Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR156700 Cardamine hirsuta HOM05D005796 ORTHO05D007054 1.1e-139 500.0 253 100.0
AT3G47980 Arabidopsis thaliana HOM05D005796 ORTHO05D007054 9.3e-115 417.2 258 84.1
Carub.0005s1409 Capsella rubella HOM05D005796 ORTHO05D007054 1.6e-114 416.4 258 82.9
Sp5g14000 Schrenkiella parvula HOM05D005796 ORTHO05D007054 2.1e-111 406.0 259 79.5
BcaB05g22893 Brassica carinata HOM05D005796 ORTHO05D007054 6.2e-111 404.4 254 80.7
AL5G27300 Arabidopsis lyrata HOM05D005796 ORTHO05D007054 8.1e-111 404.1 258 80.6
BraA01t02488Z Brassica rapa HOM05D005796 ORTHO05D007054 9.0e-110 400.6 258 78.3
A01p25720 Brassica napus HOM05D005796 ORTHO05D007054 2.6e-109 399.1 258 77.9
C01p32410 Brassica napus HOM05D005796 ORTHO05D007054 1.3e-108 396.7 258 77.9
BolC1t03180H Brassica oleracea HOM05D005796 ORTHO05D007054 1.3e-108 396.7 258 77.9
BraA06t25046Z Brassica rapa HOM05D005796 ORTHO05D007054 2.4e-107 392.5 258 79.5
A06p19660 Brassica napus HOM05D005796 ORTHO05D007054 1.3e-105 386.7 258 78.7
Thhalv10010656m.g Eutrema salsugineum HOM05D005796 ORTHO05D007054 4.3e-96 355.1 257 74.3
AL8G39690 Arabidopsis lyrata HOM05D005796 ORTHO05D007054 6.3e-87 324.7 256 69.9
Aa31LG11G960 Aethionema arabicum HOM05D005796 ORTHO05D007054 1.4e-86 323.6 262 66.4
AT5G62720 Arabidopsis thaliana HOM05D005796 ORTHO05D007054 1.3e-84 317.0 256 67.2
BcaB01g00857 Brassica carinata HOM05D005796 ORTHO05D007054 2.9e-84 315.8 208 77.4
BcaB02g09686 Brassica carinata HOM05D005796 ORTHO05D007054 6.5e-84 314.7 262 66.4
Carub.0008s2345 Capsella rubella HOM05D005796 ORTHO05D007054 6.5e-84 314.7 256 67.2
CARHR276510 Cardamine hirsuta HOM05D005796 ORTHO05D007054 6.5e-84 314.7 256 68.0
Thhalv10004798m.g Eutrema salsugineum HOM05D005796 ORTHO05D007054 1.6e-82 310.1 263 66.2
BcaC09g49836 Brassica carinata HOM05D005796 ORTHO05D007054 1.4e-81 307.0 208 75.5
BolC9t53794H Brassica oleracea HOM05D005796 ORTHO05D007054 3.0e-81 305.8 256 64.5
BraA06t25896Z Brassica rapa HOM05D005796 ORTHO05D007054 3.0e-81 305.8 259 63.7
BcaC04g23395 Brassica carinata HOM05D005796 ORTHO05D007054 1.1e-80 303.9 256 64.8
A09p07830 Brassica napus HOM05D005796 ORTHO05D007054 1.5e-80 303.5 256 64.5
BraA09t36434Z Brassica rapa HOM05D005796 ORTHO05D007054 1.5e-80 303.5 256 64.5
Sp2g25890 Schrenkiella parvula HOM05D005796 ORTHO05D007054 1.5e-80 303.5 261 66.3
BcaC01g02511 Brassica carinata HOM05D005796 ORTHO05D007054 3.3e-80 302.4 259 63.3
BolC3t18656H Brassica oleracea HOM05D005796 ORTHO05D007054 3.3e-80 302.4 259 63.3
THA.LOC104821456 Tarenaya hassleriana HOM05D005796 ORTHO05D007054 1.2e-77 293.9 255 61.2
BcaNung01383 Brassica carinata HOM05D005796 ORTHO05D007054 2.0e-77 293.1 254 63.8
BcaNung07157 Brassica carinata HOM05D005796 ORTHO05D007054 1.6e-74 283.5 203 72.9
C03p64010 Brassica napus HOM05D000012 ORTHO05D002455 2.1e-74 283.1 247 62.3
