Medtr7g087970 Medicago truncatula HOM05D007667 ORTHO05D008033 8.2e-10 68.9 244 27.0
Glyma.03G003800 Glycine max HOM05D007667 ORTHO05D008033 1.1e-09 68.6 240 27.5
CiPaw.09G161700 Carya illinoinensis HOM05D007667 ORTHO05D008033 1.8e-09 67.8 403 24.6
COL.COLO4_22773 Corchorus olitorius HOM05D007667 ORTHO05D008033 1.8e-09 67.8 326 25.5
Phvul.001G101500 Phaseolus vulgaris HOM05D007667 ORTHO05D008033 2.4e-09 67.4 384 23.4
Psat0s3111g0200 Pisum sativum HOM05D007667 ORTHO05D008033 3.1e-09 67.0 247 28.7
Potri.016G024600 Populus trichocarpa HOM05D007667 ORTHO05D008033 3.1e-09 67.0 203 30.0
VMungo1383G2866 Vigna mungo HOM05D007667 ORTHO05D008033 3.1e-09 67.0 296 25.0
SalBow6G3030 Salvia bowleyana HOM05D007667 ORTHO05D008033 4.1e-09 66.6 93 39.8
SalBow6G3731 Salvia bowleyana HOM05D007667 ORTHO05D008033 4.1e-09 66.6 93 39.8
Sabra06G0019700 Salix brachista HOM05D007667 ORTHO05D008033 5.3e-09 66.2 198 31.8
Duzib128G0300 Durio zibethinus HOM05D007667 ORTHO05D008033 1.5e-08 64.7 92 41.3
CANSAT01G1982 Cannabis sativa HOM05D007667 ORTHO05D008033 2.6e-08 63.9 256 24.6
TAR623G0652 Trochodendron aralioides HOM05D007667 ORTHO05D008033 4.5e-08 63.2 320 25.0
vmacro07594 Vaccinium macrocarpon HOM05D007667 ORTHO05D008033 5.8e-08 62.8 242 26.9
RhsimUnG0021200 Rhododendron simsii HOM05D007667 ORTHO05D008033 7.6e-08 62.4 237 25.3
Potri.006G026600 Populus trichocarpa HOM05D007667 ORTHO05D008033 1.0e-07 62.0 197 27.4
DCAR_020622 Daucus carota HOM05D007667 ORTHO05D008033 1.3e-07 61.6 105 34.3
Thecc.05G130400 Theobroma cacao HOM05D007667 ORTHO05D008033 1.3e-07 61.6 93 37.6
RcHm_v2.0_Chr3g0495051 Rosa chinensis HOM05D007667 ORTHO05D008033 2.2e-07 60.8 246 26.4
MSTRG.6277 Avicennia marina HOM05D007667 ORTHO05D008033 3.8e-07 60.1 93 39.8
Oeu041986.1 Olea europaea HOM05D007667 ORTHO05D008033 3.8e-07 60.1 239 25.5
Lalb_Chr14g0365211 Lupinus albus HOM05D007667 ORTHO05D008033 6.5e-07 59.3 244 25.8
SGA_v2.0_scaffold66G22329 Striga asiatica HOM05D007667 ORTHO05D008033 6.5e-07 59.3 294 22.1
TPR.G23684 Trifolium pratense HOM05D007667 ORTHO05D008033 6.5e-07 59.3 345 25.5
Ciclev10012153m.g Citrus clementina HOM05D007667 ORTHO05D008033 8.4e-07 58.9 341 24.6
Lj1g0016001 Lotus japonicus HOM05D007667 ORTHO05D008033 1.1e-06 58.5 240 25.0
TWI77G1010 Tripterygium wilfordii HOM05D007667 ORTHO05D008033 1.1e-06 58.5 306 26.5
Migut.J01575 Erythranthe guttata HOM05D007667 ORTHO05D008033 1.4e-06 58.2 277 24.9
Aqoxy3G03841 Aquilegia oxysepala HOM05D007667 ORTHO05D008033 3.2e-06 57.0 370 23.8
Sed0012185 Sechium edule HOM05D007667 ORTHO05D008033 3.2e-06 57.0 319 23.5
ClCG10G016970 Citrullus lanatus HOM05D007667 ORTHO05D008033 7.2e-06 55.8 245 25.7
MELO3C030720.2 Cucumis melo HOM05D007667 ORTHO05D008033 7.2e-06 55.8 244 25.8
Oeu060747.1 Olea europaea HOM05D007667 ORTHO05D008033 7.2e-06 55.8 371 25.1


User provided reference genes

Program Settings