Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR159370 Cardamine hirsuta HOM05D005619 ORTHO05D006696 2.2e-60 235.3 113 100.0
CARHR165540 Cardamine hirsuta HOM05D005619 ORTHO05D006696 2.6e-56 221.9 113 92.9
Thhalv10017287m.g Eutrema salsugineum HOM05D005619 ORTHO05D006696 9.1e-54 213.4 113 87.6
Carub.0005s2221 Capsella rubella HOM05D005619 ORTHO05D006696 2.0e-53 212.2 113 90.3
A04p30090 Brassica napus HOM05D005619 ORTHO05D006696 1.0e-52 209.9 113 87.6
BraA04t18498Z Brassica rapa HOM05D005619 ORTHO05D006696 5.0e-52 207.6 113 86.7
AL5G36640 Arabidopsis lyrata HOM05D005619 ORTHO05D006696 6.5e-52 207.2 113 87.6
AT1G19080 Arabidopsis thaliana HOM05D005619 ORTHO05D006696 1.1e-51 206.5 113 86.7
AT3G55490 Arabidopsis thaliana HOM05D005619 ORTHO05D006696 1.1e-51 206.5 113 86.7
BolC4t28280H Brassica oleracea HOM05D005619 ORTHO05D006696 1.1e-51 206.5 113 86.7
BcaNung05464 Brassica carinata HOM05D005619 ORTHO05D006696 1.9e-51 205.7 113 85.8
BcaC02g07392 Brassica carinata HOM05D005619 ORTHO05D006696 2.5e-51 205.3 113 85.8
CARHR135030 Cardamine hirsuta HOM05D005619 ORTHO05D006696 9.4e-51 203.4 113 85.0
BcaC02g07350 Brassica carinata HOM05D005619 ORTHO05D006696 1.6e-50 202.6 113 85.8
C04p67770 Brassica napus HOM05D005619 ORTHO05D006696 1.6e-50 202.6 113 85.8
THA.LOC104824313 Tarenaya hassleriana HOM05D005619 ORTHO05D006696 8.0e-50 200.3 113 81.4
Sp4g22380 Schrenkiella parvula HOM05D005619 ORTHO05D006696 3.0e-49 198.4 113 81.4
Cpa.g.sc19.176 Carica papaya HOM05D005619 ORTHO05D006696 9.1e-46 186.8 113 76.1
Duzib128G1619 Durio zibethinus HOM05D005619 ORTHO05D006696 2.1e-42 175.6 113 72.6
Gohir.A06G163800 Gossypium hirsutum HOM05D005619 ORTHO05D006696 2.7e-42 175.3 113 71.7
Gohir.D06G169500 Gossypium hirsutum HOM05D005619 ORTHO05D006696 2.7e-42 175.3 113 71.7
Gorai.010G198200 Gossypium raimondii HOM05D005619 ORTHO05D006696 2.7e-42 175.3 113 71.7
Thecc.10G016900 Theobroma cacao HOM05D005619 ORTHO05D006696 6.1e-42 174.1 113 71.7
Duzib114G0170 Durio zibethinus HOM05D005619 ORTHO05D006696 1.0e-41 173.3 113 71.7
Ciclev10033435m.g Citrus clementina HOM05D005619 ORTHO05D006696 4.0e-41 171.4 113 68.1
COL.COLO4_38547 Corchorus olitorius HOM05D005598 ORTHO05D006587 4.0e-41 171.4 113 72.6
Cfa001322 Carpinus fangiana HOM05D005619 ORTHO05D006696 8.8e-41 170.2 113 70.8
Lj6g0025019 Lotus japonicus HOM05D005619 ORTHO05D006696 8.8e-41 170.2 112 68.8
Haze_17223 Corylus avellana HOM05D005619 ORTHO05D006696 1.5e-40 169.5 113 70.8
Atru.chr12.29 Acer truncatum HOM05D005619 ORTHO05D006696 2.6e-40 168.7 113 65.5
arahy.Tifrunner.gnm1.ann1.IDH5I9 Arachis hypogaea HOM05D005619 ORTHO05D006696 1.3e-39 166.4 112 67.0
arahy.Tifrunner.gnm1.ann1.2YL4XG Arachis hypogaea HOM05D005619 ORTHO05D006696 1.7e-39 166.0 112 67.0
Medtr3g070470 Medicago truncatula HOM05D005619 ORTHO05D006696 1.7e-39 166.0 113 69.0
Nn2g11500 Nelumbo nucifera HOM05D005619 ORTHO05D006696 2.2e-39 165.6 112 67.0
TAR633G2706 Trochodendron aralioides HOM05D005619 ORTHO05D006696 2.2e-39 165.6 113 69.9
