Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR157230 Cardamine hirsuta HOM05D005223 ORTHO05D006449 0.0e+00 1983.4 1014 100.0
AL5G27880 Arabidopsis lyrata HOM05D005223 ORTHO05D006449 0.0e+00 1818.9 1015 92.0
Sp5g13560 Schrenkiella parvula HOM05D005223 ORTHO05D006449 0.0e+00 1805.0 1017 90.8
Carub.0005s1465 Capsella rubella HOM05D005223 ORTHO05D006449 0.0e+00 1801.9 1015 91.3
AT3G48470 Arabidopsis thaliana HOM05D005223 ORTHO05D006449 0.0e+00 1798.5 1016 91.1
C03p66340 Brassica napus HOM05D005223 ORTHO05D006449 0.0e+00 1752.3 1017 88.2
BcaC01g02344 Brassica carinata HOM05D005223 ORTHO05D006449 0.0e+00 1751.9 1017 88.3
BcaB02g10650 Brassica carinata HOM05D005223 ORTHO05D006449 0.0e+00 1746.1 1019 88.3
BraA06t25704Z Brassica rapa HOM05D005223 ORTHO05D006449 0.0e+00 1734.5 1023 87.5
BolC3t18905H Brassica oleracea HOM05D005223 ORTHO05D006449 0.0e+00 1731.8 1037 86.4
A06p27680 Brassica napus HOM05D005223 ORTHO05D006449 0.0e+00 1712.2 1023 86.8
Thhalv10010098m.g Eutrema salsugineum HOM05D005223 ORTHO05D006449 0.0e+00 1680.2 1016 86.0
THA.LOC104818196 Tarenaya hassleriana HOM05D005223 ORTHO05D006449 0.0e+00 1463.4 1021 74.0
Gorai.001G061400 Gossypium raimondii HOM05D005223 ORTHO05D006449 0.0e+00 1223.8 1018 62.8
Gohir.D07G057900 Gossypium hirsutum HOM05D005223 ORTHO05D006449 0.0e+00 1219.9 1020 62.5
Thecc.03G122800 Theobroma cacao HOM05D005223 ORTHO05D006449 0.0e+00 1217.6 1018 62.3
Gohir.A07G053500 Gossypium hirsutum HOM05D005223 ORTHO05D006449 0.0e+00 1208.0 1020 62.1
QL10p005060 Quercus lobata HOM05D005223 ORTHO05D006449 0.0e+00 1184.1 1026 60.2
Cfa018892 Carpinus fangiana HOM05D005223 ORTHO05D006449 0.0e+00 1182.2 1028 60.4
Atru.chr9.1012 Acer truncatum HOM05D005223 ORTHO05D006449 0.0e+00 1173.7 1016 60.5
Haze_07276 Corylus avellana HOM05D005223 ORTHO05D006449 0.0e+00 1166.8 1025 60.2
TWI14G1297 Tripterygium wilfordii HOM05D005223 ORTHO05D006449 0.0e+00 1155.2 1020 60.3
Manes.06G115300 Manihot esculenta HOM05D005223 ORTHO05D006449 0.0e+00 1133.2 1024 58.4
MD14G1163600 Malus domestica HOM05D005223 ORTHO05D006449 0.0e+00 1132.1 1023 58.1
Prupe.5G157000 Prunus persica HOM05D005223 ORTHO05D006449 0.0e+00 1129.4 1035 57.7
RcHm_v2.0_Chr7g0191161 Rosa chinensis HOM05D005223 ORTHO05D006449 0.0e+00 1129.0 1021 58.0
Duzib084G0239 Durio zibethinus HOM05D005223 ORTHO05D006449 0.0e+00 1127.1 1022 58.5
CANSAT80G2773 Cannabis sativa HOM05D005223 ORTHO05D006449 0.0e+00 1122.8 1028 57.5
