Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR163560 Cardamine hirsuta HOM05D004429 ORTHO05D005583 3.5e-106 388.3 194 100.0
Thhalv10010743m.g Eutrema salsugineum HOM05D004429 ORTHO05D005583 1.2e-98 363.2 194 93.3
Sp5g08720 Schrenkiella parvula HOM05D004429 ORTHO05D005583 1.8e-97 359.4 194 91.8
AL5G34580 Arabidopsis lyrata HOM05D004429 ORTHO05D005583 2.3e-97 359.0 195 93.3
Carub.0005s2021 Capsella rubella HOM05D004429 ORTHO05D005583 3.3e-96 355.1 196 93.9
AT3G53630 Arabidopsis thaliana HOM05D004429 ORTHO05D005583 7.4e-96 354.0 196 93.4
THA.LOC104806580 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 1.7e-84 316.2 203 80.8
BraA09t40127Z Brassica rapa HOM05D004429 ORTHO05D005583 2.7e-82 308.9 195 81.0
Aa31LG5G22900 Aethionema arabicum HOM05D004429 ORTHO05D005583 1.0e-81 307.0 201 78.1
BolC8t50499H Brassica oleracea HOM05D004429 ORTHO05D005583 1.4e-81 306.6 195 82.1
A09p46640 Brassica napus HOM05D004429 ORTHO05D005583 8.8e-81 303.9 194 81.4
Aa31LG10G9470 Aethionema arabicum HOM05D004429 ORTHO05D005583 4.4e-80 301.6 185 82.2
BcaB02g08517 Brassica carinata HOM05D004429 ORTHO05D005583 7.4e-80 300.8 197 80.7
BcaB01g00258 Brassica carinata HOM05D004429 ORTHO05D005583 7.0e-78 294.3 197 78.7
BcaC02g09143 Brassica carinata HOM05D004429 ORTHO05D005583 7.0e-78 294.3 198 78.3
BolC4t25460H Brassica oleracea HOM05D004429 ORTHO05D005583 7.0e-78 294.3 197 78.2
C04p38880 Brassica napus HOM05D001071 ORTHO05D005583 9.1e-78 293.9 196 78.6
C08p28960 Brassica napus HOM05D004429 ORTHO05D005583 1.6e-77 293.1 195 80.0
BraA04t16299Z Brassica rapa HOM05D001071 ORTHO05D005583 1.6e-77 293.1 197 79.2
THA.LOC104823424 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 1.6e-77 293.1 198 75.8
BcaC07g39724 Brassica carinata HOM05D004429 ORTHO05D005583 2.0e-77 292.7 196 79.6
A04p05960 Brassica napus HOM05D004429 ORTHO05D005583 7.7e-77 290.8 197 78.7
CiPaw.10G142900 Carya illinoinensis HOM05D004429 ORTHO05D005583 2.9e-68 262.3 196 69.4
Prupe.6G250000 Prunus persica HOM05D004429 ORTHO05D005583 5.5e-67 258.1 201 65.2
Dinv37207 Davidia involucrata HOM05D004429 ORTHO05D005583 6.1e-66 254.6 196 64.8
ClCG10G020910 Citrullus lanatus HOM05D004429 ORTHO05D005583 3.4e-64 248.8 200 63.0
CSS0012060 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 3.7e-63 245.4 199 64.3
MD12G1138000 Malus domestica HOM05D004429 ORTHO05D005583 4.8e-63 245.0 199 62.3
MELO3C009280.2 Cucumis melo HOM05D004429 ORTHO05D005583 1.4e-62 243.4 200 61.0
CsaV3_3G035100 Cucumis sativus L. HOM05D004429 ORTHO05D005583 1.8e-62 243.0 205 59.5
Manes.12G146400 Manihot esculenta HOM05D004429 ORTHO05D005583 3.1e-62 242.3 198 63.1
QL07p047160 Quercus lobata HOM05D004429 ORTHO05D005583 9.1e-62 240.7 208 62.0
QL05p010485 Quercus lobata HOM05D004429 ORTHO05D005583 1.6e-61 240.0 204 61.3
