Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR160590 Cardamine hirsuta HOM05D005654 ORTHO05D006438 7.2e-56 220.3 109 100.0
Carub.0005s1741 Capsella rubella HOM05D005654 ORTHO05D006438 6.5e-41 170.6 93 88.2
AL5G31430 Arabidopsis lyrata HOM05D005654 ORTHO05D006438 9.4e-40 166.8 93 86.0
AT3G51010 Arabidopsis thaliana HOM05D005654 ORTHO05D006438 2.1e-39 165.6 93 86.0
Thhalv10010748m.g Eutrema salsugineum HOM05D005654 ORTHO05D006438 4.4e-37 157.9 93 83.9
Sp5g11200 Schrenkiella parvula HOM05D005654 ORTHO05D006438 3.7e-36 154.8 93 82.8
BcaNung00403 Brassica carinata HOM05D005654 ORTHO05D006438 5.0e-33 144.4 93 77.4
C07p46090 Brassica napus HOM05D000363 ORTHO05D005000 1.5e-32 142.9 93 80.6
BolC7t45125H Brassica oleracea HOM05D000363 ORTHO05D005000 1.5e-32 142.9 93 80.6
BcaB01g00554 Brassica carinata HOM05D005654 ORTHO05D006438 4.2e-32 141.4 94 74.5
BcaC07g39579 Brassica carinata HOM05D005654 ORTHO05D006438 5.5e-32 141.0 93 78.5
C08p26310 Brassica napus HOM05D005654 ORTHO05D006438 5.5e-32 141.0 93 78.5
BcaC06g33063 Brassica carinata HOM05D005654 ORTHO05D006438 7.2e-32 140.6 93 79.6
BolC8t50249H Brassica oleracea HOM05D005654 ORTHO05D006438 9.4e-32 140.2 93 78.5
A09p44110 Brassica napus HOM05D000363 ORTHO05D006438 1.6e-31 139.4 93 78.5
BraA09t39870Z Brassica rapa HOM05D005654 ORTHO05D006438 1.6e-31 139.4 93 78.5
BraA03t13914Z Brassica rapa HOM05D000363 ORTHO05D005000 2.7e-31 138.7 93 78.5
A03p48070 Brassica napus HOM05D000363 ORTHO05D005000 1.4e-30 136.3 93 77.4
Aa31LG4G19130 Aethionema arabicum HOM05D005654 ORTHO05D006438 6.8e-30 134.0 93 73.1
THA.LOC104819191 Tarenaya hassleriana HOM05D005654 ORTHO05D006438 7.5e-21 104.0 93 61.3
Hma1.2p1_1114F.1_g258780 Hydrangea macrophylla HOM05D005654 ORTHO05D006438 2.5e-16 89.0 94 51.1
COL.COLO4_21992 Corchorus olitorius HOM05D005654 ORTHO05D006438 4.3e-16 88.2 93 52.7
TWI60G0108 Tripterygium wilfordii HOM05D005654 ORTHO05D006438 5.6e-16 87.8 96 52.1
Haze_03832 Corylus avellana HOM05D005654 ORTHO05D006438 1.2e-15 86.7 93 48.4
Thecc.01G026300 Theobroma cacao HOM05D005654 ORTHO05D006438 1.2e-15 86.7 93 51.6
Dinv33576 Davidia involucrata HOM05D005654 ORTHO05D006438 2.8e-15 85.5 94 50.0
GSVIVG01018856001 Vitis vinifera HOM05D005654 ORTHO05D006438 3.6e-15 85.1 93 51.6
Ciclev10003765m.g Citrus clementina HOM05D005654 ORTHO05D006438 4.7e-15 84.7 93 50.5
CiPaw.08G137200 Carya illinoinensis HOM05D005654 ORTHO05D006438 2.3e-14 82.4 93 45.2
QL08p063081 Quercus lobata HOM05D005654 ORTHO05D006438 2.3e-14 82.4 97 47.4
Lj4A211T64 Lonicera japonica HOM05D005654 ORTHO05D006438 8.9e-14 80.5 103 48.5
Sopen04g003980 Solanum pennellii HOM05D005654 ORTHO05D006438 8.9e-14 80.5 94 47.9
