Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR156940 Cardamine hirsuta HOM05D000922 ORTHO05D007418 0.0e+00 2007.6 1007 100.0
Carub.0005s1432 Capsella rubella HOM05D000922 ORTHO05D007418 0.0e+00 1651.0 1024 83.4
AL5G27540 Arabidopsis lyrata HOM05D000922 ORTHO05D007418 0.0e+00 1608.6 1028 81.5
Sp5g13830 Schrenkiella parvula HOM05D000922 ORTHO05D007418 0.0e+00 1573.5 1033 80.3
Thhalv10010097m.g Eutrema salsugineum HOM05D000922 ORTHO05D007418 0.0e+00 1545.0 1029 79.4
AT3G48195 Arabidopsis thaliana HOM05D000922 ORTHO05D007418 0.0e+00 1491.9 1011 77.9
BcaB05g22925 Brassica carinata HOM05D000922 ORTHO05D007418 0.0e+00 1444.9 1003 75.8
BolC1t03155H Brassica oleracea HOM05D000922 ORTHO05D007418 0.0e+00 1390.6 1016 73.1
BcaC09g49852 Brassica carinata HOM05D000922 ORTHO05D007418 0.0e+00 1389.0 1015 73.3
Aa31LG4G16800 Aethionema arabicum HOM05D000922 ORTHO05D007418 0.0e+00 1351.3 1021 70.2
BraA01t02462Z Brassica rapa HOM05D000922 ORTHO05D007418 0.0e+00 1335.5 1011 71.6
A01p25510 Brassica napus HOM05D000922 ORTHO05D007418 0.0e+00 1283.9 1009 69.6
THA.LOC104798972 Tarenaya hassleriana HOM05D000922 ORTHO05D007418 0.0e+00 1080.9 1007 60.8
Manes.14G064400 Manihot esculenta HOM05D000922 ORTHO05D007418 3.3e-240 835.9 1086 47.1
Thecc.03G014400 Theobroma cacao HOM05D000922 ORTHO05D007418 4.8e-231 805.4 1053 46.4
Potri.012G082500 Populus trichocarpa HOM05D000922 ORTHO05D007418 3.5e-229 799.3 1073 45.9
CiPaw.11G024700 Carya illinoinensis HOM05D000922 ORTHO05D007418 1.6e-226 790.4 1158 43.5
FAN08G1289 Fragaria x ananassa HOM05D000922 ORTHO05D007418 3.6e-226 789.3 1139 44.6
GSVIVG01007724001 Vitis vinifera HOM05D000922 ORTHO05D007418 3.6e-226 789.3 1035 45.6
Potri.015G078300 Populus trichocarpa HOM05D000922 ORTHO05D007418 1.0e-225 787.7 1099 45.5
FvH4_5g05470 Fragaria vesca HOM05D000922 ORTHO05D007418 1.8e-225 786.9 1139 44.1
Atru.chr9.2494 Acer truncatum HOM05D000922 ORTHO05D007418 1.2e-224 784.3 1129 43.7
Duzib205G1607 Durio zibethinus HOM05D000922 ORTHO05D007418 7.5e-224 781.6 1026 47.2
Sabra12G0059200 Salix brachista HOM05D000922 ORTHO05D007418 1.3e-223 780.8 1067 46.2
FAN18G1332 Fragaria x ananassa HOM05D000922 ORTHO05D007418 2.2e-223 780.0 1140 43.9
C01p31950 Brassica napus HOM05D000922 ORTHO05D007418 1.8e-222 776.9 670 65.5
QL10p011002 Quercus lobata HOM05D000922 ORTHO05D007418 2.7e-221 773.1 1103 43.4
TWI23G1000 Tripterygium wilfordii HOM05D000922 ORTHO05D007418 7.2e-219 765.0 1091 43.9
Gohir.D12G275700 Gossypium hirsutum HOM05D000922 ORTHO05D007418 2.1e-218 763.5 1061 45.6
Prupe.5G171800 Prunus persica HOM05D000922 ORTHO05D007418 4.7e-218 762.3 1136 42.3
Gorai.008G296200 Gossypium raimondii HOM05D000922 ORTHO05D007418 8.0e-218 761.5 1061 45.1
Sabra15G0102900 Salix brachista HOM05D000922 ORTHO05D007418 1.0e-217 761.1 1077 44.4
Cfa019149 Carpinus fangiana HOM05D000922 ORTHO05D007418 3.0e-217 759.6 1156 42.2
