Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR162000 Cardamine hirsuta HOM05D007333 ORTHO05D008874 1.5e-66 256.1 143 100.0
AT3G52230 Arabidopsis thaliana HOM05D007333 ORTHO05D008874 1.7e-44 183.0 112 79.5
AL5G32820 Arabidopsis lyrata HOM05D007333 ORTHO05D008874 1.2e-42 176.8 121 75.2
Carub.0005s1859 Capsella rubella HOM05D007333 ORTHO05D008874 1.2e-42 176.8 123 76.4
Sp5g10030 Schrenkiella parvula HOM05D007333 ORTHO05D008874 1.6e-39 166.4 125 71.2
BolC8t50364H Brassica oleracea HOM05D007333 ORTHO05D008874 9.2e-35 150.6 123 63.4
Thhalv10010807m.g Eutrema salsugineum HOM05D007333 ORTHO05D008874 2.0e-34 149.4 113 66.4
Aa31LG10G7320 Aethionema arabicum HOM05D007333 ORTHO05D008874 2.7e-34 149.1 119 63.9
BcaC07g39593 Brassica carinata HOM05D007333 ORTHO05D008874 2.7e-34 149.1 121 66.9
A09p45290 Brassica napus HOM05D007333 ORTHO05D008874 1.0e-33 147.1 119 68.1
C08p27470 Brassica napus HOM05D007333 ORTHO05D008874 1.0e-33 147.1 119 62.2
BraA09t39992Z Brassica rapa HOM05D007333 ORTHO05D008874 2.3e-33 146.0 119 67.2
THA.LOC104823559 Tarenaya hassleriana HOM05D007333 ORTHO05D008874 1.2e-26 123.6 124 56.5
A04p07130 Brassica napus HOM05D007333 ORTHO05D008874 1.4e-19 100.1 67 73.1
Cpa.g.sc128.62 Carica papaya HOM05D007333 ORTHO05D008874 4.1e-19 98.6 95 56.8
PGR044G2090 Punica granatum HOM05D007333 ORTHO05D008874 1.2e-15 87.0 115 42.6
Gohir.D05G290801 Gossypium hirsutum HOM05D007333 ORTHO05D008874 4.7e-15 85.1 120 44.2
Gorai.009G305900 Gossypium raimondii HOM05D007333 ORTHO05D008874 4.7e-15 85.1 120 44.2
Ciclev10032982m.g Citrus clementina HOM05D007333 ORTHO05D008874 1.8e-14 83.2 115 44.3
BcaC02g09270 Brassica carinata HOM05D007333 ORTHO05D008874 5.2e-14 81.6 84 59.5
Manes.07G092300 Manihot esculenta HOM05D007333 ORTHO05D008874 1.2e-13 80.5 105 45.7
Gohir.A05G289401 Gossypium hirsutum HOM05D007333 ORTHO05D008874 2.0e-13 79.7 120 43.3
Manes.10G054600 Manihot esculenta HOM05D007333 ORTHO05D008874 2.6e-13 79.3 130 40.0
C04p40720 Brassica napus HOM05D012099 ORTHO05D008874 3.4e-13 79.0 82 59.8
Atru.chr12.950 Acer truncatum HOM05D007333 ORTHO05D008874 4.4e-13 78.6 103 43.7
Potri.010G233400 Populus trichocarpa HOM05D007333 ORTHO05D008874 5.8e-13 78.2 89 44.9
TWI38G1382 Tripterygium wilfordii HOM05D007333 ORTHO05D008874 5.8e-13 78.2 130 40.8
TWI63G0473 Tripterygium wilfordii HOM05D007333 ORTHO05D008874 5.8e-13 78.2 106 44.3
Duzib114G0443 Durio zibethinus HOM05D007333 ORTHO05D008874 9.9e-13 77.4 114 43.0
Eucgr.J01027 Eucalyptus grandis HOM05D007333 ORTHO05D008874 1.3e-12 77.0 58 58.6
Thecc.10G097500 Theobroma cacao HOM05D007333 ORTHO05D008874 2.2e-12 76.3 89 47.2
