Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G33490 Arabidopsis lyrata HOM05D003756 ORTHO05D004304 2.7e-35 151.4 73 100.0
AT3G52730 Arabidopsis thaliana HOM05D003756 ORTHO05D004304 2.7e-35 151.4 73 100.0
Carub.0005s1918 Capsella rubella HOM05D003756 ORTHO05D004304 2.7e-35 151.4 73 100.0
CARHR162600 Cardamine hirsuta HOM05D003756 ORTHO05D004304 2.7e-35 151.4 73 100.0
THA.LOC104823490 Tarenaya hassleriana HOM05D003756 ORTHO05D004304 2.4e-31 138.3 73 89.0
THA.LOC104804928 Tarenaya hassleriana HOM05D003756 ORTHO05D004304 4.1e-31 137.5 73 89.0
Aa31LG5G21370 Aethionema arabicum HOM05D003756 ORTHO05D004304 5.3e-31 137.1 74 90.5
THA.LOC104799762 Tarenaya hassleriana HOM05D003756 ORTHO05D004304 1.3e-29 132.5 73 86.3
BcaC02g09226 Brassica carinata HOM05D003756 ORTHO05D004304 1.9e-28 128.6 66 92.4
C04p40240 Brassica napus HOM05D003756 ORTHO05D004304 1.9e-28 128.6 66 92.4
BolC4t25600H Brassica oleracea HOM05D003756 ORTHO05D004304 1.9e-28 128.6 66 92.4
Ca_09004_v3 Cicer arietinum L. HOM05D003756 ORTHO05D004304 1.9e-28 128.6 73 84.9
BcaB02g08557 Brassica carinata HOM05D003756 ORTHO05D004304 2.5e-28 128.3 66 90.9
A04p06750 Brassica napus HOM05D003756 ORTHO05D004304 2.5e-28 128.3 66 90.9
Psat3g033400 Pisum sativum HOM05D003756 ORTHO05D004304 2.5e-28 128.3 73 83.6
Sp5g09600 Schrenkiella parvula HOM05D003756 ORTHO05D004304 2.5e-28 128.3 66 90.9
Sed0019143 Sechium edule HOM05D003756 ORTHO05D004304 2.5e-28 128.3 71 85.9
TWI74G1420 Tripterygium wilfordii HOM05D003756 ORTHO05D004304 3.2e-28 127.9 74 82.4
BcaB02g07820 Brassica carinata HOM05D003756 ORTHO05D004304 4.2e-28 127.5 66 90.9
Lj6g0015332 Lotus japonicus HOM05D003756 ORTHO05D004304 4.2e-28 127.5 73 84.9
Thhalv10010889m.g Eutrema salsugineum HOM05D003756 ORTHO05D004304 5.5e-28 127.1 65 90.8
Gohir.A01G206400 Gossypium hirsutum HOM05D003756 ORTHO05D004304 5.5e-28 127.1 73 82.2
Gorai.002G240000 Gossypium raimondii HOM05D003756 ORTHO05D004304 5.5e-28 127.1 73 82.2
Cpa.g.sc5.21 Carica papaya HOM05D003756 ORTHO05D004304 1.2e-27 125.9 73 82.2
Prupe.1G506800 Prunus persica HOM05D003756 ORTHO05D004304 1.2e-27 125.9 73 82.2
Gohir.D01G195800 Gossypium hirsutum HOM05D003756 ORTHO05D004304 1.6e-27 125.6 73 80.8
Peaxi162Scf00003g00522 Petunia axillaris HOM05D003756 ORTHO05D004304 2.1e-27 125.2 74 82.4
Prupe.7G110400 Prunus persica HOM05D003756 ORTHO05D004304 3.6e-27 124.4 73 82.2
Medtr7g104570 Medicago truncatula HOM05D003756 ORTHO05D004304 4.7e-27 124.0 73 80.8
Potri.004G188700 Populus trichocarpa HOM05D003756 ORTHO05D004304 4.7e-27 124.0 71 81.7