BcaB02g09676 Brassica carinata HOM05D005796 ORTHO05D007054 2.7e-74 282.7 245 64.1
A06p29510 Brassica napus HOM05D000012 ORTHO05D002455 2.7e-74 282.7 247 62.3
Actinidia04922 Actinidia chinensis HOM05D005796 ORTHO05D007054 7.9e-74 281.2 247 58.7
Thecc.03G078500 Theobroma cacao HOM05D005796 ORTHO05D007054 1.0e-73 280.8 217 65.0
Prupe.5G185800 Prunus persica HOM05D005796 ORTHO05D007054 1.8e-73 280.0 215 65.6
SGA_v2.0_scaffold7G04086 Striga asiatica HOM05D005796 ORTHO05D007054 1.1e-72 277.3 178 74.2
Dinv38663 Davidia involucrata HOM05D005796 ORTHO05D007054 1.5e-72 276.9 254 57.9
Migut.D01857 Erythranthe guttata HOM05D005796 ORTHO05D007054 2.0e-72 276.6 178 73.0
Gohir.A07G065400 Gossypium hirsutum HOM05D005796 ORTHO05D007054 3.3e-72 275.8 193 68.9
Duzib084G0674 Durio zibethinus HOM05D005796 ORTHO05D007054 4.4e-72 275.4 193 68.9
TAR481G0014 Trochodendron aralioides HOM05D005796 ORTHO05D007054 4.4e-72 275.4 178 73.0
Gorai.001G073800 Gossypium raimondii HOM05D005796 ORTHO05D007054 5.7e-72 275.0 193 68.9
Sopen03g032340 Solanum pennellii HOM05D005796 ORTHO05D007054 5.7e-72 275.0 167 77.2
MD06G1187500 Malus domestica HOM05D005796 ORTHO05D007054 9.7e-72 274.2 204 66.2
Manes.14G074300 Manihot esculenta HOM05D005796 ORTHO05D007054 1.7e-71 273.5 167 76.6
Potri.015G065500 Populus trichocarpa HOM05D005796 ORTHO05D007054 1.7e-71 273.5 179 73.2
Cc04_g15610 Coffea canephora HOM05D005796 ORTHO05D007054 2.2e-71 273.1 196 67.9
MSTRG.4407 Avicennia marina HOM05D005796 ORTHO05D007054 2.8e-71 272.7 178 74.2
TWI60G1143 Tripterygium wilfordii HOM05D005796 ORTHO05D007054 2.8e-71 272.7 201 66.7
Ciclev10021819m.g Citrus clementina HOM05D005796 ORTHO05D007054 3.7e-71 272.3 229 62.4
GSVIVG01008066001 Vitis vinifera HOM05D005796 ORTHO05D007054 4.8e-71 271.9 178 71.3
Solyc03g113280.3 Solanum lycopersicum HOM05D005796 ORTHO05D007054 6.3e-71 271.6 167 76.0
CiPaw.11G037800 Carya illinoinensis HOM05D005796 ORTHO05D007054 1.4e-70 270.4 230 59.6
Peaxi162Scf00009g00426 Petunia axillaris HOM05D005796 ORTHO05D007054 1.4e-70 270.4 170 75.3
Nitab4.5_0004605g0110 Nicotiana tabacum HOM05D005796 ORTHO05D007054 1.8e-70 270.0 170 74.7
Nitab4.5_0005402g0010 Nicotiana tabacum HOM05D005796 ORTHO05D007054 2.4e-70 269.6 234 58.5
RcHm_v2.0_Chr7g0180561 Rosa chinensis HOM05D005796 ORTHO05D007054 3.1e-70 269.2 178 71.3
PGSC0003DMG400025332 Solanum tuberosum HOM05D005796 ORTHO05D007054 3.1e-70 269.2 219 61.6
CANSAT80G0862 Cannabis sativa HOM05D005796 ORTHO05D007054 9.1e-70 267.7 168 71.4
Atru.chr9.2321 Acer truncatum HOM05D005796 ORTHO05D007054 1.2e-69 267.3 238 60.9
Aa31LG4G16620 Aethionema arabicum HOM05D005796 ORTHO05D007054 1.2e-69 267.3 204 71.6
MD14G1193900 Malus domestica HOM05D005796 ORTHO05D007054 1.2e-69 267.3 188 69.1
FAN13G2643 Fragaria x ananassa HOM05D005796 ORTHO05D007054 2.6e-69 266.2 178 70.8
Lalb_Chr13g0303431 Lupinus albus HOM05D005796 ORTHO05D007054 1.0e-68 264.2 178 71.3