CiPaw.02G192300 Carya illinoinensis HOM05D000781 ORTHO05D000643 3.7e-39 164.9 112 69.6
Lj1g0018800 Lotus japonicus HOM05D005619 ORTHO05D006696 3.7e-39 164.9 112 67.0
CiPaw.08G091200 Carya illinoinensis HOM05D005619 ORTHO05D006696 8.3e-39 163.7 112 68.8
Lalb_Chr03g0027081 Lupinus albus HOM05D005619 ORTHO05D006696 8.3e-39 163.7 111 67.6
Eucgr.G03057 Eucalyptus grandis HOM05D005619 ORTHO05D006696 1.1e-38 163.3 113 66.4
TAR369G0168 Trochodendron aralioides HOM05D005619 ORTHO05D006696 1.1e-38 163.3 113 69.0
Sabra08G0050000 Salix brachista HOM05D005619 ORTHO05D006696 1.4e-38 162.9 112 67.9
TPR.G16245 Trifolium pratense HOM05D005619 ORTHO05D006696 1.4e-38 162.9 118 65.3
QL08p063145 Quercus lobata HOM05D005619 ORTHO05D006696 3.1e-38 161.8 112 67.9
Psat5g128520 Pisum sativum HOM05D005619 ORTHO05D006696 5.4e-38 161.0 112 66.1
Manes.04G157300 Manihot esculenta HOM05D005619 ORTHO05D006696 9.1e-38 160.2 112 67.0
GSVIVG01032822001 Vitis vinifera HOM05D005619 ORTHO05D006696 1.2e-37 159.8 113 69.9
Potri.008G068100 Populus trichocarpa HOM05D005619 ORTHO05D006696 5.9e-37 157.5 112 66.1
CANSAT56G2799 Cannabis sativa HOM05D005619 ORTHO05D006696 7.7e-37 157.1 112 65.2
Potri.010G189200 Populus trichocarpa HOM05D005619 ORTHO05D006696 1.7e-36 156.0 112 67.0
PGR142G0483 Punica granatum HOM05D005619 ORTHO05D006696 2.2e-36 155.6 113 64.6
COL.COLO4_25718 Corchorus olitorius HOM05D005619 ORTHO05D006696 2.9e-36 155.2 109 69.7
Phvul.001G242800 Phaseolus vulgaris HOM05D005619 ORTHO05D006696 2.9e-36 155.2 112 62.5
Sed0003089 Sechium edule HOM05D005619 ORTHO05D006696 2.9e-36 155.2 109 67.0
VMungo1383G0062 Vigna mungo HOM05D005619 ORTHO05D006696 2.9e-36 155.2 112 62.5
MBI05_g05306_MAGBIO Magnolia biondii HOM05D005619 ORTHO05D006696 3.2e-35 151.8 113 66.4
Aqoxy5G02842 Aquilegia oxysepala HOM05D005619 ORTHO05D006696 4.2e-35 151.4 112 63.4
C04p07340 Brassica napus HOM05D004515 ORTHO05D006013 4.2e-35 151.4 113 67.3
Glyma.11G229600 Glycine max HOM05D005619 ORTHO05D006696 5.5e-35 151.0 112 64.3
Aqoxy4G02564 Aquilegia oxysepala HOM05D005619 ORTHO05D006696 7.2e-35 150.6 109 65.1
CsaV3_6G001830 Cucumis sativus L. HOM05D005619 ORTHO05D006696 7.2e-35 150.6 111 63.1
TWI53G0619 Tripterygium wilfordii HOM05D005619 ORTHO05D006696 9.5e-35 150.2 111 63.1
AUR62034382 Chenopodium quinoa HOM05D005619 ORTHO05D006696 1.2e-34 149.8 114 63.2
Aa31LG5G19540 Aethionema arabicum HOM05D005619 ORTHO05D006696 2.1e-34 149.1 83 81.9
PSO339G2325 Papaver somniferum HOM05D005619 ORTHO05D006696 2.1e-34 149.1 114 64.0
Hund13861 Selenicereus undatus HOM05D005619 ORTHO05D006696 2.8e-34 148.7 113 61.9
CDE04G2394 Ceratophyllum demersum HOM05D005619 ORTHO05D006696 3.6e-34 148.3 112 59.8
Prupe.2G202300 Prunus persica HOM05D005619 ORTHO05D006696 4.7e-34 147.9 112 58.9
Glyma.18G027600 Glycine max HOM05D005619 ORTHO05D006696 6.1e-34 147.5 112 62.5
Prupe.2G249700 Prunus persica HOM05D005619 ORTHO05D006696 1.0e-33 146.7 112 58.0
AUR62022323 Chenopodium quinoa HOM05D005619 ORTHO05D006696 1.4e-33 146.4 114 61.4
