Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR160580 Cardamine hirsuta HOM05D005654 ORTHO05D006438 1.1e-48 196.4 105 100.0
AT3G51010 Arabidopsis thaliana HOM05D005654 ORTHO05D006438 3.8e-38 161.4 97 91.8
Sp5g11200 Schrenkiella parvula HOM05D005654 ORTHO05D006438 8.5e-38 160.2 105 86.7
Carub.0005s1741 Capsella rubella HOM05D005654 ORTHO05D006438 9.4e-37 156.8 97 88.7
BraA09t39870Z Brassica rapa HOM05D005654 ORTHO05D006438 4.7e-36 154.5 105 82.9
BcaNung00403 Brassica carinata HOM05D005654 ORTHO05D006438 1.0e-35 153.3 105 81.9
Thhalv10010748m.g Eutrema salsugineum HOM05D005654 ORTHO05D006438 1.0e-35 153.3 97 87.6
AL5G31430 Arabidopsis lyrata HOM05D005654 ORTHO05D006438 2.3e-35 152.1 97 86.6
BcaC06g33063 Brassica carinata HOM05D005654 ORTHO05D006438 3.9e-35 151.4 105 81.0
A09p44110 Brassica napus HOM05D000363 ORTHO05D006438 5.1e-35 151.0 102 82.4
BraA03t13914Z Brassica rapa HOM05D000363 ORTHO05D005000 1.5e-34 149.4 102 81.4
A03p48070 Brassica napus HOM05D000363 ORTHO05D005000 4.4e-34 147.9 102 80.4
C07p46090 Brassica napus HOM05D000363 ORTHO05D005000 4.4e-34 147.9 102 80.4
BolC7t45125H Brassica oleracea HOM05D000363 ORTHO05D005000 4.4e-34 147.9 102 80.4
BcaC07g39579 Brassica carinata HOM05D005654 ORTHO05D006438 1.3e-33 146.4 105 79.0
C08p26310 Brassica napus HOM05D005654 ORTHO05D006438 1.3e-33 146.4 105 79.0
BolC8t50249H Brassica oleracea HOM05D005654 ORTHO05D006438 1.3e-33 146.4 105 79.0
BcaB01g00554 Brassica carinata HOM05D005654 ORTHO05D006438 2.2e-30 135.6 105 74.3
CAN.G419.13 Capsicum annuum HOM05D005654 ORTHO05D006438 2.2e-30 135.6 94 77.7
PGSC0003DMG400025306 Solanum tuberosum HOM05D005654 ORTHO05D006438 2.9e-30 135.2 91 80.2
Solyc04g008800.3 Solanum lycopersicum HOM05D005654 ORTHO05D006438 3.8e-30 134.8 91 80.2
Sopen04g003980 Solanum pennellii HOM05D005654 ORTHO05D006438 3.8e-30 134.8 91 80.2
THA.LOC104819191 Tarenaya hassleriana HOM05D005654 ORTHO05D006438 5.0e-30 134.4 97 76.3
Nitab4.5_0002707g0030 Nicotiana tabacum HOM05D005654 ORTHO05D006438 1.1e-29 133.3 94 77.7
Nitab4.5_0007445g0010 Nicotiana tabacum HOM05D005654 ORTHO05D006438 1.9e-29 132.5 94 77.7
QL06p034798 Quercus lobata HOM05D005654 ORTHO05D006438 3.2e-29 131.7 94 76.6
QL10p007390 Quercus lobata HOM05D005654 ORTHO05D006438 3.2e-29 131.7 94 76.6
RcHm_v2.0_Chr6g0277811 Rosa chinensis HOM05D005654 ORTHO05D006438 4.2e-29 131.3 94 77.7
FAN17G0825 Fragaria x ananassa HOM05D005654 ORTHO05D006438 5.5e-29 131.0 94 76.6
FAN22G0080 Fragaria x ananassa HOM05D005654 ORTHO05D006438 5.5e-29 131.0 94 76.6
Lalb_Chr06g0172541 Lupinus albus HOM05D005654 ORTHO05D006438 5.5e-29 131.0 94 76.6
CSS0048601 Camellia sinensis var. sinensis HOM05D005654 ORTHO05D006438 7.2e-29 130.6 94 75.5