Thecc.05G044800 Theobroma cacao HOM05D004429 ORTHO05D005583 2.0e-61 239.6 195 63.1
Hma1.2p1_0350F.1_g132400 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 5.9e-61 238.0 200 62.0
Hma1.2p1_1065F.1_g253770 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 5.9e-61 238.0 200 62.0
MD04G1120700 Malus domestica HOM05D004429 ORTHO05D005583 5.9e-61 238.0 206 60.7
Duzib106G0640 Durio zibethinus HOM05D004429 ORTHO05D005583 5.0e-60 235.0 207 59.9
Cc06_g03000 Coffea canephora HOM05D004429 ORTHO05D005583 1.9e-59 233.0 216 58.8
COL.COLO4_14858 Corchorus olitorius HOM05D004429 ORTHO05D005583 2.5e-59 232.6 209 59.8
TWI53G0393 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 3.2e-59 232.3 201 62.2
GSVIVG01025623001 Vitis vinifera HOM05D004429 ORTHO05D005583 3.2e-59 232.3 198 61.6
Gohir.A09G158500 Gossypium hirsutum HOM05D004429 ORTHO05D005583 5.5e-59 231.5 200 63.0
TWI74G1196 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 5.5e-59 231.5 203 61.6
Gorai.006G175400 Gossypium raimondii HOM05D004429 ORTHO05D005583 9.4e-59 230.7 199 60.8
Gohir.D11G344900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 6.1e-58 228.0 201 59.2
Gorai.007G375300 Gossypium raimondii HOM05D004429 ORTHO05D005583 6.1e-58 228.0 201 59.2
PSO339G1692 Papaver somniferum HOM05D004429 ORTHO05D005583 1.0e-57 227.3 214 58.9
Gohir.D09G153900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 1.4e-57 226.9 197 60.9
Potri.006G082400 Populus trichocarpa HOM05D004429 ORTHO05D005583 1.4e-57 226.9 203 60.6
Gohir.A11G326000 Gossypium hirsutum HOM05D004429 ORTHO05D005583 2.3e-57 226.1 201 59.2
PGR004G1112 Punica granatum HOM05D004429 ORTHO05D005583 4.0e-57 225.3 217 59.9
PSO648G0090 Papaver somniferum HOM05D004429 ORTHO05D005583 5.2e-57 224.9 214 58.4
Ciclev10013673m.g Citrus clementina HOM05D004429 ORTHO05D005583 8.8e-57 224.2 207 60.4
FAN02G4491 Fragaria x ananassa HOM05D004429 ORTHO05D005583 8.8e-57 224.2 198 59.6
FvH4_6g14340 Fragaria vesca HOM05D004429 ORTHO05D005583 1.5e-56 223.4 199 58.8
FAN14G5191 Fragaria x ananassa HOM05D004429 ORTHO05D005583 1.5e-56 223.4 199 58.8
Sed0001771 Sechium edule HOM05D004429 ORTHO05D005583 4.4e-56 221.9 210 55.7
Sopen10g034060 Solanum pennellii HOM05D004429 ORTHO05D005583 4.4e-56 221.9 212 57.5
FAN09G1286 Fragaria x ananassa HOM05D004429 ORTHO05D005583 7.5e-56 221.1 197 58.9
Sabra06G0062200 Salix brachista HOM05D004429 ORTHO05D005583 7.5e-56 221.1 190 60.5
Duzib128G1460 Durio zibethinus HOM05D004429 ORTHO05D005583 9.8e-56 220.7 201 60.2
CSS0043629 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 1.3e-55 220.3 210 55.7
DCAR_014836 Daucus carota HOM05D004429 ORTHO05D005583 2.8e-55 219.2 203 57.1
Lj2C100T9 Lonicera japonica HOM05D004429 ORTHO05D005583 4.9e-55 218.4 201 59.7