Haze_07516 Corylus avellana HOM05D000922 ORTHO05D007418 1.2e-216 757.7 1161 42.8
Ciclev10018588m.g Citrus clementina HOM05D000922 ORTHO05D007418 4.4e-216 755.7 1157 42.0
Lj9A446G57 Lonicera japonica HOM05D000922 ORTHO05D007418 2.8e-215 753.1 1026 44.9
RcHm_v2.0_Chr7g0193371 Rosa chinensis HOM05D000922 ORTHO05D007418 6.3e-215 751.9 1140 41.8
Rhsim08G0173800 Rhododendron simsii HOM05D000922 ORTHO05D007418 1.4e-214 750.7 1134 43.4
Hma1.2p1_2469F.1_g322680 Hydrangea macrophylla HOM05D000922 ORTHO05D007418 7.0e-214 748.4 1154 43.2
FAN18G2587 Fragaria x ananassa HOM05D000922 ORTHO05D007418 3.8e-212 742.7 1200 41.2
MD06G1172500 Malus domestica HOM05D000922 ORTHO05D007418 8.6e-212 741.5 1125 42.9
FAN13G2825 Fragaria x ananassa HOM05D000922 ORTHO05D007418 1.5e-211 740.7 1187 41.4
CANSAT80G2096 Cannabis sativa HOM05D000922 ORTHO05D007418 2.5e-211 740.0 1166 40.8
CSS0017974 Camellia sinensis var. sinensis HOM05D000922 ORTHO05D007418 3.3e-211 739.6 1134 42.5
ClCG06G017060 Citrullus lanatus HOM05D000922 ORTHO05D007418 9.5e-211 738.0 1113 41.9
PGR083G1532 Punica granatum HOM05D000922 ORTHO05D007418 8.0e-210 734.9 1085 43.8
arahy.Tifrunner.gnm1.ann1.9TFG5W Arachis hypogaea HOM05D000922 ORTHO05D007418 4.0e-209 732.6 1138 40.9
Eucgr.B00297 Eucalyptus grandis HOM05D000922 ORTHO05D007418 5.2e-209 732.3 1100 43.7
TPR.G20687 Trifolium pratense HOM05D000922 ORTHO05D007418 1.5e-208 730.7 1027 44.5
FAN04G3074 Fragaria x ananassa HOM05D000922 ORTHO05D007418 3.4e-208 729.6 949 45.3
arahy.Tifrunner.gnm1.ann1.F0ZNJX Arachis hypogaea HOM05D000922 ORTHO05D007418 7.5e-208 728.4 1138 40.4
Ca_16166_v3 Cicer arietinum L. HOM05D000922 ORTHO05D007418 1.7e-207 727.2 1012 44.2
Medtr3g077620 Medicago truncatula HOM05D000922 ORTHO05D007418 3.5e-205 719.5 1011 44.1
MD14G1178400 Malus domestica HOM05D000922 ORTHO05D007418 1.0e-204 718.0 1124 41.4
Duzib068G1349 Durio zibethinus HOM05D000922 ORTHO05D007418 1.1e-203 714.5 1062 44.0
Sed0021678 Sechium edule HOM05D000922 ORTHO05D007418 2.5e-203 713.4 1077 42.2
Glyma.04G184600 Glycine max HOM05D000922 ORTHO05D007418 7.3e-203 711.8 1021 42.9
Psat0ss3962g0400 Pisum sativum HOM05D000922 ORTHO05D007418 1.2e-202 711.1 1008 43.7
PSO478G1387 Papaver somniferum HOM05D000922 ORTHO05D007418 1.6e-202 710.7 1088 42.4
Cc04_g12110 Coffea canephora HOM05D000922 ORTHO05D007418 3.6e-202 709.5 1019 43.5
Phvul.009G177300 Phaseolus vulgaris HOM05D000922 ORTHO05D007418 1.5e-200 704.1 1064 41.9
PSO017G6576 Papaver somniferum HOM05D000922 ORTHO05D007418 2.0e-200 703.7 1116 41.2
Sc04g0001750 Simmondsia chinensis HOM05D000922 ORTHO05D007418 1.3e-199 701.0 1122 40.0
Glyma.06G181100 Glycine max HOM05D000922 ORTHO05D007418 2.2e-199 700.3 1007 42.6
Hma1.2p1_2165F.1_g315780 Hydrangea macrophylla HOM05D000922 ORTHO05D007418 2.2e-199 700.3 881 47.2
AUR62008194 Chenopodium quinoa HOM05D000922 ORTHO05D007418 1.1e-198 698.0 1037 43.0
TAR622G0946 Trochodendron aralioides HOM05D000922 ORTHO05D007418 1.1e-198 698.0 1133 39.6
