Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR156970 Cardamine hirsuta HOM05D004617 ORTHO05D005531 2.7e-167 592.0 319 100.0
Carub.0005s1437 Capsella rubella HOM05D004617 ORTHO05D005531 3.3e-141 505.4 320 87.2
AL5G27600 Arabidopsis lyrata HOM05D004617 ORTHO05D005531 5.2e-139 498.0 319 85.3
AT3G48210 Arabidopsis thaliana HOM05D004617 ORTHO05D005531 1.6e-135 486.5 319 84.0
Sp5g13810 Schrenkiella parvula HOM05D004617 ORTHO05D005531 6.0e-135 484.6 319 83.1
Thhalv10010559m.g Eutrema salsugineum HOM05D004617 ORTHO05D005531 4.9e-129 464.9 320 79.7
BcaB02g10666 Brassica carinata HOM05D004617 ORTHO05D005531 3.9e-126 455.3 319 78.7
BcaC01g02324 Brassica carinata HOM05D004617 ORTHO05D005531 2.8e-124 449.1 319 76.8
BolC3t18931H Brassica oleracea HOM05D004617 ORTHO05D005531 6.2e-124 448.0 315 77.5
C03p66610 Brassica napus HOM05D004617 ORTHO05D005531 1.1e-123 447.2 315 77.5
Thhalv10010553m.g Eutrema salsugineum HOM05D004617 ORTHO05D005531 1.7e-121 439.9 317 76.7
A06p27500 Brassica napus HOM05D004617 ORTHO05D005531 2.7e-119 432.6 316 75.0
BraA06t25690Z Brassica rapa HOM05D004617 ORTHO05D005531 1.0e-118 430.6 316 75.0
Aa31LG4G16830 Aethionema arabicum HOM05D004617 ORTHO05D005531 2.4e-115 419.5 318 74.2
THA.LOC104818211 Tarenaya hassleriana HOM05D004617 ORTHO05D005531 1.9e-104 383.3 323 68.1
THA.LOC104798968 Tarenaya hassleriana HOM05D004617 ORTHO05D005531 3.2e-96 355.9 291 68.7
Thecc.03G024100 Theobroma cacao HOM05D004617 ORTHO05D005531 6.3e-68 261.9 346 48.0
Ciclev10020950m.g Citrus clementina HOM05D004617 ORTHO05D005531 1.2e-63 247.7 345 43.8
Cpa.g.sc153.19 Carica papaya HOM05D004617 ORTHO05D005531 1.0e-62 244.6 303 47.2
CiPaw.12G028900 Carya illinoinensis HOM05D004617 ORTHO05D005531 1.0e-62 244.6 311 47.3
Gohir.A12G272900 Gossypium hirsutum HOM05D004617 ORTHO05D005531 3.0e-62 243.0 288 48.3
COL.COLO4_30121 Corchorus olitorius HOM05D004617 ORTHO05D005531 4.0e-62 242.7 279 48.4
TAR629G3522 Trochodendron aralioides HOM05D004617 ORTHO05D005531 1.5e-61 240.7 316 45.3
Dinv38556 Davidia involucrata HOM05D004617 ORTHO05D005531 2.0e-61 240.4 313 44.7
GSVIVG01007687001 Vitis vinifera HOM05D004617 ORTHO05D005531 2.6e-61 240.0 315 46.0
Potri.015G080900 Populus trichocarpa HOM05D004617 ORTHO05D005531 3.3e-61 239.6 313 45.4
Atru.chr9.2539 Acer truncatum HOM05D004617 ORTHO05D005531 4.4e-61 239.2 342 45.0
Gorai.008G294000 Gossypium raimondii HOM05D004617 ORTHO05D005531 1.3e-60 237.7 282 48.2
Nitab4.5_0011992g0040 Nicotiana tabacum HOM05D004617 ORTHO05D005531 1.7e-60 237.3 310 44.5
Duzib205G1820 Durio zibethinus HOM05D004617 ORTHO05D005531 2.2e-60 236.9 296 47.3
