Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR156590 Cardamine hirsuta HOM05D004889 ORTHO05D005478 2.0e-213 745.7 447 100.0
Aa31LG4G16530 Aethionema arabicum HOM05D004889 ORTHO05D005478 1.2e-128 464.2 489 67.1
Carub.0008s2340 Capsella rubella HOM05D004889 ORTHO05D005478 1.8e-100 370.5 473 61.5
AL8G39620 Arabidopsis lyrata HOM05D004889 ORTHO05D005478 2.4e-97 360.1 477 61.6
BolC3t18668H Brassica oleracea HOM05D004889 ORTHO05D005478 5.3e-97 359.0 477 61.0
CARHR276450 Cardamine hirsuta HOM05D004889 ORTHO05D005478 6.9e-97 358.6 476 60.1
BcaC01g02501 Brassica carinata HOM05D004889 ORTHO05D005478 3.4e-96 356.3 486 59.7
AT5G62640 Arabidopsis thaliana HOM05D004889 ORTHO05D005478 2.1e-93 347.1 472 62.5
C03p64130 Brassica napus HOM05D004889 ORTHO05D005478 7.4e-91 338.6 479 59.3
BcaB02g09666 Brassica carinata HOM05D004889 ORTHO05D005478 2.9e-87 326.6 485 58.6
Sp2g25820 Schrenkiella parvula HOM05D004889 ORTHO05D005478 3.8e-87 326.2 470 59.4
Thhalv10003972m.g Eutrema salsugineum HOM05D004889 ORTHO05D005478 9.4e-86 321.6 432 60.6
A06p29350 Brassica napus HOM05D004889 ORTHO05D005478 1.6e-85 320.9 488 57.0
BraA06t25888Z Brassica rapa HOM05D004889 ORTHO05D005478 8.8e-84 315.1 488 56.4
CANSAT80G0562 Cannabis sativa HOM05D004889 ORTHO05D005478 7.7e-80 302.0 493 52.1
THA.LOC104818246 Tarenaya hassleriana HOM05D004889 ORTHO05D005478 5.0e-79 299.3 487 56.1
CsaV3_1G008010 Cucumis sativus L. HOM05D004889 ORTHO05D005478 4.2e-78 296.2 487 50.9
Nn4g22998 Nelumbo nucifera HOM05D004889 ORTHO05D005478 2.1e-77 293.9 490 51.8
AUR62031228 Chenopodium quinoa HOM05D004889 ORTHO05D005478 6.1e-77 292.4 462 55.2
Potri.015G090200 Populus trichocarpa HOM05D004889 ORTHO05D005478 1.1e-75 288.1 495 52.7
MELO3C002218.2 Cucumis melo HOM05D004889 ORTHO05D005478 1.5e-75 287.7 486 53.7
Sabra12G0067700 Salix brachista HOM05D004889 ORTHO05D005478 7.0e-73 278.9 498 52.6
PGSC0003DMG400033066 Solanum tuberosum HOM05D004889 ORTHO05D005478 1.3e-71 274.6 489 51.1
Ca_21861_v3 Cicer arietinum L. HOM05D004889 ORTHO05D005478 8.5e-71 271.9 487 54.0
Manes.14G073400 Manihot esculenta HOM05D004889 ORTHO05D005478 1.1e-70 271.6 496 51.4
Potri.012G093000 Populus trichocarpa HOM05D004889 ORTHO05D005478 1.1e-70 271.6 496 51.4
FAN08G0221 Fragaria x ananassa HOM05D002295 ORTHO05D002789 1.2e-69 268.1 494 50.6
ClCG01G014310 Citrullus lanatus HOM05D004889 ORTHO05D005478 1.6e-69 267.7 502 50.2
Ah.09g233410 Amaranthus hybridus HOM05D004889 ORTHO05D005478 2.1e-69 267.3 483 51.3
Manes.06G097700 Manihot esculenta HOM05D004889 ORTHO05D005478 1.0e-68 265.0 507 49.9
