Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR156900 Cardamine hirsuta HOM05D003533 ORTHO05D004009 8.0e-28 126.7 81 100.0
Thhalv10010873m.g Eutrema salsugineum HOM05D003533 ORTHO05D004009 5.6e-21 104.0 81 79.0
AL5G27512 Arabidopsis lyrata HOM05D003533 ORTHO05D004009 1.4e-19 99.4 81 66.7
Carub.0005s1428 Capsella rubella HOM05D003533 ORTHO05D004009 2.6e-18 95.1 81 65.4
Aa31LG4G16780 Aethionema arabicum HOM05D003533 ORTHO05D004009 3.4e-18 94.7 83 69.9
Sp5g13860 Schrenkiella parvula HOM05D003533 ORTHO05D004009 3.5e-15 84.7 81 64.2
Thecc.03G004200 Theobroma cacao HOM05D003533 ORTHO05D004009 7.3e-13 77.0 77 53.2
QL10p012332 Quercus lobata HOM05D003533 ORTHO05D004009 3.6e-12 74.7 76 52.6
Thecc.03G004000 Theobroma cacao HOM05D003533 ORTHO05D004009 4.7e-12 74.3 77 51.9
Duzib084G0973 Durio zibethinus HOM05D003533 ORTHO05D004009 6.2e-12 73.9 77 49.4
Oeu005054.1 Olea europaea HOM05D003533 ORTHO05D004009 1.1e-11 73.2 79 51.9
Ah.02g112790 Amaranthus hybridus HOM05D003533 ORTHO05D004009 1.8e-11 72.4 85 57.6
A06p15230 Brassica napus HOM05D003533 ORTHO05D004009 1.8e-11 72.4 86 54.7
BraA06t24637Z Brassica rapa HOM05D003533 ORTHO05D004009 1.8e-11 72.4 86 54.7
BcaB03g14468 Brassica carinata HOM05D003533 ORTHO05D004009 2.3e-11 72.0 83 47.0
BraA06t25683Z Brassica rapa HOM05D013399 ORTHO05D004009 3.1e-11 71.6 79 58.2
MELO3C017124.2 Cucumis melo HOM05D003533 ORTHO05D004009 3.1e-11 71.6 77 50.6
BcaB07g31922 Brassica carinata HOM05D003533 ORTHO05D004009 4.0e-11 71.2 86 46.5
BcaC07g41276 Brassica carinata HOM05D003533 ORTHO05D004009 4.0e-11 71.2 87 50.6
BcaB03g12939 Brassica carinata HOM05D003533 ORTHO05D004009 5.2e-11 70.9 84 50.0
TWI81G0654 Tripterygium wilfordii HOM05D003533 ORTHO05D004009 5.2e-11 70.9 94 47.9
A09p59550 Brassica napus HOM05D003533 ORTHO05D004009 6.8e-11 70.5 85 45.9
Oeu005690.1 Olea europaea HOM05D003533 ORTHO05D004009 6.8e-11 70.5 79 48.1
TWI15G0955 Tripterygium wilfordii HOM05D003533 ORTHO05D004009 8.9e-11 70.1 75 49.3
A06p27440 Brassica napus HOM05D013399 ORTHO05D004009 1.2e-10 69.7 79 57.0
Sed0002579 Sechium edule HOM05D003533 ORTHO05D004009 1.2e-10 69.7 76 47.4
CARHR019640 Cardamine hirsuta HOM05D003533 ORTHO05D004009 1.5e-10 69.3 81 46.9
BcaC01g02313 Brassica carinata HOM05D013399 ORTHO05D004009 2.0e-10 68.9 79 55.7
BolC3t18939H Brassica oleracea HOM05D013399 ORTHO05D004009 2.0e-10 68.9 79 55.7
BraA09t41332Z Brassica rapa HOM05D003533 ORTHO05D004009 2.0e-10 68.9 81 46.9
Thhalv10009213m.g Eutrema salsugineum HOM05D003533 ORTHO05D004009 2.6e-10 68.6 89 53.9
AL1G31580 Arabidopsis lyrata HOM05D003533 ORTHO05D004009 3.4e-10 68.2 85 45.9
AT1G19020 Arabidopsis thaliana HOM05D003533 ORTHO05D004009 3.4e-10 68.2 87 46.0
