Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR161770 Cardamine hirsuta HOM05D007963 ORTHO05D009967 3.0e-60 235.0 115 100.0
Thhalv10010836m.g Eutrema salsugineum HOM05D007963 ORTHO05D009967 5.8e-48 194.1 115 84.3
BcaB01g00449 Brassica carinata HOM05D007963 ORTHO05D009967 3.0e-44 181.8 115 78.3
C08p27320 Brassica napus HOM05D007963 ORTHO05D009967 3.0e-44 181.8 115 78.3
A09p45130 Brassica napus HOM05D007963 ORTHO05D009967 1.5e-43 179.5 115 78.3
BolC8t50349H Brassica oleracea HOM05D007963 ORTHO05D009967 1.5e-43 179.5 115 77.4
BraA09t39974Z Brassica rapa HOM05D007963 ORTHO05D009967 1.5e-43 179.5 115 78.3
BcaNung06964 Brassica carinata HOM05D007963 ORTHO05D009967 5.6e-43 177.6 115 77.4
AL5G32620 Arabidopsis lyrata HOM05D007963 ORTHO05D009967 1.8e-41 172.6 116 77.6
A04p07310 Brassica napus HOM05D007963 ORTHO05D009967 2.6e-40 168.7 115 75.7
BraA04t16426Z Brassica rapa HOM05D007963 ORTHO05D009967 2.6e-40 168.7 115 75.7
BcaC02g09285 Brassica carinata HOM05D007963 ORTHO05D009967 4.5e-40 167.9 115 76.5
AT3G52070 Arabidopsis thaliana HOM05D007963 ORTHO05D009967 7.6e-40 167.2 115 78.3
Carub.0005s1839 Capsella rubella HOM05D007963 ORTHO05D009967 2.2e-39 165.6 122 72.1
BcaB02g08592 Brassica carinata HOM05D007963 ORTHO05D009967 8.4e-39 163.7 110 77.3
BcaNung06087 Brassica carinata HOM05D007963 ORTHO05D009967 9.0e-33 143.7 115 66.1
C04p40920 Brassica napus HOM05D007963 ORTHO05D009967 4.5e-32 141.4 99 77.8
Aa31LG10G7140 Aethionema arabicum HOM05D007963 ORTHO05D009967 3.1e-25 118.6 125 51.2
Ciclev10033085m.g Citrus clementina HOM05D007963 ORTHO05D009967 1.7e-15 86.3 125 44.0
FvH4_5g32100 Fragaria vesca HOM05D007963 ORTHO05D009967 8.5e-15 84.0 121 46.3
Atru.chr11.2601 Acer truncatum HOM05D007963 ORTHO05D009967 3.2e-14 82.0 128 40.6
Duzib133G0999 Durio zibethinus HOM05D007963 ORTHO05D009967 4.2e-14 81.6 126 42.1
QL04p008099 Quercus lobata HOM05D007963 ORTHO05D009967 9.4e-14 80.5 123 46.3
QL04p008549 Quercus lobata HOM05D007963 ORTHO05D009967 9.4e-14 80.5 123 46.3
VMungo1127G0040 Vigna mungo HOM05D007963 ORTHO05D009967 1.6e-13 79.7 110 42.7
Cfa010795 Carpinus fangiana HOM05D007963 ORTHO05D009967 6.1e-13 77.8 127 43.3
Phvul.011G012801 Phaseolus vulgaris HOM05D007963 ORTHO05D009967 6.1e-13 77.8 62 62.9
Glyma.12G008400 Glycine max HOM05D007963 ORTHO05D009967 1.4e-12 76.6 111 44.1
CiPaw.14G001400 Carya illinoinensis HOM05D007963 ORTHO05D009967 1.8e-12 76.3 125 44.0
Prupe.2G017200 Prunus persica HOM05D007963 ORTHO05D009967 3.0e-12 75.5 102 47.1
COL.COLO4_04871 Corchorus olitorius HOM05D007963 ORTHO05D009967 3.9e-12 75.1 103 44.7
Haze_03176 Corylus avellana HOM05D007963 ORTHO05D009967 3.9e-12 75.1 129 41.1
CsaV3_3G032070 Cucumis sativus L. HOM05D007963 ORTHO05D009967 3.9e-12 75.1 130 41.5
MD02G1308200 Malus domestica HOM05D007963 ORTHO05D009967 6.7e-12 74.3 85 48.2
Thecc.01G408600 Theobroma cacao HOM05D007963 ORTHO05D009967 6.7e-12 74.3 128 38.3
RcHm_v2.0_Chr7g0228141 Rosa chinensis HOM05D007963 ORTHO05D009967 1.1e-11 73.6 105 41.9
Sed0005364 Sechium edule HOM05D007963 ORTHO05D009967 1.1e-11 73.6 127 43.3
unitig_61.g26362 Utricularia gibba HOM05D007963 ORTHO05D009967 1.1e-11 73.6 91 49.5
MELO3C023985.2 Cucumis melo HOM05D007963 ORTHO05D009967 1.5e-11 73.2 130 41.5
Lalb_Chr20g0107921 Lupinus albus HOM05D007963 ORTHO05D009967 1.5e-11 73.2 119 44.5