TAR640G0002 Trochodendron aralioides HOM05D004889 ORTHO05D005478 2.3e-68 263.8 493 50.9
Sabra15G0112400 Salix brachista HOM05D004889 ORTHO05D005478 4.0e-68 263.1 488 52.5
Gohir.A07G065700 Gossypium hirsutum HOM05D004889 ORTHO05D005478 5.2e-68 262.7 477 52.2
Cpa.g.sc17.179 Carica papaya HOM05D004889 ORTHO05D005478 1.5e-67 261.2 497 49.5
AUR62027699 Chenopodium quinoa HOM05D004889 ORTHO05D005478 2.0e-67 260.8 454 50.0
Gorai.001G074100 Gossypium raimondii HOM05D004889 ORTHO05D005478 2.0e-67 260.8 475 53.3
Gohir.D07G070200 Gossypium hirsutum HOM05D004889 ORTHO05D005478 3.4e-67 260.0 475 52.8
GSVIVG01008085001 Vitis vinifera HOM05D004889 ORTHO05D005478 4.4e-67 259.6 495 49.3
PSO161G0045 Papaver somniferum HOM05D004889 ORTHO05D005478 1.3e-66 258.1 478 50.6
Rhsim12G0159900 Rhododendron simsii HOM05D004889 ORTHO05D005478 1.7e-66 257.7 503 46.9
CSS0046467 Camellia sinensis var. sinensis HOM05D004889 ORTHO05D005478 2.2e-66 257.3 502 48.0
CiPaw.11G036000 Carya illinoinensis HOM05D004889 ORTHO05D005478 2.2e-66 257.3 506 49.0
Ciclev10019625m.g Citrus clementina HOM05D004889 ORTHO05D005478 2.2e-66 257.3 505 49.5
CAN.G628.53 Capsicum annuum HOM05D004889 ORTHO05D005478 2.8e-66 256.9 491 50.5
FAN13G0367 Fragaria x ananassa HOM05D004889 ORTHO05D005478 3.7e-66 256.5 497 50.5
Sed0007285 Sechium edule HOM05D004889 ORTHO05D005478 3.7e-66 256.5 486 48.4
Sed0005054 Sechium edule HOM05D004889 ORTHO05D005478 3.1e-65 253.4 489 51.7
Migut.I00111 Erythranthe guttata HOM05D004889 ORTHO05D005478 5.3e-65 252.7 505 44.6
MD06G1185300 Malus domestica HOM05D004889 ORTHO05D005478 9.1e-65 251.9 502 48.6
RcHm_v2.0_Chr7g0180311 Rosa chinensis HOM05D004889 ORTHO05D005478 9.1e-65 251.9 480 49.0
Duzib068G1437 Durio zibethinus HOM05D004889 ORTHO05D005478 1.2e-64 251.5 512 43.8
TWI60G0433 Tripterygium wilfordii HOM05D004889 ORTHO05D005478 1.6e-64 251.1 480 48.3
TAR629G1437 Trochodendron aralioides HOM05D004889 ORTHO05D005478 2.7e-64 250.4 496 49.4
Dinv38643 Davidia involucrata HOM05D004889 ORTHO05D005478 7.7e-64 248.8 491 50.1
Duzib084G1322 Durio zibethinus HOM05D004889 ORTHO05D005478 1.3e-63 248.1 499 47.1
TAR039G0004 Trochodendron aralioides HOM05D004889 ORTHO05D005478 1.3e-63 248.1 496 49.2
Haze_07757 Corylus avellana HOM05D004889 ORTHO05D005478 2.9e-63 246.9 502 48.4
vmacro16573 Vaccinium macrocarpon HOM05D004889 ORTHO05D005478 5.0e-63 246.1 541 46.4
Lalb_Chr13g0298111 Lupinus albus HOM05D004889 ORTHO05D005478 2.5e-62 243.8 486 49.8
Peaxi162Scf00496g00012 Petunia axillaris HOM05D004889 ORTHO05D005478 2.5e-62 243.8 495 46.9