Nitab4.5_0001284g0070 Nicotiana tabacum HOM05D004617 ORTHO05D005531 3.7e-60 236.1 310 44.8
A06p19470 Brassica napus HOM05D004617 ORTHO05D005531 4.8e-60 235.7 263 55.5
Haze_07552 Corylus avellana HOM05D004617 ORTHO05D005531 1.1e-59 234.6 338 45.3
Dinv20620 Davidia involucrata HOM05D004617 ORTHO05D005531 1.8e-59 233.8 309 45.6
Gohir.D12G273600 Gossypium hirsutum HOM05D004617 ORTHO05D005531 1.8e-59 233.8 335 43.3
TWI39G0523 Tripterygium wilfordii HOM05D004617 ORTHO05D005531 7.0e-59 231.9 334 43.7
CSS0042906 Camellia sinensis var. sinensis HOM05D004617 ORTHO05D005531 1.6e-58 230.7 303 44.9
QL10p008526 Quercus lobata HOM05D004617 ORTHO05D005531 2.7e-58 229.9 295 47.5
PGSC0003DMG400018106 Solanum tuberosum HOM05D004617 ORTHO05D005531 2.7e-58 229.9 307 44.0
QL10p008663 Quercus lobata HOM05D004617 ORTHO05D005531 5.9e-58 228.8 294 47.6
PGR044G1277 Punica granatum HOM05D004617 ORTHO05D005531 1.0e-57 228.0 317 45.1
Sopen03g031610 Solanum pennellii HOM05D004617 ORTHO05D005531 1.0e-57 228.0 313 43.8
CSS0013084 Camellia sinensis var. sinensis HOM05D004617 ORTHO05D005531 1.7e-57 227.3 303 44.6
CAN.G338.4 Capsicum annuum HOM05D004617 ORTHO05D005531 2.9e-57 226.5 306 43.8
MD06G1170100 Malus domestica HOM05D004617 ORTHO05D005531 3.8e-57 226.1 316 47.2
BraA06t25026Z Brassica rapa HOM05D004617 ORTHO05D005531 1.1e-56 224.6 265 54.0
Lj4g0013782 Lotus japonicus HOM05D004617 ORTHO05D005531 1.5e-56 224.2 311 44.7
Nn4g22667 Nelumbo nucifera HOM05D004617 ORTHO05D005531 1.5e-56 224.2 288 46.5
Solyc03g112550.3 Solanum lycopersicum HOM05D004617 ORTHO05D005531 1.5e-56 224.2 313 42.8
Phvul.009G175700 Phaseolus vulgaris HOM05D004617 ORTHO05D005531 1.9e-56 223.8 300 45.3
Lalb_Chr23g0273321 Lupinus albus HOM05D004617 ORTHO05D005531 2.5e-56 223.4 316 44.3
Migut.O00131 Erythranthe guttata HOM05D004617 ORTHO05D005531 7.2e-56 221.9 304 45.1
Sc04g0001670 Simmondsia chinensis HOM05D004617 ORTHO05D005531 7.2e-56 221.9 301 43.9
Manes.06G108000 Manihot esculenta HOM05D004617 ORTHO05D005531 1.2e-55 221.1 307 46.9
Gohir.A09G172500 Gossypium hirsutum HOM05D004617 ORTHO05D005531 1.6e-55 220.7 302 42.1
Potri.T124408 Populus trichocarpa HOM05D004617 ORTHO05D005531 2.1e-55 220.3 298 45.3
Rhsim12G0166500 Rhododendron simsii HOM05D004617 ORTHO05D005531 2.7e-55 219.9 347 39.2
CiPaw.11G022700 Carya illinoinensis HOM05D004617 ORTHO05D005531 3.6e-55 219.5 306 44.8
TWI23G0363 Tripterygium wilfordii HOM05D004617 ORTHO05D005531 3.6e-55 219.5 273 48.0
Potri.012G088000 Populus trichocarpa HOM05D004617 ORTHO05D005531 4.7e-55 219.2 314 44.6
Cc04_g12560 Coffea canephora HOM05D004617 ORTHO05D005531 2.3e-54 216.9 303 42.9