CSS0013527 Camellia sinensis var. sinensis HOM05D003533 ORTHO05D004009 3.4e-10 68.2 77 57.1
CSS0016862 Camellia sinensis var. sinensis HOM05D003533 ORTHO05D004009 3.4e-10 68.2 77 57.1
COL.COLO4_21432 Corchorus olitorius HOM05D003533 ORTHO05D004009 3.4e-10 68.2 77 49.4
Glyma.17G093500 Glycine max HOM05D003533 ORTHO05D004009 3.4e-10 68.2 78 46.2
Manes.06G100300 Manihot esculenta HOM05D003533 ORTHO05D004009 3.4e-10 68.2 79 48.1
TAR622G1413 Trochodendron aralioides HOM05D003533 ORTHO05D004009 3.4e-10 68.2 79 46.8
FAN22G0766 Fragaria x ananassa HOM05D003533 ORTHO05D004009 4.4e-10 67.8 87 46.0
Manes.14G070400 Manihot esculenta HOM05D003533 ORTHO05D004009 4.4e-10 67.8 85 45.9
Sp1g16980 Schrenkiella parvula HOM05D003533 ORTHO05D004009 4.4e-10 67.8 87 48.3
C08p42830 Brassica napus HOM05D003533 ORTHO05D004009 5.8e-10 67.4 81 45.7
BolC8t51839H Brassica oleracea HOM05D003533 ORTHO05D004009 5.8e-10 67.4 81 45.7
HanXRQChr09g0237871 Helianthus annuus HOM05D003533 ORTHO05D004009 9.9e-10 66.6 78 47.4
ECA247G1125 Erigeron canadensis HOM05D003533 ORTHO05D004009 1.3e-09 66.2 78 47.4
Medtr4g106500 Medicago truncatula HOM05D003533 ORTHO05D004009 1.3e-09 66.2 77 48.1
Phvul.003G196800 Phaseolus vulgaris HOM05D003533 ORTHO05D004009 1.7e-09 65.9 78 47.4
C08p19120 Brassica napus HOM05D003533 ORTHO05D004009 2.9e-09 65.1 44 70.5
Eucgr.K02881 Eucalyptus grandis HOM05D003533 ORTHO05D004009 2.9e-09 65.1 80 42.5
Lsat_1_v5_gn_1_11280 Lactuca sativa HOM05D003533 ORTHO05D004009 2.9e-09 65.1 76 44.7
unitig_62.g23572 Utricularia gibba HOM05D006519 ORTHO05D008306 2.9e-09 65.1 81 45.7
CiPaw.06G076000 Carya illinoinensis HOM05D003533 ORTHO05D004009 3.7e-09 64.7 85 48.2
CiPaw.06G076200 Carya illinoinensis HOM05D003533 ORTHO05D004009 3.7e-09 64.7 85 48.2
FAN07G1024 Fragaria x ananassa HOM05D003533 ORTHO05D004009 3.7e-09 64.7 87 44.8
FAN18G0586 Fragaria x ananassa HOM05D003533 ORTHO05D004009 3.7e-09 64.7 82 50.0
Lsat_1_v5_gn_1_12101 Lactuca sativa HOM05D003533 ORTHO05D004009 3.7e-09 64.7 79 44.3
QL03p067197 Quercus lobata HOM05D003533 ORTHO05D004009 3.7e-09 64.7 82 43.9
A08p30040 Brassica napus HOM05D003533 ORTHO05D004009 4.9e-09 64.3 80 47.5
BraA08t34939Z Brassica rapa HOM05D003533 ORTHO05D004009 4.9e-09 64.3 80 47.5
FAN17G1844 Fragaria x ananassa HOM05D003533 ORTHO05D004009 4.9e-09 64.3 87 43.7
Glyma.05G033600 Glycine max HOM05D003533 ORTHO05D004009 4.9e-09 64.3 78 46.2
Lj4g0015145 Lotus japonicus HOM05D003533 ORTHO05D004009 4.9e-09 64.3 77 46.8
CANSAT54G2961 Cannabis sativa HOM05D003533 ORTHO05D004009 6.4e-09 63.9 88 47.7
Actinidia19080 Actinidia chinensis HOM05D003533 ORTHO05D004009 8.3e-09 63.5 44 70.5