Thecc.03G076300 Theobroma cacao HOM05D004889 ORTHO05D005478 3.2e-62 243.4 502 48.8
FvH4_5g15820 Fragaria vesca HOM05D004889 ORTHO05D005478 4.2e-62 243.0 489 48.1
Prupe.5G184200 Prunus persica HOM05D004889 ORTHO05D005478 4.2e-62 243.0 493 46.0
EL10Ac8g20579 Beta vulgaris HOM05D004889 ORTHO05D005478 5.5e-62 242.7 498 45.4
Sopen06g027440 Solanum pennellii HOM05D004889 ORTHO05D005478 5.5e-62 242.7 480 49.8
SalBow5G2608 Salvia bowleyana HOM05D004889 ORTHO05D005478 7.2e-62 242.3 511 47.4
Solyc06g071140.3 Solanum lycopersicum HOM05D004889 ORTHO05D005478 7.2e-62 242.3 480 49.4
Glyma.05G031100 Glycine max HOM05D004889 ORTHO05D005478 1.0e-60 238.4 496 50.4
MD14G1191200 Malus domestica HOM05D004889 ORTHO05D005478 1.4e-60 238.0 492 43.5
PSO478G3716 Papaver somniferum HOM05D004889 ORTHO05D005478 1.4e-60 238.0 480 49.6
Nitab4.5_0000026g0250 Nicotiana tabacum HOM05D004889 ORTHO05D005478 4.0e-60 236.5 505 49.3
Phvul.003G194500 Phaseolus vulgaris HOM05D004889 ORTHO05D005478 8.8e-60 235.3 499 46.5
Duzib205G1395 Durio zibethinus HOM05D004889 ORTHO05D005478 1.2e-59 235.0 490 48.0
Lj5A118T73 Lonicera japonica HOM05D004889 ORTHO05D005478 5.7e-59 232.6 477 45.3
FAN18G0072 Fragaria x ananassa HOM05D002295 ORTHO05D002789 1.7e-58 231.1 512 45.9
Medtr4g107410 Medicago truncatula HOM05D004889 ORTHO05D005478 3.7e-58 229.9 493 47.3
Eucgr.B00394 Eucalyptus grandis HOM05D004889 ORTHO05D005478 2.4e-57 227.3 497 46.7
Hma1.2p1_3047F.1_g332110 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 2.4e-57 227.3 486 46.5
Psat4g054400 Pisum sativum HOM05D004889 ORTHO05D005478 3.1e-57 226.9 494 47.0
TAR622G0909 Trochodendron aralioides HOM05D004889 ORTHO05D005478 4.1e-57 226.5 490 47.3
MBI04_g18038_MAGBIO Magnolia biondii HOM05D004889 ORTHO05D005478 7.0e-57 225.7 503 46.9
Actinidia04935 Actinidia chinensis HOM05D004889 ORTHO05D005478 2.7e-56 223.8 502 46.0
ECA232G4768 Erigeron canadensis HOM05D000153 ORTHO05D000118 2.7e-56 223.8 476 46.6
Hund21165 Selenicereus undatus HOM05D004889 ORTHO05D005478 4.5e-56 223.0 497 47.7
VMungo1215G2590 Vigna mungo HOM05D004889 ORTHO05D005478 1.0e-55 221.9 494 47.6
MSTRG.23064 Avicennia marina HOM05D004889 ORTHO05D005478 1.3e-55 221.5 495 48.1
Nitab4.5_0003595g0020 Nicotiana tabacum HOM05D004889 ORTHO05D005478 1.3e-55 221.5 500 48.2
Aqoxy3G00822 Aquilegia oxysepala HOM05D004889 ORTHO05D005478 1.7e-55 221.1 484 43.4
Lalb_Chr07g0182371 Lupinus albus HOM05D004889 ORTHO05D005478 1.7e-55 221.1 480 47.5
COL.COLO4_33419 Corchorus olitorius HOM05D004889 ORTHO05D005478 5.0e-55 219.5 497 45.1