VMungo1309G1607 Vigna mungo HOM05D000922 ORTHO05D007418 1.1e-198 698.0 1041 42.4
DCAR_016480 Daucus carota HOM05D000922 ORTHO05D007418 1.6e-197 694.1 1134 40.1
Lsat_1_v5_gn_5_15041 Lactuca sativa HOM05D000922 ORTHO05D007418 7.8e-197 691.8 1048 40.2
MELO3C017091.2 Cucumis melo HOM05D000922 ORTHO05D007418 1.7e-196 690.6 1129 40.3
Lj1g0015886 Lotus japonicus HOM05D000922 ORTHO05D007418 2.3e-196 690.3 1023 42.9
EL10Ac5g10730 Beta vulgaris HOM05D000922 ORTHO05D007418 1.1e-195 688.0 1136 40.1
Aqoxy3G02884 Aquilegia oxysepala HOM05D000922 ORTHO05D007418 1.5e-195 687.6 1103 40.1
Hund02754 Selenicereus undatus HOM05D000922 ORTHO05D007418 1.9e-195 687.2 1086 40.6
AUR62030946 Chenopodium quinoa HOM05D000922 ORTHO05D007418 2.8e-194 683.3 1078 42.0
HanXRQChr05g0155771 Helianthus annuus HOM05D000922 ORTHO05D007418 1.8e-193 680.6 1040 40.7
vmacro19399 Vaccinium macrocarpon HOM05D000922 ORTHO05D007418 2.3e-193 680.2 596 59.1
Peaxi162Scf00089g01840 Petunia axillaris HOM05D000922 ORTHO05D007418 4.0e-193 679.5 903 44.1
Nn4g22714 Nelumbo nucifera HOM05D000922 ORTHO05D007418 5.8e-192 675.6 1205 37.5
Migut.O00098 Erythranthe guttata HOM05D000922 ORTHO05D007418 7.5e-192 675.2 1040 41.5
Ah.02g110580 Amaranthus hybridus HOM05D000922 ORTHO05D007418 5.4e-190 669.1 1159 38.9
Sopen03g031910 Solanum pennellii HOM05D000922 ORTHO05D007418 3.5e-189 666.4 905 44.0
CAN.G1166.3 Capsicum annuum HOM05D000922 ORTHO05D007418 6.6e-188 662.1 953 42.3
Peaxi162Scf00255g01019 Petunia axillaris HOM05D000922 ORTHO05D007418 7.3e-187 658.7 1114 40.3
Lalb_Chr23g0273281 Lupinus albus HOM05D000922 ORTHO05D007418 8.9e-185 651.7 557 58.5
Nitab4.5_0001514g0050 Nicotiana tabacum HOM05D000922 ORTHO05D007418 8.9e-185 651.7 1134 39.3
MSTRG.23139 Avicennia marina HOM05D000922 ORTHO05D007418 5.8e-184 649.0 1133 40.3
Oeu016401.1 Olea europaea HOM05D000922 ORTHO05D007418 6.4e-183 645.6 951 42.8
SalBow5G3118 Salvia bowleyana HOM05D000922 ORTHO05D007418 5.4e-182 642.5 956 41.7
SGA_v2.0_scaffold90G27900 Striga asiatica HOM05D000922 ORTHO05D007418 1.2e-181 641.3 1037 39.3
SalBow5G1735 Salvia bowleyana HOM05D000922 ORTHO05D007418 1.2e-178 631.3 949 41.5
unitig_26.g9619 Utricularia gibba HOM05D000922 ORTHO05D007418 9.0e-169 598.6 1036 38.3
Gohir.A12G275000 Gossypium hirsutum HOM05D000922 ORTHO05D007418 5.8e-168 595.9 917 42.6
HPP92_009707 Vanilla planifolia HOM05D000922 ORTHO05D007418 1.7e-164 584.3 993 38.6
ATR1091G081 Amborella trichopoda HOM05D000922 ORTHO05D007418 2.3e-164 583.9 1134 37.4
Solyc03g112830.4 Solanum lycopersicum HOM05D000922 ORTHO05D007418 8.7e-164 582.0 905 40.7
CDE06G1806 Ceratophyllum demersum HOM05D000922 ORTHO05D007418 1.5e-160 571.2 1036 39.1
Os01g0549500 Oryza sativa ssp. japonica HOM05D000922 ORTHO05D007418 5.1e-156 556.2 567 51.9
Actinidia04732 Actinidia chinensis HOM05D000922 ORTHO05D007418 2.9e-151 540.4 1123 36.5