FAN06G3728 Fragaria x ananassa HOM05D005619 ORTHO05D006696 1.4e-33 146.4 113 60.2
Sc11g0001040 Simmondsia chinensis HOM05D005619 ORTHO05D006696 3.0e-33 145.2 113 61.9
Lalb_Chr01g0004131 Lupinus albus HOM05D005619 ORTHO05D006696 5.2e-33 144.4 133 54.1
FvH4_7g24440 Fragaria vesca HOM05D005619 ORTHO05D006696 6.8e-33 144.1 113 59.3
FAN01G2425 Fragaria x ananassa HOM05D005619 ORTHO05D006696 6.8e-33 144.1 113 59.3
RcHm_v2.0_Chr1g0370121 Rosa chinensis HOM05D005619 ORTHO05D006696 6.8e-33 144.1 113 59.3
MD01G1152600 Malus domestica HOM05D005619 ORTHO05D006696 8.8e-33 143.7 112 57.1
Zm00001eb412290 Zea mays HOM05D005619 ORTHO05D006696 8.8e-33 143.7 114 60.5
FAN10G0566 Fragaria x ananassa HOM05D005619 ORTHO05D006696 1.5e-32 142.9 113 58.4
Os08g0274700 Oryza sativa ssp. japonica HOM05D005619 ORTHO05D006696 4.4e-32 141.4 114 61.4
Zm00001eb198650 Zea mays HOM05D005619 ORTHO05D006696 5.7e-32 141.0 114 60.5
ClCG11G006160 Citrullus lanatus HOM05D005619 ORTHO05D006696 9.8e-32 140.2 111 60.4
Dinv16155 Davidia involucrata HOM05D005619 ORTHO05D006696 9.8e-32 140.2 113 61.1
Actinidia31994 Actinidia chinensis HOM05D005619 ORTHO05D006696 1.7e-31 139.4 113 63.7
EL10Ac2g04534 Beta vulgaris HOM05D005619 ORTHO05D006696 1.7e-31 139.4 112 59.8
Lj3A878T24 Lonicera japonica HOM05D005619 ORTHO05D006696 2.2e-31 139.0 113 61.1
CSS0006168 Camellia sinensis var. sinensis HOM05D005619 ORTHO05D006696 2.8e-31 138.7 113 65.5
ATR0481G004 Amborella trichopoda HOM05D005619 ORTHO05D006696 6.3e-31 137.5 113 61.1
HPP92_000422 Vanilla planifolia HOM05D000755 ORTHO05D006696 6.3e-31 137.5 111 62.2
HPP92_000355 Vanilla planifolia HOM05D000755 ORTHO05D000642 2.4e-30 135.6 111 61.3
DCAR_026757 Daucus carota HOM05D005619 ORTHO05D006696 7.0e-30 134.0 112 57.1
HanXRQChr15g0468911 Helianthus annuus HOM05D005619 ORTHO05D006696 3.5e-29 131.7 112 56.2
DCAR_023625 Daucus carota HOM05D005619 ORTHO05D006696 5.9e-29 131.0 113 55.8
HanXRQChr08g0213181 Helianthus annuus HOM05D005619 ORTHO05D006696 5.9e-29 131.0 112 55.4
ECA233G2873 Erigeron canadensis HOM05D005619 ORTHO05D006696 1.7e-28 129.4 112 55.4
SGA_v2.0_scaffold170G38815 Striga asiatica HOM05D005619 ORTHO05D006696 1.7e-28 129.4 113 55.8
Oeu057772.1 Olea europaea HOM05D005619 ORTHO05D006696 3.8e-28 128.3 112 58.9
HanXRQChr09g0271791 Helianthus annuus HOM05D005619 ORTHO05D006696 1.1e-27 126.7 112 53.6
Lsat_1_v5_gn_8_41961 Lactuca sativa HOM05D005619 ORTHO05D006696 3.3e-27 125.2 112 55.4
Hma1.2p1_2256F.1_g318210 Hydrangea macrophylla HOM05D005619 ORTHO05D006696 4.3e-27 124.8 113 54.9
SMO356G0622 Selaginella moellendorffii HOM05D005619 ORTHO05D006696 4.3e-27 124.8 113 56.6
MSTRG.870 Avicennia marina HOM05D005619 ORTHO05D006696 9.5e-27 123.6 113 54.9
AagrBONN_evm.TU.Sc2ySwM_228.5247 Anthoceros agrestis HOM05D005619 ORTHO05D006696 4.7e-26 121.3 106 55.7
unitig_52.g17125 Utricularia gibba HOM05D005619 ORTHO05D006696 4.7e-26 121.3 113 55.8
ECA247G2146 Erigeron canadensis HOM05D005619 ORTHO05D006696 1.4e-25 119.8 112 51.8