Cpa.g.sc125.16 Carica papaya HOM05D007963 ORTHO05D009967 2.5e-11 72.4 92 47.8
MSTRG.20574 Avicennia marina HOM05D007963 ORTHO05D009967 3.3e-11 72.0 91 46.2
CiPaw.13G006800 Carya illinoinensis HOM05D007963 ORTHO05D009967 5.7e-11 71.2 106 39.6
Potri.009G059100 Populus trichocarpa HOM05D007963 ORTHO05D009967 5.7e-11 71.2 118 38.1
Hma1.2p1_2160F.1_g315600 Hydrangea macrophylla HOM05D007963 ORTHO05D009967 7.4e-11 70.9 72 55.6
PGSC0003DMG400023738 Solanum tuberosum HOM05D007963 ORTHO05D009967 7.4e-11 70.9 85 49.4
TAR369G0233 Trochodendron aralioides HOM05D007963 ORTHO05D009967 7.4e-11 70.9 119 40.3
vmacro13678 Vaccinium macrocarpon HOM05D007963 ORTHO05D009967 9.7e-11 70.5 91 46.2
SalBow5G1437 Salvia bowleyana HOM05D007963 ORTHO05D009967 1.3e-10 70.1 120 40.0
SalBow5G4167 Salvia bowleyana HOM05D007963 ORTHO05D009967 1.3e-10 70.1 120 40.0
Sopen10g031160 Solanum pennellii HOM05D007963 ORTHO05D009967 2.2e-10 69.3 84 48.8
Rhsim07G0056600 Rhododendron simsii HOM05D007963 ORTHO05D009967 2.8e-10 68.9 98 43.9
Lj3g0025556 Lotus japonicus HOM05D007963 ORTHO05D009967 6.3e-10 67.8 114 40.4
ClCG10G012280 Citrullus lanatus HOM05D007963 ORTHO05D009967 1.1e-09 67.0 134 40.3
Eucgr.J01210 Eucalyptus grandis HOM05D007963 ORTHO05D009967 1.1e-09 67.0 130 42.3
Manes.07G007300 Manihot esculenta HOM05D007963 ORTHO05D009967 1.4e-09 66.6 115 40.0
Gohir.A08G143400 Gossypium hirsutum HOM05D007963 ORTHO05D009967 2.4e-09 65.9 63 57.1
Gorai.004G171400 Gossypium raimondii HOM05D007963 ORTHO05D009967 2.4e-09 65.9 63 57.1
Gohir.D08G164400 Gossypium hirsutum HOM05D007963 ORTHO05D009967 3.1e-09 65.5 63 57.1
CSS0005909 Camellia sinensis var. sinensis HOM05D007963 ORTHO05D009967 4.1e-09 65.1 83 45.8
AUR62009397 Chenopodium quinoa HOM05D007963 ORTHO05D009967 4.1e-09 65.1 90 41.1
HanXRQChr01g0016481 Helianthus annuus HOM05D007963 ORTHO05D009967 4.1e-09 65.1 43 67.4
MBI04_g34432_MAGBIO Magnolia biondii HOM05D007963 ORTHO05D009967 5.3e-09 64.7 64 56.2
Sc23g0005920 Simmondsia chinensis HOM05D007963 ORTHO05D009967 6.9e-09 64.3 62 51.6
DCAR_003219 Daucus carota HOM05D007963 ORTHO05D009967 9.1e-09 63.9 111 39.6
Sed0018324 Sechium edule HOM05D007963 ORTHO05D009967 9.1e-09 63.9 118 39.8
Nn2g15279 Nelumbo nucifera HOM05D007963 ORTHO05D009967 1.2e-08 63.5 75 48.0
EL10Ac2g04344 Beta vulgaris HOM05D002263 ORTHO05D003537 1.5e-08 63.2 76 43.4
Migut.B01286 Erythranthe guttata HOM05D007963 ORTHO05D009967 1.5e-08 63.2 96 42.7
Medtr4g039540 Medicago truncatula HOM05D007963 ORTHO05D009967 2.0e-08 62.8 38 76.3
Lsat_1_v5_gn_1_105740 Lactuca sativa HOM05D007963 ORTHO05D009967 3.4e-08 62.0 57 54.4
TWI09G0461 Tripterygium wilfordii HOM05D007963 ORTHO05D009967 4.5e-08 61.6 58 62.1
SEGI_13442 Sequoiadendron giganteum HOM05D007963 ORTHO05D009967 1.7e-07 59.7 68 45.6
SEGI_37070 Sequoiadendron giganteum HOM05D007963 ORTHO05D009967 1.7e-07 59.7 68 45.6
SGA_v2.0_scaffold4G02518 Striga asiatica HOM05D007963 ORTHO05D009967 8.5e-07 57.4 63 47.6
Sabra09G0043500 Salix brachista HOM05D007963 ORTHO05D009967 1.1e-06 57.0 109 38.5
Os03g0217000 Oryza sativa ssp. japonica HOM05D007963 ORTHO05D009967 1.9e-06 56.2 52 55.8
Zm00001eb400040 Zea mays HOM05D007963 ORTHO05D009967 4.2e-06 55.1 38 65.8


User provided reference genes

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