AUR62008352 Chenopodium quinoa HOM05D005796 ORTHO05D007054 2.9e-68 262.7 192 65.1
Hma1.2p1_0002F.1_g003270 Hydrangea macrophylla HOM05D005796 ORTHO05D007054 3.8e-68 262.3 191 66.0
Cpa.g.sc414.2 Carica papaya HOM05D005796 ORTHO05D007054 5.0e-68 261.9 207 65.7
PSO017G2472 Papaver somniferum HOM05D005796 ORTHO05D007054 1.5e-67 260.4 192 66.1
Sc12g0006170 Simmondsia chinensis HOM05D005796 ORTHO05D007054 1.9e-67 260.0 188 67.0
FAN08G2559 Fragaria x ananassa HOM05D005796 ORTHO05D007054 5.5e-67 258.5 194 64.9
HanXRQChr02g0045201 Helianthus annuus HOM05D005796 ORTHO05D007054 7.2e-67 258.1 167 71.3
PSO478G3339 Papaver somniferum HOM05D005796 ORTHO05D007054 7.2e-67 258.1 192 66.1
EL10Ac5g10940 Beta vulgaris HOM05D005796 ORTHO05D007054 9.4e-67 257.7 192 63.0
FAN18G3372 Fragaria x ananassa HOM05D005796 ORTHO05D007054 1.6e-66 256.9 213 60.6
arahy.Tifrunner.gnm1.ann1.U2VSD4 Arachis hypogaea HOM05D005796 ORTHO05D007054 3.6e-66 255.8 167 71.9
arahy.Tifrunner.gnm1.ann1.NXA9BP Arachis hypogaea HOM05D005796 ORTHO05D007054 6.1e-66 255.0 167 71.3
Hund02671 Selenicereus undatus HOM05D005796 ORTHO05D007054 8.0e-66 254.6 182 67.0
ECA247G3495 Erigeron canadensis HOM05D005796 ORTHO05D007054 1.0e-65 254.2 168 69.0
FAN04G0326 Fragaria x ananassa HOM05D005796 ORTHO05D007054 1.0e-65 254.2 213 61.0
Gohir.D07G069900 Gossypium hirsutum HOM05D005796 ORTHO05D007054 1.4e-65 253.8 193 65.8
DCAR_026077 Daucus carota HOM05D005796 ORTHO05D007054 2.3e-65 253.1 190 65.8
CsaV3_1G007940 Cucumis sativus L. HOM05D005796 ORTHO05D007054 4.0e-65 252.3 205 63.4
Eucgr.B00422 Eucalyptus grandis HOM05D005796 ORTHO05D007054 4.0e-65 252.3 156 76.9
ClCG01G014370 Citrullus lanatus HOM05D005796 ORTHO05D007054 6.7e-65 251.5 162 72.2
Oeu048731.1 Olea europaea HOM05D005796 ORTHO05D007054 8.8e-65 251.1 164 72.6
MBI03_g20464_MAGBIO Magnolia biondii HOM05D005796 ORTHO05D007054 1.5e-64 250.4 167 72.5
unitig_899.g15402 Utricularia gibba HOM05D003955 ORTHO05D004684 1.5e-64 250.4 200 63.5
Lsat_1_v5_gn_1_10700 Lactuca sativa HOM05D005796 ORTHO05D007054 2.0e-64 250.0 185 63.8
MELO3C002210.2 Cucumis melo HOM05D005796 ORTHO05D007054 4.4e-64 248.8 203 63.1
Glyma.17G096600 Glycine max HOM05D005796 ORTHO05D007054 7.5e-64 248.1 178 65.7
VMungo1215G0702 Vigna mungo HOM05D005796 ORTHO05D007054 1.7e-63 246.9 181 64.1
Aqoxy3G00785 Aquilegia oxysepala HOM05D005796 ORTHO05D007054 3.7e-63 245.7 192 63.0
Sed0020047 Sechium edule HOM05D005796 ORTHO05D007054 4.8e-63 245.4 191 64.4
ATR0665G316 Amborella trichopoda HOM05D005796 ORTHO05D007054 1.4e-62 243.8 211 55.9
unitig_0.g783 Utricularia gibba HOM05D005796 ORTHO05D007054 1.4e-62 243.8 170 67.1
C09p08810 Brassica napus HOM05D005796 ORTHO05D007054 1.8e-62 243.4 222 63.1
Sabra15G0090700 Salix brachista HOM05D005796 ORTHO05D007054 2.4e-62 243.0 236 55.5
TPR.G38380 Trifolium pratense HOM05D005796 ORTHO05D007054 5.3e-62 241.9 177 63.8