Migut.E00386 Erythranthe guttata HOM05D005619 ORTHO05D006696 2.3e-25 119.0 113 52.2
SalBow8G4625 Salvia bowleyana HOM05D005619 ORTHO05D006696 5.2e-25 117.9 113 52.2
BolC4t22357H Brassica oleracea HOM05D004515 ORTHO05D006013 1.5e-24 116.3 71 76.1
PGSC0003DMG400030566 Solanum tuberosum HOM05D005619 ORTHO05D006696 3.4e-24 115.2 115 53.9
Peaxi162Scf00451g00930 Petunia axillaris HOM05D005619 ORTHO05D006696 7.5e-24 114.0 115 53.0
AagrBONN_evm.TU.Sc2ySwM_344.729 Anthoceros agrestis HOM05D005619 ORTHO05D006696 9.8e-24 113.6 109 53.2
Cc03_g10740 Coffea canephora HOM05D005619 ORTHO05D006696 9.8e-24 113.6 105 52.4
Solyc05g008620.4 Solanum lycopersicum HOM05D005619 ORTHO05D006696 9.8e-24 113.6 115 53.0
Sopen05g004460 Solanum pennellii HOM05D005619 ORTHO05D006696 9.8e-24 113.6 115 53.0
Pp3c25_12660 Physcomitrium patens HOM05D005619 ORTHO05D006696 2.9e-23 112.1 112 50.0
CAN.G1489.22 Capsicum annuum HOM05D005619 ORTHO05D006696 3.7e-23 111.7 115 53.0
TWI73G0774 Tripterygium wilfordii HOM05D005619 ORTHO05D006696 8.3e-23 110.5 107 53.3
FAN06G2505 Fragaria x ananassa HOM05D005619 ORTHO05D006696 1.4e-22 109.8 113 49.6
CBR_g38120 Chara braunii HOM05D005619 ORTHO05D006696 1.8e-22 109.4 106 45.3
Cc03_g13530 Coffea canephora HOM05D005619 ORTHO05D006696 3.2e-22 108.6 115 50.4
Peaxi162Scf00205g01136 Petunia axillaris HOM05D005619 ORTHO05D006696 9.2e-22 107.1 96 55.2
Mapoly0053s0030 Marchantia polymorpha HOM05D005619 ORTHO05D006696 1.6e-21 106.3 103 49.5
CSS0006460 Camellia sinensis var. sinensis HOM05D005619 ORTHO05D006696 5.9e-21 104.4 113 54.0
Mapoly0034s0059 Marchantia polymorpha HOM05D005619 ORTHO05D006696 1.7e-20 102.8 103 44.7
AagrBONN_evm.TU.Sc2ySwM_344.737 Anthoceros agrestis HOM05D005619 ORTHO05D006696 9.5e-19 97.1 81 59.3
Sabra10G0145900 Salix brachista HOM05D005619 ORTHO05D006696 8.9e-17 90.5 63 69.8
SalBow8G2997 Salvia bowleyana HOM05D005619 ORTHO05D006696 1.2e-16 90.1 115 44.3
BcaB08g35316 Brassica carinata HOM05D005619 ORTHO05D006696 3.4e-16 88.6 51 78.4
Nitab4.5_0000350g0020 Nicotiana tabacum HOM05D005619 ORTHO05D006696 9.8e-16 87.0 81 55.6
MELO3C029903.2 Cucumis melo HOM05D005619 ORTHO05D006696 1.2e-13 80.1 125 42.4
HanXRQChr01g0017101 Helianthus annuus HOM05D005619 ORTHO05D006696 1.2e-13 80.1 62 58.1
Actinidia33632 Actinidia chinensis HOM05D005619 ORTHO05D006696 6.0e-13 77.8 74 59.5
Cre06.g251750 Chlamydomonas reinhardtii HOM05D005619 ORTHO05D006696 3.9e-12 75.1 98 33.7
ATR0568G146 Amborella trichopoda HOM05D005619 ORTHO05D006696 9.5e-11 70.5 61 54.1
Nitab4.5_0003886g0110 Nicotiana tabacum HOM05D005619 ORTHO05D006696 1.1e-09 67.0 113 38.9
MCO08G248 Micromonas commoda HOM05D005619 ORTHO05D006696 4.0e-09 65.1 99 32.3
HanXRQChr12g0375531 Helianthus annuus HOM05D005619 ORTHO05D006696 1.4e-06 56.6 52 48.1
C04p07380 Brassica napus HOM05D005619 ORTHO05D006696 3.2e-06 55.5 31 83.9
PRCOL_00002083 Prasinoderma coloniale HOM05D005619 ORTHO05D006696 4.1e-06 55.1 103 32.0


User provided reference genes

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