CANSAT80G0977 Cannabis sativa HOM05D003756 ORTHO05D004304 6.1e-27 123.6 73 80.8
Sabra04G0129400 Salix brachista HOM05D003756 ORTHO05D004304 6.1e-27 123.6 71 81.7
Thecc.05G088800 Theobroma cacao HOM05D003756 ORTHO05D004304 6.1e-27 123.6 74 82.4
Atru.chr8.1542 Acer truncatum HOM05D003756 ORTHO05D004304 1.0e-26 122.9 73 80.8
Sc20g0006280 Simmondsia chinensis HOM05D003756 ORTHO05D004304 1.0e-26 122.9 73 82.2
ClCG04G010050 Citrullus lanatus HOM05D003756 ORTHO05D004304 1.4e-26 122.5 73 82.2
FAN02G3109 Fragaria x ananassa HOM05D003756 ORTHO05D004304 1.4e-26 122.5 70 82.9
ClCG04G010070 Citrullus lanatus HOM05D003756 ORTHO05D004304 1.8e-26 122.1 73 82.2
MELO3C009472.2 Cucumis melo HOM05D003756 ORTHO05D004304 1.8e-26 122.1 73 82.2
CsaV3_3G037270 Cucumis sativus L. HOM05D003756 ORTHO05D004304 1.8e-26 122.1 73 82.2
ECA248G1642 Erigeron canadensis HOM05D003756 ORTHO05D004304 2.3e-26 121.7 70 80.0
Manes.08G025100 Manihot esculenta HOM05D003756 ORTHO05D004304 2.3e-26 121.7 73 78.1
RcHm_v2.0_Chr3g0473621 Rosa chinensis HOM05D003756 ORTHO05D004304 2.3e-26 121.7 73 78.1
Sed0014276 Sechium edule HOM05D003756 ORTHO05D004304 2.3e-26 121.7 73 82.2
MELO3C024548.2 Cucumis melo HOM05D003756 ORTHO05D004304 3.0e-26 121.3 73 82.2
Eucgr.K02043 Eucalyptus grandis HOM05D003756 ORTHO05D004304 3.0e-26 121.3 73 80.8
FAN05G1127 Fragaria x ananassa HOM05D003756 ORTHO05D004304 4.0e-26 120.9 69 82.6
FAN05G3155 Fragaria x ananassa HOM05D003756 ORTHO05D004304 4.0e-26 120.9 69 82.6
FAN09G2235 Fragaria x ananassa HOM05D003756 ORTHO05D004304 4.0e-26 120.9 69 82.6
arahy.Tifrunner.gnm1.ann1.IH6TUL Arachis hypogaea HOM05D003756 ORTHO05D004304 5.2e-26 120.6 73 79.5
ECA233G1974 Erigeron canadensis HOM05D003756 ORTHO05D004304 5.2e-26 120.6 68 82.4
Lalb_Chr20g0111721 Lupinus albus HOM05D003756 ORTHO05D004304 5.2e-26 120.6 75 77.3
Nitab4.5_0000755g0180 Nicotiana tabacum HOM05D003756 ORTHO05D004304 5.2e-26 120.6 68 82.4
Atru.chr8.1539 Acer truncatum HOM05D003756 ORTHO05D004304 6.8e-26 120.2 73 78.1
Duzib128G1348 Durio zibethinus HOM05D003756 ORTHO05D004304 6.8e-26 120.2 74 79.7
HanXRQChr01g0024081 Helianthus annuus HOM05D003756 ORTHO05D004304 6.8e-26 120.2 73 79.5
PGR142G3329 Punica granatum HOM05D003756 ORTHO05D004304 6.8e-26 120.2 73 80.8
Duzib106G1642 Durio zibethinus HOM05D003756 ORTHO05D004304 8.8e-26 119.8 74 79.7
FvH4_6g18660 Fragaria vesca HOM05D003756 ORTHO05D004304 8.8e-26 119.8 69 81.2
FAN14G1823 Fragaria x ananassa HOM05D003756 ORTHO05D004304 8.8e-26 119.8 69 81.2
HanXRQChr02g0054771 Helianthus annuus HOM05D003756 ORTHO05D004304 8.8e-26 119.8 71 80.3