Nn2g12909 Nelumbo nucifera HOM05D004429 ORTHO05D005583 6.3e-55 218.0 197 55.8
Solyc10g084620.3 Solanum lycopersicum HOM05D004429 ORTHO05D005583 2.4e-54 216.1 208 56.7
FAN05G1703 Fragaria x ananassa HOM05D004429 ORTHO05D005583 4.1e-54 215.3 185 60.5
Nn2g10451 Nelumbo nucifera HOM05D004429 ORTHO05D005583 4.1e-54 215.3 207 55.1
CiPaw.09G188700 Carya illinoinensis HOM05D004429 ORTHO05D005583 1.6e-53 213.4 199 56.8
TAR369G0217 Trochodendron aralioides HOM05D004429 ORTHO05D005583 1.6e-53 213.4 194 58.2
CAN.G97.23 Capsicum annuum HOM05D004429 ORTHO05D005583 2.0e-53 213.0 202 57.4
ATR0222G016 Amborella trichopoda HOM05D004429 ORTHO05D005583 2.7e-53 212.6 198 56.1
Nitab4.5_0000216g0050 Nicotiana tabacum HOM05D004429 ORTHO05D005583 3.5e-53 212.2 200 58.0
Sc20g0004500 Simmondsia chinensis HOM05D004429 ORTHO05D005583 4.5e-53 211.8 202 53.0
RcHm_v2.0_Chr3g0467391 Rosa chinensis HOM05D004429 ORTHO05D005583 5.9e-53 211.5 203 57.1
AUR62013875 Chenopodium quinoa HOM05D004429 ORTHO05D005583 7.7e-53 211.1 210 55.7
Peaxi162Scf00604g00415 Petunia axillaris HOM05D004429 ORTHO05D005583 2.3e-52 209.5 210 54.8
Oeu060052.2 Olea europaea HOM05D004429 ORTHO05D005583 8.6e-52 207.6 216 53.2
Sed0027367 Sechium edule HOM05D004429 ORTHO05D005583 1.5e-51 206.8 202 55.9
Lalb_Chr20g0113181 Lupinus albus HOM05D004429 ORTHO05D005583 2.5e-51 206.1 213 52.6
Eucgr.K03161 Eucalyptus grandis HOM05D004429 ORTHO05D005583 3.3e-51 205.7 227 51.5
HanXRQChr14g0459271 Helianthus annuus HOM05D004429 ORTHO05D005583 3.3e-51 205.7 212 53.3
Solyc09g010390.2 Solanum lycopersicum HOM05D004429 ORTHO05D005583 7.3e-51 204.5 219 53.0
PGSC0003DMG400008931 Solanum tuberosum HOM05D004429 ORTHO05D005583 9.5e-51 204.1 212 54.2
EL10Ac1g02077 Beta vulgaris HOM05D004429 ORTHO05D005583 2.1e-50 203.0 198 54.0
CAN.G688.9 Capsicum annuum HOM05D004429 ORTHO05D005583 4.7e-50 201.8 214 55.1
MBI14_g36720_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 6.1e-50 201.4 213 54.5
Lsat_1_v5_gn_6_32421 Lactuca sativa HOM05D004429 ORTHO05D005583 8.0e-50 201.1 215 52.1
Oeu024364.1 Olea europaea HOM05D004429 ORTHO05D005583 1.0e-49 200.7 217 53.9
Lsat_1_v5_gn_2_110581 Lactuca sativa HOM05D004429 ORTHO05D005583 1.8e-49 199.9 211 52.6
SalBow3G1038 Salvia bowleyana HOM05D004429 ORTHO05D005583 4.0e-49 198.7 209 50.2
Glyma.19G173500 Glycine max HOM05D004429 ORTHO05D005583 6.8e-49 198.0 208 52.9
CDE04G3062 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 2.0e-48 196.4 190 53.7
Migut.J00365 Erythranthe guttata HOM05D004429 ORTHO05D005583 2.6e-48 196.1 229 48.5
SGA_v2.0_scaffold126G33824 Striga asiatica HOM05D004429 ORTHO05D005583 4.4e-48 195.3 217 51.2
Aqoxy2G02012 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 5.7e-48 194.9 211 50.7