Prupe.2G091100 Prunus persica HOM05D007333 ORTHO05D008874 2.9e-12 75.9 120 38.3
CiPaw.14G027900 Carya illinoinensis HOM05D007333 ORTHO05D008874 3.7e-12 75.5 117 39.3
COL.COLO4_34172 Corchorus olitorius HOM05D007333 ORTHO05D008874 1.1e-11 73.9 122 39.3
Dinv20855 Davidia involucrata HOM05D007333 ORTHO05D008874 1.4e-11 73.6 125 37.6
GSVIVG01034686001 Vitis vinifera HOM05D007333 ORTHO05D008874 1.4e-11 73.6 108 45.4
Oeu015044.1 Olea europaea HOM05D007333 ORTHO05D008874 1.9e-11 73.2 118 39.0
Nitab4.5_0000593g0040 Nicotiana tabacum HOM05D007333 ORTHO05D008874 2.4e-11 72.8 103 46.6
Nitab4.5_0003408g0030 Nicotiana tabacum HOM05D007333 ORTHO05D008874 3.2e-11 72.4 103 45.6
Oeu030485.1 Olea europaea HOM05D007333 ORTHO05D008874 4.1e-11 72.0 115 36.5
ClCG08G008020 Citrullus lanatus HOM05D007333 ORTHO05D008874 7.1e-11 71.2 85 54.1
HanXRQChr14g0456271 Helianthus annuus HOM05D007333 ORTHO05D008874 2.7e-10 69.3 116 38.8
Sabra10G0181000 Salix brachista HOM05D007333 ORTHO05D008874 2.7e-10 69.3 146 32.9
DCAR_019045 Daucus carota HOM05D007333 ORTHO05D008874 3.5e-10 68.9 115 40.9
Duzib128G0626 Durio zibethinus HOM05D007333 ORTHO05D008874 3.5e-10 68.9 120 36.7
Cc02_g10320 Coffea canephora HOM05D007333 ORTHO05D008874 4.6e-10 68.6 134 37.3
Solyc11g007680.2 Solanum lycopersicum HOM05D007333 ORTHO05D008874 4.6e-10 68.6 125 39.2
unitig_746.g26629 Utricularia gibba HOM05D007333 ORTHO05D008874 4.6e-10 68.6 128 38.3
Dinv31280 Davidia involucrata HOM05D007333 ORTHO05D008874 6.0e-10 68.2 114 40.4
Peaxi162Scf00398g00057 Petunia axillaris HOM05D007333 ORTHO05D008874 6.0e-10 68.2 95 43.2
Ca_10485_v3 Cicer arietinum L. HOM05D007333 ORTHO05D008874 7.8e-10 67.8 118 37.3
Lj5g0012880 Lotus japonicus HOM05D007333 ORTHO05D008874 1.0e-09 67.4 124 38.7
PGSC0003DMG402027350 Solanum tuberosum HOM05D007333 ORTHO05D008874 1.0e-09 67.4 118 39.0
HanXRQChr08g0218141 Helianthus annuus HOM05D007333 ORTHO05D008874 1.3e-09 67.0 116 39.7
SalBow6G6510 Salvia bowleyana HOM05D007333 ORTHO05D008874 2.3e-09 66.2 104 37.5
arahy.Tifrunner.gnm1.ann1.YB4FNL Arachis hypogaea HOM05D007333 ORTHO05D008874 3.0e-09 65.9 110 39.1
Sopen11g003540 Solanum pennellii HOM05D007333 ORTHO05D008874 3.0e-09 65.9 109 43.1
Sed0000251 Sechium edule HOM05D007333 ORTHO05D008874 3.9e-09 65.5 97 44.3
arahy.Tifrunner.gnm1.ann1.N9I1MN Arachis hypogaea HOM05D007333 ORTHO05D008874 5.1e-09 65.1 102 42.2
MSTRG.408 Avicennia marina HOM05D007333 ORTHO05D008874 6.6e-09 64.7 115 35.7
CsaV3_2G032900 Cucumis sativus L. HOM05D007333 ORTHO05D008874 6.6e-09 64.7 114 37.7
Migut.F01662 Erythranthe guttata HOM05D007333 ORTHO05D008874 6.6e-09 64.7 116 40.5