CANSAT01G3286 Cannabis sativa HOM05D005654 ORTHO05D006438 1.5e-13 79.7 93 48.4
FAN24G1434 Fragaria x ananassa HOM05D005654 ORTHO05D006438 1.5e-13 79.7 101 48.5
FvH4_2g15150 Fragaria vesca HOM05D005654 ORTHO05D006438 2.6e-13 79.0 94 48.9
MD05G1010700 Malus domestica HOM05D005654 ORTHO05D006438 3.4e-13 78.6 97 50.5
RcHm_v2.0_Chr6g0277811 Rosa chinensis HOM05D005654 ORTHO05D006438 3.4e-13 78.6 94 48.9
PGSC0003DMG400025306 Solanum tuberosum HOM05D005654 ORTHO05D006438 3.4e-13 78.6 94 47.9
QL06p034798 Quercus lobata HOM05D005654 ORTHO05D006438 4.4e-13 78.2 92 47.8
QL10p007390 Quercus lobata HOM05D005654 ORTHO05D006438 4.4e-13 78.2 92 47.8
Solyc04g008800.3 Solanum lycopersicum HOM05D005654 ORTHO05D006438 4.4e-13 78.2 94 47.9
CAN.G419.13 Capsicum annuum HOM05D005654 ORTHO05D006438 5.8e-13 77.8 100 50.0
Cpa.g.sc217.22 Carica papaya HOM05D005654 ORTHO05D006438 7.5e-13 77.4 94 48.9
Nitab4.5_0007445g0010 Nicotiana tabacum HOM05D005654 ORTHO05D006438 7.5e-13 77.4 94 48.9
MD10G1009400 Malus domestica HOM05D005654 ORTHO05D006438 9.8e-13 77.0 103 45.6
Gohir.A11G179400 Gossypium hirsutum HOM05D005654 ORTHO05D006438 1.3e-12 76.6 97 46.4
CSS0048601 Camellia sinensis var. sinensis HOM05D005654 ORTHO05D006438 2.2e-12 75.9 93 48.4
Lj2A460T79 Lonicera japonica HOM05D005654 ORTHO05D006438 2.2e-12 75.9 93 49.5
CsaV3_5G027780 Cucumis sativus L. HOM05D005654 ORTHO05D006438 3.7e-12 75.1 95 47.4
Lalb_Chr06g0172541 Lupinus albus HOM05D005654 ORTHO05D006438 3.7e-12 75.1 97 45.4
Nitab4.5_0002707g0030 Nicotiana tabacum HOM05D005654 ORTHO05D006438 4.9e-12 74.7 95 48.4
SalBow8G3171 Salvia bowleyana HOM05D005654 ORTHO05D006438 4.9e-12 74.7 95 48.4
Actinidia26105 Actinidia chinensis HOM05D005654 ORTHO05D006438 8.3e-12 73.9 93 46.2
FAN07G1349 Fragaria x ananassa HOM05D005654 ORTHO05D006438 1.1e-11 73.6 94 46.8
TAR381G0206 Trochodendron aralioides HOM05D005654 ORTHO05D006438 1.1e-11 73.6 93 46.2
ClCG09G019610 Citrullus lanatus HOM05D005654 ORTHO05D006438 1.4e-11 73.2 93 46.2
MELO3C005244.2 Cucumis melo HOM05D005654 ORTHO05D006438 1.4e-11 73.2 95 46.3
MSTRG.23266 Avicennia marina HOM05D005654 ORTHO05D006438 2.4e-11 72.4 93 45.2
Rhsim08G0123600 Rhododendron simsii HOM05D005654 ORTHO05D006438 3.2e-11 72.0 94 47.9
Gohir.D11G187100 Gossypium hirsutum HOM05D005654 ORTHO05D006438 7.0e-11 70.9 96 47.9
Gorai.007G199000 Gossypium raimondii HOM05D005654 ORTHO05D006438 1.2e-10 70.1 96 47.9
Nn1g05784 Nelumbo nucifera HOM05D005654 ORTHO05D006438 1.6e-10 69.7 93 44.1
Migut.H02503 Erythranthe guttata HOM05D005654 ORTHO05D006438 2.7e-10 68.9 93 44.1