MD12G1036000 Malus domestica HOM05D003756 ORTHO05D004304 8.8e-26 119.8 73 79.5
QL07p038800 Quercus lobata HOM05D003756 ORTHO05D004304 1.2e-25 119.4 74 74.3
QL07p039050 Quercus lobata HOM05D003756 ORTHO05D004304 1.2e-25 119.4 74 74.3
Aqoxy2G03946 Aquilegia oxysepala HOM05D003756 ORTHO05D004304 1.5e-25 119.0 69 81.2
ClCG10G018980 Citrullus lanatus HOM05D003756 ORTHO05D004304 1.5e-25 119.0 73 79.5
MD15G1359000 Malus domestica HOM05D003756 ORTHO05D004304 2.0e-25 118.6 73 78.1
Potri.009G149300 Populus trichocarpa HOM05D003756 ORTHO05D004304 2.0e-25 118.6 73 76.7
Cfa016605 Carpinus fangiana HOM05D003756 ORTHO05D004304 2.6e-25 118.2 74 78.4
Haze_19608 Corylus avellana HOM05D003756 ORTHO05D004304 2.6e-25 118.2 74 78.4
Lsat_1_v5_gn_1_59380 Lactuca sativa HOM05D003756 ORTHO05D004304 2.6e-25 118.2 71 80.3
Lalb_Chr25g0288331 Lupinus albus HOM05D003756 ORTHO05D004304 2.6e-25 118.2 70 78.6
MD14G1022700 Malus domestica HOM05D003756 ORTHO05D004304 2.6e-25 118.2 73 78.1
CSS0028702 Camellia sinensis var. sinensis HOM05D003756 ORTHO05D004304 3.4e-25 117.9 71 77.5
CDE06G0646 Ceratophyllum demersum HOM05D003756 ORTHO05D004304 3.4e-25 117.9 73 79.5
FvH4_5g38790 Fragaria vesca HOM05D003756 ORTHO05D004304 3.4e-25 117.9 73 76.7
Glyma.03G195700 Glycine max HOM05D003756 ORTHO05D004304 3.4e-25 117.9 71 77.5
Solyc11g068400.2 Solanum lycopersicum HOM05D003756 ORTHO05D004304 3.4e-25 117.9 73 76.7
Sopen11g027120 Solanum pennellii HOM05D003756 ORTHO05D004304 3.4e-25 117.9 73 76.7
Gohir.D01G127900 Gossypium hirsutum HOM05D003756 ORTHO05D004304 4.4e-25 117.5 74 77.0
Gorai.002G158500 Gossypium raimondii HOM05D003756 ORTHO05D004304 4.4e-25 117.5 74 77.0
Lsat_1_v5_gn_6_38741 Lactuca sativa HOM05D003756 ORTHO05D004304 4.4e-25 117.5 71 80.3
BcaB01g00346 Brassica carinata HOM05D003756 ORTHO05D004304 5.7e-25 117.1 60 90.0
BcaC07g39638 Brassica carinata HOM05D003756 ORTHO05D004304 5.7e-25 117.1 60 90.0
A09p45820 Brassica napus HOM05D003756 ORTHO05D004304 5.7e-25 117.1 60 90.0
C08p28010 Brassica napus HOM05D003756 ORTHO05D004304 5.7e-25 117.1 60 90.0
BolC8t50413H Brassica oleracea HOM05D003756 ORTHO05D004304 5.7e-25 117.1 60 90.0
BraA09t40043Z Brassica rapa HOM05D003756 ORTHO05D004304 5.7e-25 117.1 60 90.0
Gohir.A09G139300 Gossypium hirsutum HOM05D003756 ORTHO05D004304 7.5e-25 116.7 68 80.9
Gohir.D09G135300 Gossypium hirsutum HOM05D003756 ORTHO05D004304 7.5e-25 116.7 68 80.9
Gorai.006G155200 Gossypium raimondii HOM05D003756 ORTHO05D004304 7.5e-25 116.7 68 80.9
TWI53G0293 Tripterygium wilfordii HOM05D003756 ORTHO05D004304 1.3e-24 115.9 82 72.0
