Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR162310 Cardamine hirsuta HOM05D000240 ORTHO05D002721 4.4e-30 134.0 71 100.0
CARHR018970 Cardamine hirsuta HOM05D000240 ORTHO05D002721 1.5e-17 92.4 71 71.8
AL1G30790 Arabidopsis lyrata HOM05D000240 ORTHO05D002721 3.3e-17 91.3 71 70.4
Carub.0001s1800 Capsella rubella HOM05D000240 ORTHO05D002721 3.3e-17 91.3 71 70.4
AT1G18370 Arabidopsis thaliana HOM05D000240 ORTHO05D002721 7.3e-17 90.1 71 69.0
Sp1g16330 Schrenkiella parvula HOM05D000240 ORTHO05D002721 7.3e-17 90.1 71 70.4
BcaB07g31846 Brassica carinata HOM05D000240 ORTHO05D002721 9.5e-17 89.7 71 70.4
Thhalv10006702m.g Eutrema salsugineum HOM05D000240 ORTHO05D002721 1.2e-16 89.4 71 70.4
BcaC05g25729 Brassica carinata HOM05D000240 ORTHO05D002721 3.6e-16 87.8 71 69.0
A06p14380 Brassica napus HOM05D000240 ORTHO05D002721 3.6e-16 87.8 71 69.0
BolC5t30361H Brassica oleracea HOM05D000240 ORTHO05D002721 3.6e-16 87.8 71 69.0
BraA06t24566Z Brassica rapa HOM05D000240 ORTHO05D002721 3.6e-16 87.8 71 69.0
BcaC07g41333 Brassica carinata HOM05D000240 ORTHO05D002721 6.2e-16 87.0 71 66.2
C05p16620 Brassica napus HOM05D000240 ORTHO05D002721 1.4e-15 85.9 71 67.6
Aa31LG7G3060 Aethionema arabicum HOM05D000240 ORTHO05D002721 2.3e-15 85.1 71 66.2
A09p59980 Brassica napus HOM05D000240 ORTHO05D002721 2.9e-13 78.2 71 62.0
BraA09t41368Z Brassica rapa HOM05D000240 ORTHO05D002721 2.9e-13 78.2 71 62.0
C08p43430 Brassica napus HOM05D000240 ORTHO05D002721 1.9e-12 75.5 71 62.0
BolC8t51891H Brassica oleracea HOM05D000240 ORTHO05D002721 1.9e-12 75.5 71 62.0
Cpa.g.sc3.468 Carica papaya HOM05D000240 ORTHO05D002721 2.5e-09 65.1 71 53.5
EL10Ac3g06875 Beta vulgaris HOM05D000240 ORTHO05D002721 4.3e-09 64.3 69 55.1
Potri.015G044600 Populus trichocarpa HOM05D000240 ORTHO05D002721 4.3e-09 64.3 69 49.3
Dinv01102 Davidia involucrata HOM05D000240 ORTHO05D002721 5.6e-09 63.9 71 53.5
Dinv12219 Davidia involucrata HOM05D000240 ORTHO05D002721 5.6e-09 63.9 71 53.5
Thecc.03G040400 Theobroma cacao HOM05D000240 ORTHO05D002721 5.6e-09 63.9 69 53.6
COL.COLO4_20836 Corchorus olitorius HOM05D000240 ORTHO05D002721 9.5e-09 63.2 69 56.5
Dinv28137 Davidia involucrata HOM05D000240 ORTHO05D002721 9.5e-09 63.2 71 54.9
Ciclev10018724m.g Citrus clementina HOM05D000240 ORTHO05D002721 1.2e-08 62.8 69 52.2
Duzib084G1365 Durio zibethinus HOM05D000240 ORTHO05D002721 1.2e-08 62.8 69 53.6
Duzib186G0002 Durio zibethinus HOM05D000240 ORTHO05D002721 1.2e-08 62.8 69 53.6
Sabra15G0040500 Salix brachista HOM05D000240 ORTHO05D002721 1.2e-08 62.8 69 49.3
THA.LOC104813906 Tarenaya hassleriana HOM05D000240 ORTHO05D002721 2.1e-08 62.0 71 50.7
Gohir.D12G267600 Gossypium hirsutum HOM05D000240 ORTHO05D002721 2.8e-08 61.6 69 52.2