MD14G1175700 Malus domestica HOM05D004617 ORTHO05D005531 2.3e-54 216.9 316 45.6
PSO478G3702 Papaver somniferum HOM05D004617 ORTHO05D005531 2.3e-54 216.9 307 42.3
Sed0022669 Sechium edule HOM05D004617 ORTHO05D005531 4.0e-54 216.1 312 43.6
Oeu001681.1 Olea europaea HOM05D004617 ORTHO05D005531 8.8e-54 214.9 305 42.6
vmacro16629 Vaccinium macrocarpon HOM05D004617 ORTHO05D005531 1.5e-53 214.2 338 39.3
CANSAT80G0933 Cannabis sativa HOM05D004617 ORTHO05D005531 5.7e-53 212.2 309 44.7
MSTRG.23154 Avicennia marina HOM05D004617 ORTHO05D005531 7.5e-53 211.8 309 43.0
DCAR_021575 Daucus carota HOM05D004617 ORTHO05D005531 7.5e-53 211.8 316 44.3
Hund09456 Selenicereus undatus HOM05D004617 ORTHO05D005531 9.8e-53 211.5 309 41.7
Gorai.006G189800 Gossypium raimondii HOM05D004617 ORTHO05D005531 1.7e-52 210.7 302 41.4
Glyma.05G040000 Glycine max HOM05D004617 ORTHO05D005531 2.8e-52 209.9 302 44.4
PSO017G2275 Papaver somniferum HOM05D004617 ORTHO05D005531 2.8e-52 209.9 307 42.3
Phvul.003G203200 Phaseolus vulgaris HOM05D004617 ORTHO05D005531 3.7e-52 209.5 295 43.4
CsaV3_1G001290 Cucumis sativus L. HOM05D004617 ORTHO05D005531 4.8e-52 209.1 314 42.4
MELO3C026277.2 Cucumis melo HOM05D004617 ORTHO05D005531 3.1e-51 206.5 312 42.9
RcHm_v2.0_Chr7g0193001 Rosa chinensis HOM05D004617 ORTHO05D005531 3.1e-51 206.5 315 42.5
arahy.Tifrunner.gnm1.ann1.B97T9I Arachis hypogaea HOM05D004617 ORTHO05D005531 5.4e-51 205.7 309 41.4
VMungo1215G2409 Vigna mungo HOM05D004617 ORTHO05D005531 5.4e-51 205.7 309 42.7
VMungo1309G0654 Vigna mungo HOM05D004617 ORTHO05D005531 5.4e-51 205.7 319 41.1
arahy.Tifrunner.gnm1.ann1.P4R84V Arachis hypogaea HOM05D004617 ORTHO05D005531 7.0e-51 205.3 305 41.6
MSTRG.11480 Avicennia marina HOM05D004617 ORTHO05D005531 2.0e-50 203.8 306 43.5
Lsat_1_v5_gn_5_15901 Lactuca sativa HOM05D004617 ORTHO05D005531 2.7e-50 203.4 304 41.1
TPR.G37539 Trifolium pratense HOM05D004617 ORTHO05D005531 5.9e-50 202.2 297 44.1
Eucgr.K02817 Eucalyptus grandis HOM05D004617 ORTHO05D005531 1.0e-49 201.4 336 40.5
FAN05G0977 Fragaria x ananassa HOM05D004617 ORTHO05D005531 1.3e-49 201.1 318 42.8
Sopen06g027890 Solanum pennellii HOM05D004617 ORTHO05D005531 1.3e-49 201.1 312 41.7
ClCG06G017200 Citrullus lanatus HOM05D004617 ORTHO05D005531 2.9e-49 199.9 311 41.2
Peaxi162Scf00089g01634 Petunia axillaris HOM05D004617 ORTHO05D005531 2.9e-49 199.9 324 39.5
SGA_v2.0_scaffold90G27877 Striga asiatica HOM05D004617 ORTHO05D005531 2.9e-49 199.9 303 41.9
Aqoxy3G01097 Aquilegia oxysepala HOM05D004617 ORTHO05D005531 1.5e-48 197.6 304 40.5