Glyma.13G002400 Glycine max HOM05D005654 ORTHO05D006438 7.2e-29 130.6 95 74.7
Gohir.A11G179400 Gossypium hirsutum HOM05D005654 ORTHO05D006438 9.4e-29 130.2 94 76.6
Gohir.D11G187100 Gossypium hirsutum HOM05D005654 ORTHO05D006438 9.4e-29 130.2 94 76.6
Gorai.007G199000 Gossypium raimondii HOM05D005654 ORTHO05D006438 9.4e-29 130.2 94 76.6
Glyma.16G220800 Glycine max HOM05D005654 ORTHO05D006438 1.6e-28 129.4 95 73.7
FAN07G1349 Fragaria x ananassa HOM05D005654 ORTHO05D006438 2.7e-28 128.6 94 75.5
QL08p063081 Quercus lobata HOM05D005654 ORTHO05D006438 2.7e-28 128.6 94 75.5
ClCG09G019610 Citrullus lanatus HOM05D005654 ORTHO05D006438 3.6e-28 128.3 94 74.5
Aa31LG4G19130 Aethionema arabicum HOM05D005654 ORTHO05D006438 4.7e-28 127.9 94 76.6
Glyma.20G066700 Glycine max HOM05D005654 ORTHO05D006438 8.0e-28 127.1 95 73.7
Thecc.01G026300 Theobroma cacao HOM05D005654 ORTHO05D006438 8.0e-28 127.1 94 73.4
FvH4_2g15150 Fragaria vesca HOM05D005654 ORTHO05D006438 1.0e-27 126.7 94 75.5
Peaxi162Scf00329g00119 Petunia axillaris HOM05D005654 ORTHO05D006438 1.0e-27 126.7 94 74.5
Sed0005955 Sechium edule HOM05D005654 ORTHO05D006438 1.0e-27 126.7 94 74.5
Ca_14022_v3 Cicer arietinum L. HOM05D005654 ORTHO05D006438 1.4e-27 126.3 95 73.7
Medtr8g077440 Medicago truncatula HOM05D005654 ORTHO05D006438 1.4e-27 126.3 95 72.6
MELO3C005244.2 Cucumis melo HOM05D005654 ORTHO05D006438 1.8e-27 125.9 94 73.4
Lj3g0016616 Lotus japonicus HOM05D005654 ORTHO05D006438 1.8e-27 125.9 94 73.4
CsaV3_5G027780 Cucumis sativus L. HOM05D005654 ORTHO05D006438 2.3e-27 125.6 94 73.4
Sabra07G0015400 Salix brachista HOM05D005654 ORTHO05D006438 2.3e-27 125.6 94 73.4
Eucgr.H02778 Eucalyptus grandis HOM05D005654 ORTHO05D006438 3.0e-27 125.2 94 74.5
COL.COLO4_21992 Corchorus olitorius HOM05D005654 ORTHO05D006438 5.2e-27 124.4 94 74.5
Lsat_1_v5_gn_9_115780 Lactuca sativa HOM05D005654 ORTHO05D006438 5.2e-27 124.4 93 71.0
Lj5g0021075 Lotus japonicus HOM05D005654 ORTHO05D006438 5.2e-27 124.4 94 71.3
Cc07_g10180 Coffea canephora HOM05D005654 ORTHO05D006438 8.8e-27 123.6 94 71.3
Dinv33575 Davidia involucrata HOM05D005654 ORTHO05D006438 8.8e-27 123.6 94 71.3
Nn1g05784 Nelumbo nucifera HOM05D005654 ORTHO05D006438 8.8e-27 123.6 94 72.3
Phvul.010G058900 Phaseolus vulgaris HOM05D005654 ORTHO05D006438 8.8e-27 123.6 91 72.5
Prupe.8G013400 Prunus persica HOM05D005654 ORTHO05D006438 8.8e-27 123.6 94 73.4
FvH4_4g16440 Fragaria vesca HOM05D005654 ORTHO05D006438 1.1e-26 123.2 94 73.4
FAN12G4326 Fragaria x ananassa HOM05D005654 ORTHO05D006438 1.1e-26 123.2 94 73.4
Manes.01G140500 Manihot esculenta HOM05D005654 ORTHO05D006438 1.5e-26 122.9 94 73.4
CANSAT01G3286 Cannabis sativa HOM05D005654 ORTHO05D006438 2.0e-26 122.5 93 73.1