Gohir.A01G138200 Gossypium hirsutum HOM05D003756 ORTHO05D004304 1.7e-24 115.5 74 77.0
CAN.G1358.12 Capsicum annuum HOM05D003756 ORTHO05D004304 2.8e-24 114.8 74 74.3
CAN.G919.30 Capsicum annuum HOM05D003756 ORTHO05D004304 2.8e-24 114.8 61 85.2
Actinidia24215 Actinidia chinensis HOM05D003756 ORTHO05D004304 3.7e-24 114.4 71 77.5
Phvul.001G190200 Phaseolus vulgaris HOM05D003756 ORTHO05D004304 3.7e-24 114.4 71 77.5
TAR636G3345 Trochodendron aralioides HOM05D003756 ORTHO05D004304 3.7e-24 114.4 71 76.1
AUR62006180 Chenopodium quinoa HOM05D003756 ORTHO05D004304 6.3e-24 113.6 71 76.1
AUR62028527 Chenopodium quinoa HOM05D003756 ORTHO05D004304 6.3e-24 113.6 71 76.1
PGSC0003DMG400005923 Solanum tuberosum HOM05D003756 ORTHO05D004304 6.3e-24 113.6 65 76.9
GSVIVG01033840001 Vitis vinifera HOM05D003756 ORTHO05D004304 8.3e-24 113.2 71 74.6
FAN04G2492 Fragaria x ananassa HOM05D003756 ORTHO05D004304 1.4e-23 112.5 67 77.6
FAN18G4123 Fragaria x ananassa HOM05D003756 ORTHO05D004304 1.4e-23 112.5 76 73.7
Ah.15g090880 Amaranthus hybridus HOM05D003756 ORTHO05D004304 1.8e-23 112.1 73 71.2
Glyma.13G153500 Glycine max HOM05D003756 ORTHO05D004304 1.8e-23 112.1 74 74.3
Actinidia07248 Actinidia chinensis HOM05D003756 ORTHO05D004304 3.1e-23 111.3 71 74.6
HPP92_026089 Vanilla planifolia HOM05D003756 ORTHO05D004304 3.1e-23 111.3 71 71.8
Actinidia35464 Actinidia chinensis HOM05D003756 ORTHO05D004304 4.1e-23 110.9 71 73.2
HPP92_025135 Vanilla planifolia HOM05D003756 ORTHO05D004304 5.4e-23 110.5 71 71.8
CAN.G1039.16 Capsicum annuum HOM05D003756 ORTHO05D004304 7.0e-23 110.2 73 69.9
MBI17_g08353_MAGBIO Magnolia biondii HOM05D003756 ORTHO05D004304 7.0e-23 110.2 70 75.7
MD07G1149900 Malus domestica HOM05D003756 ORTHO05D004304 7.0e-23 110.2 73 72.6
Cc01_g09260 Coffea canephora HOM05D003756 ORTHO05D004304 9.1e-23 109.8 68 73.5
Dinv42555 Davidia involucrata HOM05D003756 ORTHO05D004304 9.1e-23 109.8 65 75.4
CAN.G2235.1 Capsicum annuum HOM05D003756 ORTHO05D004304 1.2e-22 109.4 73 69.9
Nn6g34903 Nelumbo nucifera HOM05D003756 ORTHO05D004304 1.2e-22 109.4 73 75.3
Nitab4.5_0001216g0110 Nicotiana tabacum HOM05D003756 ORTHO05D004304 1.2e-22 109.4 90 62.2
CiPaw.09G013700 Carya illinoinensis HOM05D003756 ORTHO05D004304 1.6e-22 109.0 73 72.6
Zm00001eb196190 Zea mays HOM05D003756 ORTHO05D004304 2.7e-22 108.2 63 74.6
CSS0017737 Camellia sinensis var. sinensis HOM05D003756 ORTHO05D004304 3.5e-22 107.8 65 75.4
CSS0036255 Camellia sinensis var. sinensis HOM05D003756 ORTHO05D004304 3.5e-22 107.8 65 75.4
arahy.Tifrunner.gnm1.ann1.N59HKK Arachis hypogaea HOM05D003756 ORTHO05D004304 4.5e-22 107.5 95 60.0