Phvul.003G193000 Phaseolus vulgaris HOM05D005796 ORTHO05D007054 9.1e-62 241.1 178 63.5
CDE02G2117 Ceratophyllum demersum HOM05D005796 ORTHO05D007054 2.0e-61 240.0 179 66.5
Ca_21851_v3 Cicer arietinum L. HOM05D005796 ORTHO05D007054 5.9e-61 238.4 177 63.3
Lj4g0017253 Lotus japonicus HOM05D005796 ORTHO05D007054 1.3e-60 237.3 186 58.6
Medtr4g107630 Medicago truncatula HOM05D005796 ORTHO05D007054 7.2e-59 231.5 177 62.1
Os03g0684700 Oryza sativa ssp. japonica HOM05D005796 ORTHO05D007054 2.7e-58 229.6 154 69.5
AUR62021745 Chenopodium quinoa HOM05D005796 ORTHO05D007054 1.2e-56 224.2 144 72.9
vmacro19431 Vaccinium macrocarpon HOM05D005796 ORTHO05D007054 9.8e-56 221.1 205 54.6
Zm00001eb217240 Zea mays HOM05D005796 ORTHO05D007054 2.4e-54 216.5 177 59.9
SEGI_40570 Sequoiadendron giganteum HOM05D005796 ORTHO05D007054 3.1e-54 216.1 155 63.2
Haze_07383 Corylus avellana HOM05D005796 ORTHO05D007054 3.5e-53 212.6 160 66.2
PGR083G2169 Punica granatum HOM05D005796 ORTHO05D007054 1.3e-52 210.7 152 67.8
COL.COLO4_37386 Corchorus olitorius HOM05D005796 ORTHO05D007054 9.8e-48 194.5 124 74.2
SalBow7G0869 Salvia bowleyana HOM05D005796 ORTHO05D007054 6.3e-47 191.8 152 60.5
Mapoly0029s0058 Marchantia polymorpha HOM05D005796 ORTHO05D007054 6.6e-44 181.8 155 52.9
PGR083G0992 Punica granatum HOM05D005796 ORTHO05D007054 6.6e-44 181.8 134 66.4
Lj9A459G48 Lonicera japonica HOM05D005796 ORTHO05D007054 7.3e-43 178.3 128 64.1
SMO356G0151 Selaginella moellendorffii HOM05D005796 ORTHO05D007054 1.2e-42 177.6 139 59.7
AagrBONN_evm.TU.Sc2ySwM_228.2536 Anthoceros agrestis HOM05D005796 ORTHO05D007054 1.6e-42 177.2 197 46.2
QL10p015509 Quercus lobata HOM05D005796 ORTHO05D007054 2.4e-38 163.3 95 83.2
Sabra12G0050500 Salix brachista HOM05D005796 ORTHO05D007054 1.8e-33 147.1 145 56.6
Zm00001eb053360 Zea mays HOM05D005796 ORTHO05D007054 6.8e-33 145.2 104 63.5
CAN.G4519.1 Capsicum annuum HOM05D005796 ORTHO05D007054 6.4e-31 138.7 82 80.5
BcaC01g01754 Brassica carinata HOM05D005796 ORTHO05D007054 4.1e-30 136.0 114 65.8
C03p72260 Brassica napus HOM05D005796 ORTHO05D007054 4.1e-30 136.0 114 65.8
BolC3t19521H Brassica oleracea HOM05D005796 ORTHO05D007054 4.1e-30 136.0 114 65.8
FvH4_5g15530 Fragaria vesca HOM05D005796 ORTHO05D007054 2.7e-21 106.7 98 52.0
QL10p015507 Quercus lobata HOM05D005796 ORTHO05D007054 6.6e-20 102.1 78 59.0
Sed0018874 Sechium edule HOM05D005796 ORTHO05D007054 1.1e-17 94.7 117 43.6
Nn4g23032 Nelumbo nucifera HOM05D005796 ORTHO05D007054 1.4e-14 84.3 102 44.1
Glyma.05G030200 Glycine max HOM05D005796 ORTHO05D007054 2.7e-13 80.1 50 72.0
C09p08830 Brassica napus HOM05D005796 ORTHO05D007054 2.0e-08 63.9 36 72.2
Rhsim08G0160200 Rhododendron simsii HOM05D005796 ORTHO05D007054 5.8e-08 62.4 56 44.6
Cre11.g467679 Chlamydomonas reinhardtii HOM05D019738 ORTHO05D022279 6.4e-07 58.9 143 27.3


User provided reference genes

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