FvH4_4g35190 Fragaria vesca HOM05D003533 ORTHO05D004009 8.3e-09 63.5 80 45.0
Rhsim12G0161500 Rhododendron simsii HOM05D003533 ORTHO05D004009 8.3e-09 63.5 77 49.4
CiPaw.06G076100 Carya illinoinensis HOM05D003533 ORTHO05D004009 1.1e-08 63.2 87 48.3
CiPaw.12G022900 Carya illinoinensis HOM05D003533 ORTHO05D004009 1.1e-08 63.2 77 45.5
MD16G1084900 Malus domestica HOM05D003533 ORTHO05D004009 1.1e-08 63.2 82 43.9
BolC8t49535H Brassica oleracea HOM05D003533 ORTHO05D004009 1.4e-08 62.8 44 68.2
Eucgr.B00337 Eucalyptus grandis HOM05D003533 ORTHO05D004009 1.4e-08 62.8 77 46.8
BcaC05g25801 Brassica carinata HOM05D003533 ORTHO05D004009 2.4e-08 62.0 86 51.2
BcaC05g25802 Brassica carinata HOM05D003533 ORTHO05D004009 2.4e-08 62.0 86 51.2
C05p17410 Brassica napus HOM05D003533 ORTHO05D004009 2.4e-08 62.0 86 51.2
BolC5t30441H Brassica oleracea HOM05D003533 ORTHO05D004009 2.4e-08 62.0 86 51.2
FAN12G1992 Fragaria x ananassa HOM05D003533 ORTHO05D004009 2.4e-08 62.0 80 43.8
FAN13G2147 Fragaria x ananassa HOM05D003533 ORTHO05D004009 2.4e-08 62.0 82 48.8
RcHm_v2.0_Chr4g0444801 Rosa chinensis HOM05D003533 ORTHO05D004009 2.4e-08 62.0 89 41.6
PSO013G0065 Papaver somniferum HOM05D003533 ORTHO05D004009 3.2e-08 61.6 79 45.6
vmacro16587 Vaccinium macrocarpon HOM05D003533 ORTHO05D004009 3.2e-08 61.6 79 44.3
CiPaw.06G076300 Carya illinoinensis HOM05D003533 ORTHO05D004009 4.1e-08 61.2 87 47.1
Migut.I00058 Erythranthe guttata HOM05D003533 ORTHO05D004009 4.1e-08 61.2 76 44.7
Glyma.04G178500 Glycine max HOM05D003533 ORTHO05D004009 4.1e-08 61.2 77 48.1
Lsat_1_v5_gn_1_11220 Lactuca sativa HOM05D003533 ORTHO05D004009 4.1e-08 61.2 76 43.4
MD06G1181300 Malus domestica HOM05D003533 ORTHO05D004009 5.4e-08 60.8 79 44.3
CiPaw.11G032200 Carya illinoinensis HOM05D003533 ORTHO05D004009 7.1e-08 60.5 82 45.1
Psat0s489g0040 Pisum sativum HOM05D003533 ORTHO05D004009 7.1e-08 60.5 85 43.5
TAR629G1875 Trochodendron aralioides HOM05D003533 ORTHO05D004009 7.1e-08 60.5 86 44.2
Glyma.06G186200 Glycine max HOM05D003533 ORTHO05D004009 9.2e-08 60.1 85 43.5
Sopen03g032860 Solanum pennellii HOM05D003533 ORTHO05D004009 9.2e-08 60.1 78 46.2
PSO013G0048 Papaver somniferum HOM05D003533 ORTHO05D004009 1.2e-07 59.7 79 48.1
Hma1.2p1_0160F.1_g070540 Hydrangea macrophylla HOM05D003533 ORTHO05D004009 1.6e-07 59.3 80 46.2
Aqoxy3G03117 Aquilegia oxysepala HOM05D003533 ORTHO05D004009 2.1e-07 58.9 78 56.4
Peaxi162Scf01141g00003 Petunia axillaris HOM05D003533 ORTHO05D004009 2.1e-07 58.9 79 43.0
Rhsim12G0161300 Rhododendron simsii HOM05D003533 ORTHO05D004009 2.1e-07 58.9 77 46.8
MBI14_g31147_MAGBIO Magnolia biondii HOM05D003533 ORTHO05D004009 2.7e-07 58.5 75 45.3