Potri.015G090700 Populus trichocarpa HOM05D005223 ORTHO05D006449 0.0e+00 1119.8 1026 57.4
Ciclev10018616m.g Citrus clementina HOM05D005223 ORTHO05D006449 0.0e+00 1119.4 1026 57.7
GSVIVG01007540001 Vitis vinifera HOM05D005223 ORTHO05D006449 0.0e+00 1115.1 1056 56.2
Dinv38469 Davidia involucrata HOM05D005223 ORTHO05D006449 0.0e+00 1107.0 998 57.4
TAR629G2346 Trochodendron aralioides HOM05D005223 ORTHO05D006449 0.0e+00 1104.4 1022 56.3
ClCG03G003490 Citrullus lanatus HOM05D005223 ORTHO05D006449 0.0e+00 1098.6 1019 57.0
FAN04G2946 Fragaria x ananassa HOM05D005223 ORTHO05D006449 0.0e+00 1098.2 1022 56.9
Hma1.2p1_0123F.1_g058130 Hydrangea macrophylla HOM05D005223 ORTHO05D006449 0.0e+00 1097.8 1030 56.1
FAN18G3380 Fragaria x ananassa HOM05D005223 ORTHO05D006449 0.0e+00 1096.3 1025 56.9
MELO3C002332.2 Cucumis melo HOM05D005223 ORTHO05D006449 0.0e+00 1095.5 1018 56.4
CsaV3_1G009290 Cucumis sativus L. HOM05D005223 ORTHO05D006449 0.0e+00 1095.5 1019 56.3
FAN13G2650 Fragaria x ananassa HOM05D005223 ORTHO05D006449 0.0e+00 1091.3 1030 56.7
FvH4_5g07490 Fragaria vesca HOM05D005223 ORTHO05D006449 0.0e+00 1090.9 1025 56.7
Medtr3g075100 Medicago truncatula HOM05D005223 ORTHO05D006449 0.0e+00 1089.7 1019 56.1
Lj1g0000662 Lotus japonicus HOM05D005223 ORTHO05D006449 0.0e+00 1087.4 1022 56.9
Sed0011232 Sechium edule HOM05D005223 ORTHO05D006449 0.0e+00 1083.9 1014 56.8
Sabra15G0112800 Salix brachista HOM05D005223 ORTHO05D000001 0.0e+00 1079.3 985 57.2
CSS0037650 Camellia sinensis var. sinensis HOM05D005223 ORTHO05D006449 0.0e+00 1075.8 1024 55.6
Ca_16089_v3 Cicer arietinum L. HOM05D005223 ORTHO05D006449 0.0e+00 1075.5 1019 56.4
Glyma.04G193000 Glycine max HOM05D005223 ORTHO05D006449 0.0e+00 1075.5 1021 57.0
Phvul.009G168800 Phaseolus vulgaris HOM05D005223 ORTHO05D006449 6.9e-312 1073.9 1015 57.1
Nn4g22461 Nelumbo nucifera HOM05D005223 ORTHO05D006449 8.4e-308 1060.4 1023 55.1
Eucgr.L01337 Eucalyptus grandis HOM05D005223 ORTHO05D006449 1.4e-307 1059.7 1022 55.1
arahy.Tifrunner.gnm1.ann1.D4E4RT Arachis hypogaea HOM05D005223 ORTHO05D006449 5.4e-307 1057.7 1055 54.9
Rhsim08G0185000 Rhododendron simsii HOM05D005223 ORTHO05D006449 2.1e-306 1055.8 1022 55.4
VMungo1309G0017 Vigna mungo HOM05D005223 ORTHO05D006449 1.0e-305 1053.5 1024 56.2
Lalb_Chr08g0236961 Lupinus albus HOM05D005223 ORTHO05D006449 8.7e-305 1050.4 1019 55.6
Lj9C475T6 Lonicera japonica HOM05D005223 ORTHO05D006449 1.6e-303 1046.2 1039 54.4