FvH4_5g05820 Fragaria vesca HOM05D004617 ORTHO05D005531 1.5e-48 197.6 262 44.3
Sc12g0005180 Simmondsia chinensis HOM05D004617 ORTHO05D005531 1.9e-48 197.2 294 39.8
PGSC0003DMG400027080 Solanum tuberosum HOM05D004617 ORTHO05D005531 2.5e-48 196.8 309 41.1
Solyc06g071600.3 Solanum lycopersicum HOM05D004617 ORTHO05D005531 4.2e-48 196.1 312 40.7
Hma1.2p1_0046F.1_g026830 Hydrangea macrophylla HOM05D004617 ORTHO05D005531 5.5e-48 195.7 327 37.9
FAN13G0632 Fragaria x ananassa HOM05D004617 ORTHO05D005531 7.2e-48 195.3 257 44.4
AUR62029851 Chenopodium quinoa HOM05D004617 ORTHO05D005531 1.6e-47 194.1 308 40.6
Sabra15G0104900 Salix brachista HOM05D004617 ORTHO05D005531 2.1e-47 193.7 308 40.3
Ca_21946_v3 Cicer arietinum L. HOM05D004617 ORTHO05D005531 3.6e-47 193.0 314 41.1
ECA246G2887 Erigeron canadensis HOM05D004617 ORTHO05D005531 3.6e-47 193.0 310 39.4
EL10Ac5g10692 Beta vulgaris HOM05D004617 ORTHO05D005531 8.0e-47 191.8 227 44.5
CAN.G993.37 Capsicum annuum HOM05D004617 ORTHO05D005531 8.0e-47 191.8 316 40.8
FAN08G0972 Fragaria x ananassa HOM05D004617 ORTHO05D005531 1.0e-46 191.4 258 44.6
HanXRQChr05g0154591 Helianthus annuus HOM05D004617 ORTHO05D005531 1.0e-46 191.4 308 39.0
FvH4_6g24101 Fragaria vesca HOM05D004617 ORTHO05D005531 4.0e-46 189.5 316 39.6
FAN18G1615 Fragaria x ananassa HOM05D004617 ORTHO05D005531 1.2e-45 188.0 229 45.4
Psat4g059160 Pisum sativum HOM05D004617 ORTHO05D005531 1.5e-45 187.6 296 41.9
Lj9A445T80 Lonicera japonica HOM05D004617 ORTHO05D005531 3.4e-45 186.4 366 35.8
AUR62008173 Chenopodium quinoa HOM05D004617 ORTHO05D005531 9.8e-45 184.9 267 41.2
Sabra12G0062800 Salix brachista HOM05D004617 ORTHO05D005531 1.3e-44 184.5 355 38.3
Ca_29672_v3 Cicer arietinum L. HOM05D004617 ORTHO05D005531 3.1e-43 179.9 295 41.0
AUR62028750 Chenopodium quinoa HOM05D004617 ORTHO05D005531 9.2e-43 178.3 266 39.8
Medtr4g105330 Medicago truncatula HOM05D004617 ORTHO05D005531 2.0e-42 177.2 297 39.7
Actinidia19118 Actinidia chinensis HOM05D004617 ORTHO05D005531 5.0e-41 172.6 234 42.7
Gohir.D09G168200 Gossypium hirsutum HOM05D004617 ORTHO05D005531 1.1e-40 171.4 302 38.1
Prupe.5G169600 Prunus persica HOM05D004617 ORTHO05D005531 1.9e-40 170.6 323 39.0
C08p23230 Brassica napus HOM05D004617 ORTHO05D005531 2.1e-39 167.2 201 52.7
Lj5A127T55 Lonicera japonica HOM05D004617 ORTHO05D005531 2.1e-39 167.2 263 42.2
BcaC07g39309 Brassica carinata HOM05D004617 ORTHO05D005531 3.6e-39 166.4 188 54.3
Nitab4.5_0003918g0030 Nicotiana tabacum HOM05D004617 ORTHO05D005531 3.0e-38 163.3 305 38.0
HPP92_011588 Vanilla planifolia HOM05D004617 ORTHO05D005531 1.2e-37 161.4 311 37.3