Gorai.008G287600 Gossypium raimondii HOM05D000240 ORTHO05D002721 2.8e-08 61.6 69 52.2
MD14G1229400 Malus domestica HOM05D000240 ORTHO05D002721 2.8e-08 61.6 71 53.5
Gohir.A12G267100 Gossypium hirsutum HOM05D000240 ORTHO05D002721 3.6e-08 61.2 69 52.2
Actinidia18922 Actinidia chinensis HOM05D000240 ORTHO05D002721 4.7e-08 60.8 71 50.7
Oeu017510.1 Olea europaea HOM05D000240 ORTHO05D002721 4.7e-08 60.8 69 52.2
THA.LOC104812150 Tarenaya hassleriana HOM05D000240 ORTHO05D002721 4.7e-08 60.8 71 47.9
Atru.chr9.898 Acer truncatum HOM05D000240 ORTHO05D002721 6.2e-08 60.5 69 52.2
Lsat_1_v5_gn_8_143381 Lactuca sativa HOM05D000240 ORTHO05D002721 6.2e-08 60.5 72 56.9
Prupe.5G224200 Prunus persica HOM05D000240 ORTHO05D002721 6.2e-08 60.5 71 52.1
arahy.Tifrunner.gnm1.ann1.VTXV28 Arachis hypogaea HOM05D000240 ORTHO05D002721 8.1e-08 60.1 71 50.7
Potri.012G054400 Populus trichocarpa HOM05D000240 ORTHO05D002721 8.1e-08 60.1 69 50.7
MD06G1219700 Malus domestica HOM05D000240 ORTHO05D002721 1.1e-07 59.7 71 52.1
FvH4_5g11710 Fragaria vesca HOM05D000240 ORTHO05D002721 1.4e-07 59.3 71 50.7
FAN18G0785 Fragaria x ananassa HOM05D000240 ORTHO05D002721 1.4e-07 59.3 71 50.7
Sabra12G0038200 Salix brachista HOM05D000240 ORTHO05D002721 1.4e-07 59.3 69 49.3
Aqoxy3G00210 Aquilegia oxysepala HOM05D000240 ORTHO05D002721 1.8e-07 58.9 69 47.8
CSS0004151 Camellia sinensis var. sinensis HOM05D000240 ORTHO05D002721 2.4e-07 58.5 69 52.2
AUR62034678 Chenopodium quinoa HOM05D000240 ORTHO05D002721 2.4e-07 58.5 69 49.3
Gohir.D07G071300 Gossypium hirsutum HOM05D000240 ORTHO05D002721 2.4e-07 58.5 69 50.7
Gorai.001G075200 Gossypium raimondii HOM05D000240 ORTHO05D002721 2.4e-07 58.5 69 50.7
Cfa019737 Carpinus fangiana HOM05D000240 ORTHO05D002721 3.1e-07 58.2 71 49.3
Haze_18723 Corylus avellana HOM05D000240 ORTHO05D002721 3.1e-07 58.2 71 49.3
DCAR_011365 Daucus carota HOM05D000240 ORTHO05D002721 3.1e-07 58.2 69 50.7
Lj5A152G72 Lonicera japonica HOM05D000240 ORTHO05D002721 3.1e-07 58.2 69 50.7
AUR62040394 Chenopodium quinoa HOM05D000240 ORTHO05D002721 4.0e-07 57.8 69 49.3
TWI60G1354 Tripterygium wilfordii HOM05D000240 ORTHO05D002721 4.0e-07 57.8 69 49.3
CiPaw.16G088600 Carya illinoinensis HOM05D000240 ORTHO05D002721 5.2e-07 57.4 69 52.2
Migut.E01768 Erythranthe guttata HOM05D000240 ORTHO05D002721 5.2e-07 57.4 69 46.4
FAN13G1973 Fragaria x ananassa HOM05D000240 ORTHO05D002721 5.2e-07 57.4 71 50.7
Gohir.A07G066700 Gossypium hirsutum HOM05D000240 ORTHO05D002721 5.2e-07 57.4 69 50.7
QL10p026447 Quercus lobata HOM05D000240 ORTHO05D002721 5.2e-07 57.4 69 50.7
TWI15G1124 Tripterygium wilfordii HOM05D000240 ORTHO05D002721 5.2e-07 57.4 69 49.3
CiPaw.15G134800 Carya illinoinensis HOM05D000240 ORTHO05D002721 6.8e-07 57.0 69 50.7