RcHm_v2.0_Chr1g0334731 Rosa chinensis HOM05D007333 ORTHO05D008874 8.6e-09 64.3 57 52.6
CANSAT56G1926 Cannabis sativa HOM05D007333 ORTHO05D008874 1.1e-08 63.9 121 33.9
ECA238G3189 Erigeron canadensis HOM05D007333 ORTHO05D008874 1.1e-08 63.9 57 50.9
Lsat_1_v5_gn_8_23060 Lactuca sativa HOM05D007333 ORTHO05D008874 1.1e-08 63.9 124 39.5
FAN01G0324 Fragaria x ananassa HOM05D007333 ORTHO05D008874 1.5e-08 63.5 119 37.0
Medtr1g492600 Medicago truncatula HOM05D007333 ORTHO05D008874 1.5e-08 63.5 52 48.1
Medtr1g492630 Medicago truncatula HOM05D007333 ORTHO05D008874 1.5e-08 63.5 52 48.1
MELO3C019874.2 Cucumis melo HOM05D007333 ORTHO05D008874 2.5e-08 62.8 111 40.5
FAN10G2394 Fragaria x ananassa HOM05D007333 ORTHO05D008874 2.5e-08 62.8 117 38.5
Lalb_Chr21g0313181 Lupinus albus HOM05D007333 ORTHO05D008874 3.3e-08 62.4 55 54.5
Hma1.2p1_0567F.1_g180010 Hydrangea macrophylla HOM05D007333 ORTHO05D008874 4.3e-08 62.0 101 43.6
VMungo0720G1448 Vigna mungo HOM05D007333 ORTHO05D008874 4.3e-08 62.0 103 36.9
Ah.06g184540 Amaranthus hybridus HOM05D007333 ORTHO05D008874 5.6e-08 61.6 105 36.2
ECA233G0976 Erigeron canadensis HOM05D007333 ORTHO05D008874 7.3e-08 61.2 61 54.1
FAN03G1611 Fragaria x ananassa HOM05D007333 ORTHO05D008874 7.3e-08 61.2 114 36.8
vmacro10268 Vaccinium macrocarpon HOM05D007333 ORTHO05D008874 7.3e-08 61.2 124 37.1
FAN06G2923 Fragaria x ananassa HOM05D007333 ORTHO05D008874 1.6e-07 60.1 114 36.8
MBI17_g20230_MAGBIO Magnolia biondii HOM05D007333 ORTHO05D008874 3.6e-07 58.9 67 50.7
Lalb_Chr06g0170141 Lupinus albus HOM05D007333 ORTHO05D008874 6.2e-07 58.2 121 36.4
TAR633G0429 Trochodendron aralioides HOM05D007333 ORTHO05D008874 1.1e-06 57.4 69 43.5
Aqoxy2G01500 Aquilegia oxysepala HOM05D007333 ORTHO05D008874 1.8e-06 56.6 125 33.6
Sc20g0001370 Simmondsia chinensis HOM05D007333 ORTHO05D008874 1.8e-06 56.6 103 33.0
SGA_v2.0_scaffold62G21322 Striga asiatica HOM05D007333 ORTHO05D008874 1.8e-06 56.6 78 42.3
HPP92_009761 Vanilla planifolia HOM05D065211 ORTHO05D008874 2.4e-06 56.2 58 53.4
Glyma.10G201500 Glycine max HOM05D007333 ORTHO05D008874 5.2e-06 55.1 91 36.3
Nn2g13958 Nelumbo nucifera HOM05D007333 ORTHO05D008874 5.2e-06 55.1 31 71.0
Phvul.007G105600 Phaseolus vulgaris HOM05D007333 ORTHO05D008874 5.2e-06 55.1 50 48.0
TPR.G2540 Trifolium pratense HOM05D007333 ORTHO05D008874 5.2e-06 55.1 135 31.1
SEGI_06473 Sequoiadendron giganteum HOM05D007333 ORTHO05D008874 6.8e-06 54.7 57 49.1
Lsat_1_v5_gn_2_102881 Lactuca sativa HOM05D007333 ORTHO05D008874 8.9e-06 54.3 62 46.8


User provided reference genes

Program Settings