MBI16_g23858_MAGBIO Magnolia biondii HOM05D004617 ORTHO05D005531 3.7e-36 156.4 311 36.7
TAR371G0263 Trochodendron aralioides HOM05D004617 ORTHO05D005531 1.4e-35 154.5 190 44.2
SalBow5G2990 Salvia bowleyana HOM05D004617 ORTHO05D005531 4.1e-35 152.9 236 41.5
SalBow5G0770 Salvia bowleyana HOM05D004617 ORTHO05D005531 5.4e-35 152.5 236 41.5
ATR1152G034 Amborella trichopoda HOM05D004617 ORTHO05D005531 6.6e-33 145.6 311 34.7
unitig_0.g2533 Utricularia gibba HOM05D004617 ORTHO05D005531 1.9e-32 144.1 261 36.8
DCAR_004467 Daucus carota HOM05D004617 ORTHO05D005531 1.2e-31 141.4 223 38.6
CDE05G2613 Ceratophyllum demersum HOM05D004617 ORTHO05D005531 2.1e-31 140.6 271 34.7
Cpa.g.sc153.20 Carica papaya HOM05D004617 ORTHO05D005531 4.7e-31 139.4 195 41.5
FAN02G3554 Fragaria x ananassa HOM05D004617 ORTHO05D005531 3.4e-29 133.3 137 48.2
Psat4g095560 Pisum sativum HOM05D004617 ORTHO05D005531 5.8e-29 132.5 262 35.9
SEGI_25965 Sequoiadendron giganteum HOM05D004617 ORTHO05D005531 2.2e-28 130.6 221 37.6
CDE02G4133 Ceratophyllum demersum HOM05D004617 ORTHO05D005531 4.6e-26 122.9 216 36.1
Glyma.04G186200 Glycine max HOM05D004617 ORTHO05D005531 1.1e-24 118.2 147 44.9
Os05g0110700 Oryza sativa ssp. japonica HOM05D004617 ORTHO05D005531 7.3e-24 115.5 281 33.5
Zm00001eb139780 Zea mays HOM05D004617 ORTHO05D005531 1.6e-23 114.4 251 29.9
Os01g0973200 Oryza sativa ssp. japonica HOM05D004617 ORTHO05D005531 2.1e-23 114.0 308 31.2
Zm00001eb362200 Zea mays HOM05D004617 ORTHO05D005531 1.4e-22 111.3 247 30.0
Aqoxy5G01948 Aquilegia oxysepala HOM05D004617 ORTHO05D005531 7.8e-18 95.5 138 40.6
Glyma.06G179933 Glycine max HOM05D004617 ORTHO05D005531 1.0e-17 95.1 136 40.4
Zm00001eb355840 Zea mays HOM05D004617 ORTHO05D005531 6.6e-17 92.4 182 33.5
arahy.Tifrunner.gnm1.ann1.H09BLY Arachis hypogaea HOM05D004617 ORTHO05D005531 3.1e-14 83.6 149 38.3
Atru.chr9.2524 Acer truncatum HOM05D004617 ORTHO05D005531 3.4e-13 80.1 93 50.5
Mapoly0029s0121 Marchantia polymorpha HOM05D004617 ORTHO05D005531 2.7e-10 70.5 200 27.0
Pp3c8_1270 Physcomitrium patens HOM05D004617 ORTHO05D005531 1.3e-09 68.2 87 36.8
Pp3c3_37370 Physcomitrium patens HOM05D004617 ORTHO05D005531 5.6e-08 62.8 231 26.0
vmacro20892 Vaccinium macrocarpon HOM05D000448 ORTHO05D000291 2.1e-07 60.8 79 39.2
SMO200G0114 Selaginella moellendorffii HOM05D004617 ORTHO05D005531 8.1e-07 58.9 194 25.3
Glyma.17G086900 Glycine max HOM05D004617 ORTHO05D005531 4.0e-06 56.6 81 40.7
arahy.Tifrunner.gnm1.ann1.8UC028 Arachis hypogaea HOM05D004617 ORTHO05D005531 8.9e-06 55.5 101 35.6


User provided reference genes

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