CiPaw.08G137200 Carya illinoinensis HOM05D005654 ORTHO05D006438 2.0e-26 122.5 94 73.4
TWI60G0108 Tripterygium wilfordii HOM05D005654 ORTHO05D006438 2.0e-26 122.5 94 73.4
Cfa006918 Carpinus fangiana HOM05D005654 ORTHO05D006438 3.3e-26 121.7 98 70.4
Manes.02G099200 Manihot esculenta HOM05D005654 ORTHO05D006438 3.3e-26 121.7 93 72.0
Migut.H02503 Erythranthe guttata HOM05D005654 ORTHO05D006438 4.4e-26 121.3 93 69.9
TAR381G0206 Trochodendron aralioides HOM05D005654 ORTHO05D006438 4.4e-26 121.3 97 70.1
VMungo0331G0515 Vigna mungo HOM05D005654 ORTHO05D006438 4.4e-26 121.3 91 72.5
Haze_03832 Corylus avellana HOM05D005654 ORTHO05D006438 5.7e-26 120.9 93 73.1
Hma1.2p1_1114F.1_g258780 Hydrangea macrophylla HOM05D005654 ORTHO05D006438 7.5e-26 120.6 94 70.2
Sed0001903 Sechium edule HOM05D005654 ORTHO05D006438 1.3e-25 119.8 93 69.9
PSO528G0264 Papaver somniferum HOM05D005654 ORTHO05D006438 4.8e-25 117.9 90 73.3
PSO170G2173 Papaver somniferum HOM05D005654 ORTHO05D006438 1.1e-24 116.7 90 73.3
arahy.Tifrunner.gnm1.ann1.I9PPQ0 Arachis hypogaea HOM05D005654 ORTHO05D006438 2.4e-24 115.5 93 68.8
HanXRQChr10g0278901 Helianthus annuus HOM05D005654 ORTHO05D006438 2.4e-24 115.5 94 66.0
PSO339G4156 Papaver somniferum HOM05D005654 ORTHO05D006438 2.4e-24 115.5 90 72.2
TPR.G24134 Trifolium pratense HOM05D005654 ORTHO05D006438 2.4e-24 115.5 95 68.4
arahy.Tifrunner.gnm1.ann1.IV76VY Arachis hypogaea HOM05D005654 ORTHO05D006438 3.1e-24 115.2 94 68.1
Dinv33576 Davidia involucrata HOM05D005654 ORTHO05D006438 3.1e-24 115.2 88 70.5
Oeu035320.1 Olea europaea HOM05D005654 ORTHO05D006438 3.1e-24 115.2 93 68.8
ECA248G0981 Erigeron canadensis HOM05D005654 ORTHO05D006438 4.1e-24 114.8 93 67.7
PGR119G1083 Punica granatum HOM05D005654 ORTHO05D006438 4.1e-24 114.8 94 69.1
GSVIVG01018856001 Vitis vinifera HOM05D005654 ORTHO05D006438 4.1e-24 114.8 94 70.2
Actinidia26105 Actinidia chinensis HOM05D005654 ORTHO05D006438 5.3e-24 114.4 94 69.1
Lj2A460T79 Lonicera japonica HOM05D005654 ORTHO05D006438 2.7e-23 112.1 91 70.3
Aqoxy6G01210 Aquilegia oxysepala HOM05D005654 ORTHO05D006438 3.5e-23 111.7 90 67.8
MSTRG.23266 Avicennia marina HOM05D005654 ORTHO05D006438 1.0e-22 110.2 93 63.4
MBI01_g45163_MAGBIO Magnolia biondii HOM05D005654 ORTHO05D006438 1.0e-22 110.2 92 67.4
MD05G1010700 Malus domestica HOM05D005654 ORTHO05D006438 1.0e-22 110.2 94 68.1
TWI09G1445 Tripterygium wilfordii HOM05D005654 ORTHO05D006438 1.0e-22 110.2 90 70.0
SalBow8G3171 Salvia bowleyana HOM05D005654 ORTHO05D006438 5.0e-22 107.8 92 66.3
MD10G1009400 Malus domestica HOM05D005654 ORTHO05D006438 1.1e-21 106.7 94 66.0
Sc18g0007030 Simmondsia chinensis HOM05D005654 ORTHO05D006438 1.9e-21 105.9 92 64.1