Aqoxy5G03583 Aquilegia oxysepala HOM05D005223 ORTHO05D006449 1.5e-301 1039.6 1015 54.1
TPR.G13978 Trifolium pratense HOM05D005223 ORTHO05D006449 7.6e-301 1037.3 1008 55.7
HanXRQChr05g0154741 Helianthus annuus HOM05D005223 ORTHO05D006449 8.7e-297 1023.8 1006 54.3
vmacro19239 Vaccinium macrocarpon HOM05D005223 ORTHO05D006449 1.9e-296 1022.7 1074 52.0
PGR083G1937 Punica granatum HOM05D005223 ORTHO05D006449 2.1e-295 1019.2 1050 53.0
PSO063G1058 Papaver somniferum HOM05D005223 ORTHO05D006449 4.0e-294 1015.0 1029 51.9
CiPaw.12G035700 Carya illinoinensis HOM05D005223 ORTHO05D006449 2.0e-293 1012.7 906 58.8
DCAR_021603 Daucus carota HOM05D005223 ORTHO05D006449 2.6e-293 1012.3 1021 53.7
Cc04_g10370 Coffea canephora HOM05D005223 ORTHO05D006449 3.4e-293 1011.9 1016 53.7
Migut.I00475 Erythranthe guttata HOM05D005223 ORTHO05D006449 7.6e-293 1010.7 1023 52.9
ECA246G2102 Erigeron canadensis HOM05D005223 ORTHO05D006449 2.4e-291 1005.7 1008 53.2
MSTRG.11293 Avicennia marina HOM05D005223 ORTHO05D006449 5.6e-288 994.6 1020 52.5
Solyc10g006780.4 Solanum lycopersicum HOM05D005223 ORTHO05D006449 2.4e-286 989.2 1016 52.4
PGSC0003DMG400025026 Solanum tuberosum HOM05D005223 ORTHO05D006449 2.4e-286 989.2 1019 52.0
SGA_v2.0_scaffold457G51932 Striga asiatica HOM05D005223 ORTHO05D006449 1.2e-285 986.9 1031 51.9
Sopen10g002700 Solanum pennellii HOM05D005223 ORTHO05D006449 1.3e-284 983.4 1016 52.0
Lsat_1_v5_gn_5_13240 Lactuca sativa HOM05D005223 ORTHO05D006449 8.4e-284 980.7 984 52.6
COL.COLO4_09267 Corchorus olitorius HOM05D005223 ORTHO05D006449 7.9e-282 974.2 841 61.1
Sc10g0010350 Simmondsia chinensis HOM05D005223 ORTHO05D006449 1.6e-279 966.5 952 54.0
Nitab4.5_0000955g0070 Nicotiana tabacum HOM05D005223 ORTHO05D006449 1.1e-278 963.8 1023 52.0
Aa31LG4G17060 Aethionema arabicum HOM05D005223 ORTHO05D006449 1.5e-277 959.9 616 80.7
CAN.G1110.40 Capsicum annuum HOM05D005223 ORTHO05D006449 8.5e-276 954.1 1019 51.1
Nitab4.5_0002775g0020 Nicotiana tabacum HOM05D005223 ORTHO05D006449 2.5e-275 952.6 1021 51.0
SalBow5G2547 Salvia bowleyana HOM05D005223 ORTHO05D006449 1.0e-273 947.2 1056 49.6
Peaxi162Scf00536g00422 Petunia axillaris HOM05D005223 ORTHO05D006449 2.5e-272 942.6 1010 51.5
AUR62001278 Chenopodium quinoa HOM05D005223 ORTHO05D006449 7.4e-272 941.0 1038 51.2
Psat5g141880 Pisum sativum HOM05D005223 ORTHO05D006449 2.4e-270 936.0 902 55.9
EL10Ac7g18074 Beta vulgaris HOM05D005223 ORTHO05D006449 7.7e-269 931.0 1016 51.0