Prupe.8G013400 Prunus persica HOM05D005654 ORTHO05D006438 2.7e-10 68.9 94 45.7
DCAR_025978 Daucus carota HOM05D005654 ORTHO05D006438 3.5e-10 68.6 93 45.2
Potri.007G018300 Populus trichocarpa HOM05D005654 ORTHO05D006438 3.5e-10 68.6 100 44.0
Sabra07G0015400 Salix brachista HOM05D005654 ORTHO05D006438 3.5e-10 68.6 100 43.0
Oeu021744.2 Olea europaea HOM05D005654 ORTHO05D006438 4.6e-10 68.2 93 43.0
Cc07_g10180 Coffea canephora HOM05D005654 ORTHO05D006438 6.0e-10 67.8 97 43.3
FAN17G0825 Fragaria x ananassa HOM05D005654 ORTHO05D006438 6.0e-10 67.8 94 44.7
Nn5g29728 Nelumbo nucifera HOM05D005654 ORTHO05D006438 6.0e-10 67.8 93 41.9
Eucgr.H02778 Eucalyptus grandis HOM05D005654 ORTHO05D006438 7.8e-10 67.4 94 45.7
SGA_v2.0_scaffold280G46859 Striga asiatica HOM05D005654 ORTHO05D006438 7.8e-10 67.4 93 44.1
FAN22G0080 Fragaria x ananassa HOM05D005654 ORTHO05D006438 1.7e-09 66.2 94 43.6
Sed0005955 Sechium edule HOM05D005654 ORTHO05D006438 3.0e-09 65.5 93 46.2
FvH4_4g16440 Fragaria vesca HOM05D005654 ORTHO05D006438 3.9e-09 65.1 94 43.6
FAN12G4326 Fragaria x ananassa HOM05D005654 ORTHO05D006438 3.9e-09 65.1 94 43.6
Manes.02G099200 Manihot esculenta HOM05D005654 ORTHO05D006438 6.6e-09 64.3 100 38.0
PSO170G2173 Papaver somniferum HOM05D005654 ORTHO05D006438 6.6e-09 64.3 94 43.6
PGR119G1083 Punica granatum HOM05D005654 ORTHO05D006438 1.5e-08 63.2 97 43.3
Peaxi162Scf00329g00119 Petunia axillaris HOM05D005654 ORTHO05D006438 2.5e-08 62.4 97 40.2
Lj3g0016616 Lotus japonicus HOM05D005654 ORTHO05D006438 7.3e-08 60.8 99 43.4
Manes.01G140500 Manihot esculenta HOM05D005654 ORTHO05D006438 7.3e-08 60.8 101 41.6
PSO528G0264 Papaver somniferum HOM05D005654 ORTHO05D006438 1.6e-07 59.7 94 40.4
Ca_14022_v3 Cicer arietinum L. HOM05D005654 ORTHO05D006438 3.6e-07 58.5 96 40.6
Glyma.13G002400 Glycine max HOM05D005654 ORTHO05D006438 4.7e-07 58.2 100 44.0
Lj5g0021075 Lotus japonicus HOM05D005654 ORTHO05D006438 6.2e-07 57.8 96 42.7
Ah.08g209860 Amaranthus hybridus HOM05D005654 ORTHO05D006438 8.0e-07 57.4 106 39.6
arahy.Tifrunner.gnm1.ann1.IV76VY Arachis hypogaea HOM05D005654 ORTHO05D006438 8.0e-07 57.4 101 43.6
PSO339G4156 Papaver somniferum HOM05D005654 ORTHO05D006438 8.0e-07 57.4 94 40.4
Lsat_1_v5_gn_9_115780 Lactuca sativa HOM05D005654 ORTHO05D006438 1.1e-06 57.0 95 46.3
MBI01_g45163_MAGBIO Magnolia biondii HOM05D005654 ORTHO05D006438 1.8e-06 56.2 101 39.6
VMungo0331G0515 Vigna mungo HOM05D005654 ORTHO05D006438 1.8e-06 56.2 95 43.2
Phvul.010G058900 Phaseolus vulgaris HOM05D005654 ORTHO05D006438 2.3e-06 55.8 99 43.4
Lalb_Chr02g0154671 Lupinus albus HOM05D005654 ORTHO05D006438 3.1e-06 55.5 57 52.6


User provided reference genes

Program Settings