Ah.01g015860 Amaranthus hybridus HOM05D004429 ORTHO05D005583 7.5e-48 194.5 213 50.2
MSTRG.19104 Avicennia marina HOM05D004429 ORTHO05D005583 1.3e-47 193.7 196 52.6
Glyma.03G172600 Glycine max HOM05D004429 ORTHO05D005583 1.7e-47 193.4 211 51.7
PGSC0003DMG400010996 Solanum tuberosum HOM05D004429 ORTHO05D005583 6.4e-47 191.4 164 60.4
Nitab4.5_0000202g0130 Nicotiana tabacum HOM05D004429 ORTHO05D005583 8.3e-47 191.0 178 57.9
Phvul.001G170200 Phaseolus vulgaris HOM05D004429 ORTHO05D005583 8.3e-47 191.0 206 52.4
Sopen09g005130 Solanum pennellii HOM05D004429 ORTHO05D005583 8.3e-47 191.0 203 52.7
AUR62036719 Chenopodium quinoa HOM05D004429 ORTHO05D005583 1.2e-45 187.2 204 51.0
arahy.Tifrunner.gnm1.ann1.2JSS8R Arachis hypogaea HOM05D004429 ORTHO05D005583 7.8e-45 184.5 224 49.6
Nitab4.5_0012047g0010 Nicotiana tabacum HOM05D004429 ORTHO05D005583 1.0e-44 184.1 194 52.6
SHI12608 Sapria himalayana HOM05D004429 ORTHO05D000003 3.9e-44 182.2 204 48.5
Nitab4.5_0002077g0140 Nicotiana tabacum HOM05D004429 ORTHO05D005583 1.1e-43 180.6 157 58.6
ECA233G0195 Erigeron canadensis HOM05D004429 ORTHO05D005583 4.3e-43 178.7 209 49.8
MSTRG.5688 Avicennia marina HOM05D004429 ORTHO05D005583 4.7e-42 175.3 210 44.8
Atru.chr8.1930 Acer truncatum HOM05D004429 ORTHO05D005583 1.2e-40 170.6 133 65.4
VMungo1383G1968 Vigna mungo HOM05D004429 ORTHO05D005583 9.8e-40 167.5 184 51.1
Migut.L01619 Erythranthe guttata HOM05D004429 ORTHO05D005583 1.4e-38 163.7 175 52.0
ATR0222G031 Amborella trichopoda HOM05D004429 ORTHO05D005583 5.4e-38 161.8 177 48.6
unitig_578.g15706 Utricularia gibba HOM05D004429 ORTHO05D005583 1.6e-37 160.2 204 45.1
Lj1g0006432 Lotus japonicus HOM05D004429 ORTHO05D005583 2.0e-37 159.8 213 46.0
Medtr7g099970 Medicago truncatula HOM05D004429 ORTHO05D005583 6.0e-37 158.3 199 44.2
TPR.G11987 Trifolium pratense HOM05D004429 ORTHO05D005583 7.8e-37 157.9 190 43.7
SEGI_08514 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 7.3e-35 151.4 192 44.8
HPP92_001685 Vanilla planifolia HOM05D004429 ORTHO05D005583 9.5e-35 151.0 216 42.6
COL.COLO4_24433 Corchorus olitorius HOM05D004429 ORTHO05D005583 2.8e-34 149.4 127 57.5
unitig_26.g9203 Utricularia gibba HOM05D004429 ORTHO05D005583 3.1e-33 146.0 145 51.7
Zm00001eb012690 Zea mays HOM05D004429 ORTHO05D005583 4.0e-33 145.6 218 39.4
SEGI_33598 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 6.8e-33 144.8 205 43.4
QL01p033097 Quercus lobata HOM05D004429 ORTHO05D005583 2.0e-32 143.3 190 39.5
Ca_08790_v3 Cicer arietinum L. HOM05D004429 ORTHO05D005583 4.4e-32 142.1 185 42.2
Atru.chr7.899 Acer truncatum HOM05D004429 ORTHO05D005583 2.2e-31 139.8 120 62.5
Os03g0279600 Oryza sativa ssp. japonica HOM05D004429 ORTHO05D005583 1.1e-30 137.5 213 38.5
Rhsim05G0188000 Rhododendron simsii HOM05D004429 ORTHO05D005583 4.6e-29 132.1 138 51.4