DCAR_015153 Daucus carota HOM05D000240 ORTHO05D002721 6.8e-07 57.0 69 50.7
arahy.Tifrunner.gnm1.ann1.K6T9FH Arachis hypogaea HOM05D000240 ORTHO05D002721 8.9e-07 56.6 71 47.9
CSS0028615 Camellia sinensis var. sinensis HOM05D000240 ORTHO05D002721 8.9e-07 56.6 71 50.7
CSS0039528 Camellia sinensis var. sinensis HOM05D000240 ORTHO05D002721 8.9e-07 56.6 71 50.7
FAN08G0544 Fragaria x ananassa HOM05D000240 ORTHO05D002721 8.9e-07 56.6 71 50.7
Manes.01G014700 Manihot esculenta HOM05D000240 ORTHO05D002721 8.9e-07 56.6 71 47.9
RcHm_v2.0_Chr7g0186051 Rosa chinensis HOM05D000240 ORTHO05D002721 8.9e-07 56.6 71 50.7
MSTRG.4518 Avicennia marina HOM05D000240 ORTHO05D002721 1.2e-06 56.2 69 49.3
ClCG04G010950 Citrullus lanatus HOM05D000240 ORTHO05D002721 1.2e-06 56.2 69 49.3
Hma1.2p1_0653F.1_g196050 Hydrangea macrophylla HOM05D000240 ORTHO05D002721 1.2e-06 56.2 71 47.9
Hma1.2p1_1283F.1_g272740 Hydrangea macrophylla HOM05D000240 ORTHO05D002721 1.2e-06 56.2 71 47.9
CAN.G1129.9 Capsicum annuum HOM05D000240 ORTHO05D002721 1.5e-06 55.8 69 50.7
MELO3C002106.2 Cucumis melo HOM05D000240 ORTHO05D002721 1.5e-06 55.8 69 49.3
CsaV3_1G006890 Cucumis sativus L. HOM05D000240 ORTHO05D002721 1.5e-06 55.8 69 49.3
Duzib205G0287 Durio zibethinus HOM05D000240 ORTHO05D002721 1.5e-06 55.8 69 50.7
Nitab4.5_0001986g0020 Nicotiana tabacum HOM05D000240 ORTHO05D002721 1.5e-06 55.8 69 50.7
Peaxi162Scf00683g00135 Petunia axillaris HOM05D000240 ORTHO05D002721 1.5e-06 55.8 69 52.2
Solyc03g119220.3 Solanum lycopersicum HOM05D000240 ORTHO05D002721 1.5e-06 55.8 69 50.7
Sopen03g038100 Solanum pennellii HOM05D000240 ORTHO05D002721 1.5e-06 55.8 69 50.7
GSVIVG01008333001 Vitis vinifera HOM05D000240 ORTHO05D002721 1.5e-06 55.8 71 46.5
CANSAT80G1867 Cannabis sativa HOM05D000240 ORTHO05D002721 2.0e-06 55.5 69 50.7
FAN04G1835 Fragaria x ananassa HOM05D000240 ORTHO05D002721 2.0e-06 55.5 71 50.7
Nitab4.5_0007294g0010 Nicotiana tabacum HOM05D000240 ORTHO05D002721 2.0e-06 55.5 47 61.7
arahy.Tifrunner.gnm1.ann1.XRS16L Arachis hypogaea HOM05D000240 ORTHO05D002721 3.4e-06 54.7 71 46.5
Lalb_Chr14g0370981 Lupinus albus HOM05D000240 ORTHO05D002721 3.4e-06 54.7 68 48.5
PGSC0003DMG400005650 Solanum tuberosum HOM05D000240 ORTHO05D002721 3.4e-06 54.7 69 49.3
Nn4g23942 Nelumbo nucifera HOM05D000240 ORTHO05D002721 4.4e-06 54.3 71 47.9
Manes.05G132500 Manihot esculenta HOM05D000240 ORTHO05D002721 5.8e-06 53.9 69 44.9
Rhsim08G0130900 Rhododendron simsii HOM05D000240 ORTHO05D002721 5.8e-06 53.9 69 49.3
Lj2g0024066 Lotus japonicus HOM05D000240 ORTHO05D002721 7.6e-06 53.5 69 46.4
PSO063G7398 Papaver somniferum HOM05D000240 ORTHO05D002721 7.6e-06 53.5 71 47.9
DCAR_004531 Daucus carota HOM05D000240 ORTHO05D002721 9.9e-06 53.1 65 43.1


User provided reference genes

Program Settings