Oeu002376.1 Olea europaea HOM05D003756 ORTHO05D004304 4.5e-22 107.5 71 69.0
RcHm_v2.0_Chr7g0240771 Rosa chinensis HOM05D003756 ORTHO05D004304 4.5e-22 107.5 73 69.9
Sp4g18470 Schrenkiella parvula HOM05D003756 ORTHO05D004304 4.5e-22 107.5 56 89.3
CiPaw.10G009500 Carya illinoinensis HOM05D003756 ORTHO05D004304 5.9e-22 107.1 73 69.9
Os05g0400400 Oryza sativa ssp. japonica HOM05D003756 ORTHO05D004304 5.9e-22 107.1 61 73.8
TAR623G0741 Trochodendron aralioides HOM05D003756 ORTHO05D004304 1.3e-21 105.9 73 72.6
Zm00001eb093400 Zea mays HOM05D003756 ORTHO05D004304 2.3e-21 105.1 63 71.4
PSO339G6416 Papaver somniferum HOM05D003756 ORTHO05D004304 5.0e-21 104.0 63 81.0
PSO384G4395 Papaver somniferum HOM05D003756 ORTHO05D004304 5.0e-21 104.0 63 81.0
HanXRQChr14g0451601 Helianthus annuus HOM05D003756 ORTHO05D004304 1.5e-20 102.4 65 72.3
Nitab4.5_0000132g0030 Nicotiana tabacum HOM05D003756 ORTHO05D004304 1.9e-20 102.1 83 62.7
unitig_747.g21944 Utricularia gibba HOM05D003756 ORTHO05D004304 2.5e-20 101.7 73 64.4
COL.COLO4_29737 Corchorus olitorius HOM05D003756 ORTHO05D004304 4.2e-20 100.9 56 82.1
SalBow5G5426 Salvia bowleyana HOM05D003756 ORTHO05D004304 5.5e-20 100.5 73 65.8
Migut.D02449 Erythranthe guttata HOM05D003756 ORTHO05D004304 7.2e-20 100.1 73 67.1
Glyma.19G194915 Glycine max HOM05D003756 ORTHO05D004304 1.2e-19 99.4 100 54.0
Ah.08g210600 Amaranthus hybridus HOM05D001616 ORTHO05D003701 2.1e-19 98.6 97 53.6
TAR633G1678 Trochodendron aralioides HOM05D003756 ORTHO05D004304 2.1e-19 98.6 101 52.5
ECA238G2045 Erigeron canadensis HOM05D003756 ORTHO05D004304 3.6e-19 97.8 65 69.2
Nitab4.5_0006996g0050 Nicotiana tabacum HOM05D003756 ORTHO05D004304 6.1e-19 97.1 56 78.6
SEGI_29748 Sequoiadendron giganteum HOM05D003756 ORTHO05D004304 6.1e-19 97.1 58 74.1
BraA04t16378Z Brassica rapa HOM05D003756 ORTHO05D004304 1.0e-18 96.3 52 84.6
Duzib093G1183 Durio zibethinus HOM05D003756 ORTHO05D004304 1.4e-18 95.9 57 80.7
CAN.G28765.1 Capsicum annuum HOM05D003756 ORTHO05D004304 3.0e-18 94.7 75 62.7
Rhsim01G0205100 Rhododendron simsii HOM05D003756 ORTHO05D004304 4.0e-18 94.4 124 44.4
MD16G1126500 Malus domestica HOM05D003756 ORTHO05D004304 8.9e-18 93.2 63 69.8
TPR.G19525 Trifolium pratense HOM05D003756 ORTHO05D004304 8.9e-18 93.2 56 76.8
Rhsim13G0111400 Rhododendron simsii HOM05D003756 ORTHO05D004304 1.5e-17 92.4 89 53.9
Ciclev10013189m.g Citrus clementina HOM05D003756 ORTHO05D004304 2.6e-17 91.7 56 73.2
CsaV3_6G040700 Cucumis sativus L. HOM05D003756 ORTHO05D004304 4.4e-17 90.9 56 78.6