CDE02G2587 Ceratophyllum demersum HOM05D005223 ORTHO05D006449 1.0e-268 930.6 1032 49.4
ATR0824G104 Amborella trichopoda HOM05D005223 ORTHO05D006449 1.9e-267 926.4 1012 49.6
AUR62025728 Chenopodium quinoa HOM05D005223 ORTHO05D006449 1.6e-266 923.3 1037 50.5
Os02g0598800 Oryza sativa ssp. japonica HOM05D005223 ORTHO05D006449 8.5e-260 901.0 1023 48.4
Hund18539 Selenicereus undatus HOM05D005223 ORTHO05D006449 6.3e-255 884.8 962 50.3
Zm00001eb246300 Zea mays HOM05D005223 ORTHO05D006449 9.1e-254 880.9 1033 47.6
arahy.Tifrunner.gnm1.ann1.9N92ER Arachis hypogaea HOM05D005223 ORTHO05D006449 6.1e-242 841.6 773 59.0
SGA_v2.0_scaffold50G18602 Striga asiatica HOM05D005223 ORTHO05D006449 1.7e-239 833.6 1030 48.1
Glyma.06G172900 Glycine max HOM05D005223 ORTHO05D006449 3.0e-233 812.8 724 59.8
Eucgr.B00148 Eucalyptus grandis HOM05D005223 ORTHO05D006449 3.1e-230 802.7 1026 45.7
Os02g0599100 Oryza sativa ssp. japonica HOM05D005223 ORTHO05D006449 2.4e-182 643.7 669 53.7
Os02g0598400 Oryza sativa ssp. japonica HOM05D005223 ORTHO05D006449 7.1e-182 642.1 669 53.5
Aa31LG4G17050 Aethionema arabicum HOM05D005223 ORTHO05D006449 1.6e-173 614.4 439 73.3
CSS0005553 Camellia sinensis var. sinensis HOM05D005223 ORTHO05D006449 1.0e-167 595.1 645 49.9
Actinidia19387 Actinidia chinensis HOM05D005223 ORTHO05D006449 6.5e-159 565.8 588 49.8
Pp3c24_17160 Physcomitrium patens HOM05D005223 ORTHO05D006449 1.2e-157 561.6 1058 34.8
Cpa.g.sc52.35 Carica papaya HOM05D005223 ORTHO05D006449 3.4e-152 543.5 576 54.9
Mapoly0075s0016 Marchantia polymorpha HOM05D005223 ORTHO05D006449 3.6e-149 533.5 1074 34.2
SHI10647 Sapria himalayana HOM05D005223 ORTHO05D006449 5.0e-135 486.5 531 53.1
SMO367G0489 Selaginella moellendorffii HOM05D005223 ORTHO05D006449 5.7e-131 473.0 959 34.6
Oeu007006.1 Olea europaea HOM05D005223 ORTHO05D006449 5.9e-120 436.4 358 63.7
CBR_g45764 Chara braunii HOM05D005223 ORTHO05D006449 1.2e-96 359.0 1123 27.9
CBR_g52378 Chara braunii HOM05D005223 ORTHO05D006449 1.4e-92 345.5 1136 27.0
Oeu057221.1 Olea europaea HOM05D005223 ORTHO05D006449 4.0e-92 344.0 393 46.6
Cpa.g.sc52.34 Carica papaya HOM05D005223 ORTHO05D006449 3.9e-79 300.8 356 46.1
FvH4_5g07461 Fragaria vesca HOM05D005223 ORTHO05D006449 1.5e-78 298.9 312 51.9
MBI11_g36316_MAGBIO Magnolia biondii HOM05D005223 ORTHO05D006449 9.3e-57 226.5 222 53.2
FvH4_3g25520 Fragaria vesca HOM05D005223 ORTHO05D006449 9.6e-54 216.5 253 46.2