Dinv38573 Davidia involucrata HOM05D000922 ORTHO05D007418 3.5e-149 533.5 706 45.5
CsaV3_1G001450 Cucumis sativus L. HOM05D000922 ORTHO05D007418 2.2e-135 487.6 876 38.7
Zm00001eb162380 Zea mays HOM05D000922 ORTHO05D007418 1.0e-127 462.2 430 55.3
SHI17077 Sapria himalayana HOM05D000922 ORTHO05D007418 5.3e-121 439.9 757 35.9
Actinidia33077 Actinidia chinensis HOM05D000922 ORTHO05D007418 5.0e-119 433.3 383 58.2
Nitab4.5_0000025g0520 Nicotiana tabacum HOM05D000922 ORTHO05D007418 5.0e-119 433.3 1112 32.5
COL.COLO4_30068 Corchorus olitorius HOM05D000922 ORTHO05D007418 1.2e-117 428.7 842 37.2
Cpa.g.sc2974.2 Carica papaya HOM05D000922 ORTHO05D007418 1.7e-114 418.3 314 66.6
SEGI_24933 Sequoiadendron giganteum HOM05D000922 ORTHO05D007418 6.5e-111 406.4 550 42.4
Mapoly0023s0026 Marchantia polymorpha HOM05D000922 ORTHO05D007418 1.0e-108 399.1 578 42.4
SMO367G0209 Selaginella moellendorffii HOM05D000922 ORTHO05D007418 1.5e-107 395.2 500 41.6
Actinidia19330 Actinidia chinensis HOM05D000922 ORTHO05D007418 1.0e-103 382.5 846 35.8
Pp3c26_1280 Physcomitrium patens HOM05D000922 ORTHO05D007418 1.1e-102 379.0 515 42.3
SEGI_19196 Sequoiadendron giganteum HOM05D000922 ORTHO05D007418 2.5e-102 377.9 436 47.5
Cpa.g.sc2974.1 Carica papaya HOM05D000922 ORTHO05D007418 1.3e-95 355.5 713 38.3
ECA246G0682 Erigeron canadensis HOM05D000922 ORTHO05D007418 8.6e-71 273.1 677 31.5
Dinv20638 Davidia involucrata HOM05D000922 ORTHO05D007418 9.5e-62 243.0 229 56.3
ECA246G4214 Erigeron canadensis HOM05D000922 ORTHO05D007418 1.1e-60 239.6 221 54.3
CDE07G0520 Ceratophyllum demersum HOM05D000922 ORTHO05D007418 6.2e-29 134.0 274 32.5
PRCOL_00005721 Prasinoderma coloniale HOM05D000922 ORTHO05D007418 1.7e-18 99.4 239 32.2
Lalb_Chr23g0273291 Lupinus albus HOM05D000922 ORTHO05D007418 1.9e-17 95.9 329 30.1
Psat4g066520 Pisum sativum HOM05D001026 ORTHO05D007418 3.9e-15 88.2 80 53.8
vmacro19400 Vaccinium macrocarpon HOM05D000922 ORTHO05D007418 1.7e-13 82.8 520 25.0
Dinv38572 Davidia involucrata HOM05D000922 ORTHO05D008200 2.8e-13 82.0 103 54.4
Actinidia33076 Actinidia chinensis HOM05D000922 ORTHO05D007418 6.3e-13 80.9 160 38.1
Peaxi162Scf00397g00009 Petunia axillaris HOM05D000922 ORTHO05D015732 5.3e-12 77.8 57 59.6
Peaxi162Scf00470g00024 Petunia axillaris HOM05D000861 ORTHO05D007418 6.9e-12 77.4 81 46.9
Peaxi162Scf00009g02111 Petunia axillaris HOM05D000861 ORTHO05D007418 9.1e-12 77.0 104 43.3
Peaxi162Scf01130g00212 Petunia axillaris HOM05D000861 ORTHO05D007418 1.5e-11 76.3 55 61.8
CAN.G1651.1 Capsicum annuum HOM05D003439 ORTHO05D000484 2.0e-11 75.9 64 56.2
Peaxi162Scf00304g01332 Petunia axillaris HOM05D000922 ORTHO05D007418 1.0e-10 73.6 53 62.3
FAN04G1664 Fragaria x ananassa HOM05D000922 ORTHO05D007418 5.5e-09 67.8 99 44.4
C03p37040 Brassica napus HOM05D000922 ORTHO05D007418 2.3e-07 62.4 113 39.8


User provided reference genes

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