Rhsim12G0161400 Rhododendron simsii HOM05D003533 ORTHO05D004009 2.7e-07 58.5 72 45.8
THA.LOC104821473 Tarenaya hassleriana HOM05D003533 ORTHO05D004009 2.7e-07 58.5 79 45.6
Hma1.2p1_0002F.1_g002860 Hydrangea macrophylla HOM05D003533 ORTHO05D004009 3.5e-07 58.2 77 45.5
Nitab4.5_0002312g0100 Nicotiana tabacum HOM05D003533 ORTHO05D004009 3.5e-07 58.2 80 41.2
Sc04g0002090 Simmondsia chinensis HOM05D003533 ORTHO05D004009 3.5e-07 58.2 82 52.4
TPR.G31485 Trifolium pratense HOM05D003533 ORTHO05D004009 3.5e-07 58.2 83 43.4
CsaV3_1G001820 Cucumis sativus L. HOM05D003533 ORTHO05D004009 4.6e-07 57.8 75 41.3
Nitab4.5_0002059g0090 Nicotiana tabacum HOM05D003533 ORTHO05D004009 6.0e-07 57.4 80 42.5
Thecc.02G240400 Theobroma cacao HOM05D003533 ORTHO05D004009 6.0e-07 57.4 85 41.2
Actinidia34961 Actinidia chinensis HOM05D003533 ORTHO05D004009 7.8e-07 57.0 76 43.4
AT3G48180 Arabidopsis thaliana HOM05D013399 ORTHO05D019752 7.8e-07 57.0 82 45.1
Cc11_g14110 Coffea canephora HOM05D003533 ORTHO05D004009 7.8e-07 57.0 87 41.4
Lalb_Chr12g0201361 Lupinus albus HOM05D003533 ORTHO05D004009 7.8e-07 57.0 77 46.8
Ca_16210_v3 Cicer arietinum L. HOM05D003533 ORTHO05D004009 1.0e-06 56.6 79 44.3
MBI14_g31145_MAGBIO Magnolia biondii HOM05D003533 ORTHO05D004009 1.0e-06 56.6 75 42.7
MD14G1187200 Malus domestica HOM05D003533 ORTHO05D004009 1.3e-06 56.2 79 44.3
TPR.G37447 Trifolium pratense HOM05D003533 ORTHO05D004009 1.3e-06 56.2 74 45.9
COL.COLO4_37881 Corchorus olitorius HOM05D003533 ORTHO05D004009 2.3e-06 55.5 75 41.3
Medtr3g078420 Medicago truncatula HOM05D003533 ORTHO05D004009 2.3e-06 55.5 83 44.6
Nitab4.5_0002059g0100 Nicotiana tabacum HOM05D003533 ORTHO05D004009 2.3e-06 55.5 89 39.3
Aa31LG7G3800 Aethionema arabicum HOM05D006783 ORTHO05D008330 3.0e-06 55.1 74 44.6
Nitab4.5_0002312g0110 Nicotiana tabacum HOM05D003533 ORTHO05D004009 3.0e-06 55.1 83 41.0
Solyc03g113810.1 Solanum lycopersicum HOM05D003533 ORTHO05D004009 3.9e-06 54.7 79 43.0
ATR0712G042 Amborella trichopoda HOM05D003533 ORTHO05D004009 5.1e-06 54.3 80 38.8
HanXRQChr09g0271891 Helianthus annuus HOM05D003533 ORTHO05D004009 5.1e-06 54.3 42 54.8
SalBow2G1603 Salvia bowleyana HOM05D003533 ORTHO05D004009 5.1e-06 54.3 78 41.0
SalBow2G3186 Salvia bowleyana HOM05D003533 ORTHO05D004009 5.1e-06 54.3 78 41.0
Phvul.009G182200 Phaseolus vulgaris HOM05D003533 ORTHO05D004009 6.6e-06 53.9 83 42.2
A01p25480 Brassica napus HOM05D013399 ORTHO05D019752 8.6e-06 53.5 80 43.8
BraA01t02465Z Brassica rapa HOM05D013399 ORTHO05D019752 8.6e-06 53.5 80 43.8
Cfa009093 Carpinus fangiana HOM05D003533 ORTHO05D004009 8.6e-06 53.5 81 42.0


User provided reference genes

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