SGA_v2.0_scaffold9G04932 Striga asiatica HOM05D005654 ORTHO05D006438 2.5e-21 105.5 93 63.4
HPP92_013005 Vanilla planifolia HOM05D005654 ORTHO05D006438 2.1e-20 102.4 97 57.7
Oeu021744.2 Olea europaea HOM05D005654 ORTHO05D006438 6.1e-20 100.9 143 46.9
Lj4A211T64 Lonicera japonica HOM05D005654 ORTHO05D006438 1.4e-19 99.8 89 64.0
FAN20G0529 Fragaria x ananassa HOM05D005654 ORTHO05D006438 2.3e-19 99.0 82 70.7
Hund00373 Selenicereus undatus HOM05D005654 ORTHO05D006438 3.4e-18 95.1 93 59.1
EL10Ac9g22080 Beta vulgaris HOM05D005654 ORTHO05D006438 7.5e-18 94.0 119 48.7
CDE04G0601 Ceratophyllum demersum HOM05D005654 ORTHO05D006438 1.3e-17 93.2 95 60.0
CDE12G0226 Ceratophyllum demersum HOM05D005654 ORTHO05D006438 1.7e-17 92.8 95 60.0
ATR0605G129 Amborella trichopoda HOM05D005654 ORTHO05D006438 1.2e-15 86.7 93 54.8
Zm00001eb265250 Zea mays HOM05D005654 ORTHO05D006438 1.6e-15 86.3 94 53.2
Zm00001eb414250 Zea mays HOM05D005654 ORTHO05D006438 1.6e-15 86.3 94 54.3
FAN15G1271 Fragaria x ananassa HOM05D005654 ORTHO05D006438 4.5e-15 84.7 60 81.7
AUR62027117 Chenopodium quinoa HOM05D005654 ORTHO05D006438 1.0e-14 83.6 93 54.8
AUR62012893 Chenopodium quinoa HOM05D005654 ORTHO05D006438 2.9e-14 82.0 94 52.1
Os05g0126200 Oryza sativa ssp. japonica HOM05D005654 ORTHO05D006438 8.5e-14 80.5 91 51.6
Zm00001eb355020 Zea mays HOM05D005654 ORTHO05D006438 8.5e-14 80.5 98 51.0
MBI01_g11791_MAGBIO Magnolia biondii HOM05D005654 ORTHO05D006438 3.4e-10 68.6 141 39.7
Ciclev10003765m.g Citrus clementina HOM05D005654 ORTHO05D006438 5.7e-10 67.8 41 78.0
Rhsim08G0123600 Rhododendron simsii HOM05D005654 ORTHO05D006438 5.7e-10 67.8 54 72.2
DCAR_025978 Daucus carota HOM05D005654 ORTHO05D006438 9.8e-10 67.0 97 50.5
Zm00001eb035810 Zea mays HOM05D005654 ORTHO05D006438 3.1e-08 62.0 77 49.4
Cpa.g.sc217.22 Carica papaya HOM05D005654 ORTHO05D006438 5.4e-08 61.2 47 68.1
Potri.007G018300 Populus trichocarpa HOM05D005654 ORTHO05D006438 7.0e-08 60.8 41 70.7
Zm00001eb078300 Zea mays HOM05D000349 ORTHO05D010734 1.2e-07 60.1 73 50.7
Zm00001eb309330 Zea mays HOM05D000349 ORTHO05D006438 1.2e-07 60.1 73 50.7
FAN24G2610 Fragaria x ananassa HOM05D005654 ORTHO05D006438 2.0e-07 59.3 43 79.1
Psat0s439g0080 Pisum sativum HOM05D005654 ORTHO05D006438 4.5e-07 58.2 42 69.0
Psat2g190960 Pisum sativum HOM05D005654 ORTHO05D006438 4.5e-07 58.2 42 69.0
FAN24G1434 Fragaria x ananassa HOM05D005654 ORTHO05D006438 5.9e-07 57.8 42 66.7
SGA_v2.0_scaffold280G46859 Striga asiatica HOM05D005654 ORTHO05D006438 1.3e-06 56.6 41 68.3
Nn5g29728 Nelumbo nucifera HOM05D005654 ORTHO05D006438 2.9e-06 55.5 41 68.3


User provided reference genes

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