FvH4_5g07361 Fragaria vesca HOM05D005223 ORTHO05D006449 6.9e-44 183.7 552 29.7
FvH4_5g07460 Fragaria vesca HOM05D005223 ORTHO05D006449 3.8e-42 177.9 230 45.7
Nn8g40428 Nelumbo nucifera HOM05D005223 ORTHO05D006449 2.7e-40 171.8 149 59.1
MD06G1153900 Malus domestica HOM05D005223 ORTHO05D006449 1.7e-37 162.5 198 47.5
Lsat_1_v5_gn_0_22080 Lactuca sativa HOM05D005223 ORTHO05D006449 2.0e-30 139.0 151 46.4
SEGI_02888 Sequoiadendron giganteum HOM05D005223 ORTHO05D006449 4.5e-27 127.9 220 33.6
Cre03.g186550 Chlamydomonas reinhardtii HOM05D005223 ORTHO05D006449 1.9e-25 122.5 425 28.0
QL10p005098 Quercus lobata HOM05D005223 ORTHO05D006449 1.4e-23 116.3 169 39.1
SalBow5G3736 Salvia bowleyana HOM05D005223 ORTHO05D006449 4.1e-20 104.8 78 59.0
SEGI_05777 Sequoiadendron giganteum HOM05D005223 ORTHO05D006449 5.0e-18 97.8 144 36.8
Actinidia25613 Actinidia chinensis HOM05D005223 ORTHO05D006449 1.6e-16 92.8 127 38.6
Nn7g38107 Nelumbo nucifera HOM05D005223 ORTHO05D006449 2.1e-16 92.4 105 47.6
Lsat_1_v5_gn_1_114041 Lactuca sativa HOM05D005223 ORTHO05D006449 2.7e-16 92.0 77 53.2
ECA246G0437 Erigeron canadensis HOM05D005223 ORTHO05D006449 1.0e-15 90.1 218 34.4
SalBow1G2179 Salvia bowleyana HOM05D005223 ORTHO05D006449 5.2e-15 87.8 93 48.4
Nn3g20975 Nelumbo nucifera HOM05D005223 ORTHO05D006449 1.5e-14 86.3 103 47.6
SalBow1G1130 Salvia bowleyana HOM05D005223 ORTHO05D006449 2.0e-14 85.9 93 47.3
PRCOL_00001784 Prasinoderma coloniale HOM05D005223 ORTHO05D006449 1.3e-13 83.2 399 29.1
AagrBONN_evm.TU.Sc2ySwM_228.970 Anthoceros agrestis HOM05D005223 ORTHO05D006449 1.1e-12 80.1 265 31.3
RcHm_v2.0_Chr1g0339741 Rosa chinensis HOM05D005223 ORTHO05D006449 1.1e-12 80.1 65 50.8
RcHm_v2.0_Chr4g0412201 Rosa chinensis HOM05D005223 ORTHO05D006449 1.7e-10 72.8 65 47.7
DCAR_016747 Daucus carota HOM05D000329 ORTHO05D006449 8.5e-10 70.5 50 62.0
Nitab4.5_0004801g0040 Nicotiana tabacum HOM05D000112 ORTHO05D001327 1.6e-08 66.2 43 67.4
HPP92_024695 Vanilla planifolia HOM05D005223 ORTHO05D006449 1.4e-07 63.2 145 36.6
MCO03G522 Micromonas commoda HOM05D005223 ORTHO05D006449 3.0e-07 62.0 451 24.6
RcHm_v2.0_Chr0c39g0503251 Rosa chinensis HOM05D005223 ORTHO05D006449 2.0e-06 59.3 58 43.1
RcHm_v2.0_Chr1g0353191 Rosa chinensis HOM05D005223 ORTHO05D006449 2.0e-06 59.3 58 43.1
Actinidia19388 Actinidia chinensis HOM05D005223 ORTHO05D006449 5.7e-06 57.8 34 73.5


User provided reference genes

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