Aqoxy3G04288 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 1.0e-28 131.0 121 52.1
CDE07G1713 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 1.1e-27 127.5 185 43.2
Ciclev10029396m.g Citrus clementina HOM05D004429 ORTHO05D005583 9.5e-27 124.4 134 43.3
SGA_v2.0_scaffold87G27174 Striga asiatica HOM05D004429 ORTHO05D005583 2.1e-26 123.2 144 46.5
Haze_24041 Corylus avellana HOM05D004429 ORTHO05D005583 8.1e-26 121.3 173 38.2
Actinidia05294 Actinidia chinensis HOM05D004429 ORTHO05D005583 1.4e-25 120.6 98 63.3
Psat3g048680 Pisum sativum HOM05D004429 ORTHO05D005583 5.2e-25 118.6 197 37.6
SEGI_24259 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 3.4e-24 115.9 179 37.4
Atru.chr3.3828 Acer truncatum HOM05D004429 ORTHO05D005583 2.2e-23 113.2 170 37.6
CBR_g20121 Chara braunii HOM05D004429 ORTHO05D005583 8.4e-23 111.3 91 52.7
DCAR_017884 Daucus carota HOM05D004429 ORTHO05D005583 6.0e-21 105.1 202 34.2
MBI18_g47300_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 6.0e-21 105.1 121 52.1
Mapoly0066s0057 Marchantia polymorpha HOM05D004429 ORTHO05D005583 7.8e-21 104.8 87 55.2
SMO348G0079 Selaginella moellendorffii HOM05D004429 ORTHO05D005583 1.0e-20 104.4 133 39.8
MBI06_g43519_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 5.1e-20 102.1 121 51.2
C06p21580 Brassica napus HOM05D004429 ORTHO05D021447 1.9e-19 100.1 72 69.4
TPR.G8932 Trifolium pratense HOM05D004429 ORTHO05D005583 2.1e-18 96.7 97 48.5
BolC6t37347H Brassica oleracea HOM05D004429 ORTHO05D021447 1.4e-17 94.0 69 71.0
Pp3c4_10520 Physcomitrium patens HOM05D004429 ORTHO05D005583 1.4e-17 94.0 86 48.8
Pp3c15_19860 Physcomitrium patens HOM05D004429 ORTHO05D005583 2.0e-16 90.1 136 36.8
AT4G18692 Arabidopsis thaliana HOM05D004429 ORTHO05D021447 2.6e-16 89.7 63 81.0
Sopen04g022580 Solanum pennellii HOM05D004429 ORTHO05D005583 4.4e-16 89.0 183 36.6
AT3G53342 Arabidopsis thaliana HOM05D004429 ORTHO05D021447 7.6e-16 88.2 63 79.4
Pp3c9_19700 Physcomitrium patens HOM05D004429 ORTHO05D005583 1.3e-15 87.4 136 35.3
TPR.G14114 Trifolium pratense HOM05D004429 ORTHO05D005583 4.2e-14 82.4 111 38.7
EL10Ac5g11422 Beta vulgaris HOM05D004429 ORTHO05D005583 7.1e-14 81.6 115 47.8
AT1G55710 Arabidopsis thaliana HOM05D004429 ORTHO05D021447 1.2e-13 80.9 63 74.6
EL10Ac9g21191 Beta vulgaris HOM05D006860 ORTHO05D009547 1.3e-12 77.4 112 48.2
C03p31080 Brassica napus HOM05D004429 ORTHO05D103234 8.7e-12 74.7 55 76.4
SGA_v2.0_scaffold61G21134 Striga asiatica HOM05D004429 ORTHO05D005583 2.8e-10 69.7 165 35.2
SGA_v2.0_scaffold32G13323 Striga asiatica HOM05D004429 ORTHO05D005583 1.2e-08 64.3 103 40.8
BcaC08g44641 Brassica carinata HOM05D004429 ORTHO05D021447 2.0e-08 63.5 37 81.1


User provided reference genes

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