EL10Ac7g16918 Beta vulgaris HOM05D003756 ORTHO05D004304 7.5e-17 90.1 57 71.9
Sabra09G0117900 Salix brachista HOM05D003756 ORTHO05D004304 7.5e-17 90.1 56 75.0
Hund19934 Selenicereus undatus HOM05D003756 ORTHO05D004304 1.3e-16 89.4 56 73.2
PGSC0003DMG400026342 Solanum tuberosum HOM05D003756 ORTHO05D004304 1.3e-16 89.4 61 68.9
Oeu035551.2 Olea europaea HOM05D003756 ORTHO05D004304 1.7e-16 89.0 56 73.2
Nitab4.5_0000963g0100 Nicotiana tabacum HOM05D003756 ORTHO05D004304 2.2e-16 88.6 56 71.4
Mapoly0074s0034 Marchantia polymorpha HOM05D003756 ORTHO05D004304 4.9e-16 87.4 65 63.1
Sc02g0000240 Simmondsia chinensis HOM05D003756 ORTHO05D004304 4.9e-16 87.4 56 71.4
PSO478G0414 Papaver somniferum HOM05D003756 ORTHO05D004304 1.8e-15 85.5 61 63.9
Actinidia37081 Actinidia chinensis HOM05D003756 ORTHO05D004304 2.4e-15 85.1 56 71.4
Dinv29482 Davidia involucrata HOM05D003756 ORTHO05D004304 3.2e-15 84.7 56 69.6
SEGI_32530 Sequoiadendron giganteum HOM05D003756 ORTHO05D004304 4.1e-15 84.3 56 73.2
ATR0796G241 Amborella trichopoda HOM05D003756 ORTHO05D004304 5.4e-15 84.0 46 80.4
Hma1.2p1_0578F.1_g182500 Hydrangea macrophylla HOM05D003756 ORTHO05D004304 5.4e-15 84.0 46 76.1
Pp3c7_2560 Physcomitrium patens HOM05D003756 ORTHO05D004304 2.0e-14 82.0 51 66.7
Aa31LG10G7740 Aethionema arabicum HOM05D003756 ORTHO05D004304 7.8e-14 80.1 40 92.5
Pp3c11_23610 Physcomitrium patens HOM05D003756 ORTHO05D004304 1.0e-13 79.7 55 63.6
FAN13G0109 Fragaria x ananassa HOM05D003756 ORTHO05D004304 6.6e-13 77.0 53 66.0
Hma1.2p1_0084F.1_g043780 Hydrangea macrophylla HOM05D003756 ORTHO05D004304 1.5e-12 75.9 56 57.1
MELO3C032936.2 Cucumis melo HOM05D003756 ORTHO05D004304 1.9e-12 75.5 40 85.0
SalBow6G3312 Salvia bowleyana HOM05D003756 ORTHO05D004304 3.3e-12 74.7 56 58.9
CBR_g21065 Chara braunii HOM05D003756 ORTHO05D004304 5.6e-12 73.9 52 65.4
Dinv33579 Davidia involucrata HOM05D003756 ORTHO05D004304 1.2e-11 72.8 38 81.6
FAN13G3094 Fragaria x ananassa HOM05D003756 ORTHO05D004304 3.6e-11 71.2 46 73.9
FAN04G1204 Fragaria x ananassa HOM05D003756 ORTHO05D004304 2.0e-09 65.5 53 58.5
FAN04G2029 Fragaria x ananassa HOM05D003756 ORTHO05D004304 2.0e-09 65.5 53 58.5
MCO16G664 Micromonas commoda HOM05D003756 ORTHO05D004304 3.7e-08 61.2 60 53.3
FAN21G3678 Fragaria x ananassa HOM05D002333 ORTHO05D004304 4.9e-08 60.8 40 70.0
Nn2g14157 Nelumbo nucifera HOM05D003756 ORTHO05D004304 4.9e-08 60.8 37 75.7
RcHm_v2.0_Chr7g0240761 Rosa chinensis HOM05D003756 ORTHO05D004304 1.2e-06 56.2 40 62.5


User provided reference genes

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