Lj4g0007492 Lotus japonicus HOM05D004889 ORTHO05D005478 8.6e-55 218.8 500 49.0
QL03p038490 Quercus lobata HOM05D004889 ORTHO05D005478 1.9e-54 217.6 522 43.9
Atru.chr9.2345 Acer truncatum HOM05D004889 ORTHO05D005478 2.5e-54 217.2 473 50.7
Sc12g0006090 Simmondsia chinensis HOM05D004889 ORTHO05D005478 9.5e-54 215.3 473 45.7
TWI81G0893 Tripterygium wilfordii HOM05D004889 ORTHO05D005478 1.2e-53 214.9 478 49.0
PGR083G1434 Punica granatum HOM05D004889 ORTHO05D005478 4.7e-53 213.0 495 47.3
HPP92_012530 Vanilla planifolia HOM05D004889 ORTHO05D005478 1.4e-52 211.5 515 41.0
arahy.Tifrunner.gnm1.ann1.78U3A7 Arachis hypogaea HOM05D004889 ORTHO05D005478 8.9e-52 208.8 503 46.9
ATR0712G167 Amborella trichopoda HOM05D004889 ORTHO05D005478 2.6e-51 207.2 494 46.4
SGA_v2.0_scaffold56G20073 Striga asiatica HOM05D004889 ORTHO05D005478 2.6e-51 207.2 509 42.2
Dinv19901 Davidia involucrata HOM05D004889 ORTHO05D005478 3.4e-51 206.8 492 45.3
arahy.Tifrunner.gnm1.ann1.9HIF7S Arachis hypogaea HOM05D004889 ORTHO05D005478 3.2e-49 200.3 493 45.6
Hma1.2p1_3047F.1_g332100 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 4.5e-48 196.4 471 45.6
Lsat_1_v5_gn_4_105560 Lactuca sativa HOM05D004889 ORTHO05D005478 5.9e-48 196.1 466 42.9
TPR.G38450 Trifolium pratense HOM05D004889 ORTHO05D005478 1.1e-46 191.8 465 46.7
SEGI_11308 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 2.5e-46 190.7 494 44.5
CDE01G0549 Ceratophyllum demersum HOM05D004889 ORTHO05D005478 8.9e-44 182.2 501 39.9
HanXRQChr09g0271391 Helianthus annuus HOM05D004889 ORTHO05D005478 1.5e-43 181.4 452 45.8
HPP92_012535 Vanilla planifolia HOM05D004889 ORTHO05D005478 1.4e-41 174.9 480 38.5
Cc04_g15980 Coffea canephora HOM05D004889 ORTHO05D005478 4.1e-41 173.3 494 44.3
DCAR_016527 Daucus carota HOM05D004889 ORTHO05D005478 2.0e-40 171.0 501 42.7
Medtr4g107420 Medicago truncatula HOM05D004889 ORTHO05D005478 6.6e-39 166.0 473 35.9
unitig_0.g784 Utricularia gibba HOM05D004889 ORTHO05D005478 7.3e-38 162.5 163 58.3
Hma1.2p1_0104F.1_g050430 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 1.2e-37 161.8 482 43.2
Nitab4.5_0003744g0020 Nicotiana tabacum HOM05D004889 ORTHO05D005478 1.8e-36 157.9 131 65.6
Os07g0192900 Oryza sativa ssp. japonica HOM05D004889 ORTHO05D005478 1.7e-34 151.4 131 65.6
SMO351G0326 Selaginella moellendorffii HOM05D004889 ORTHO05D005478 6.4e-34 149.4 444 35.1
CDE12G0348 Ceratophyllum demersum HOM05D004889 ORTHO05D005478 4.1e-33 146.7 113 70.8
BcaB02g09670 Brassica carinata HOM05D004889 ORTHO05D005478 2.1e-32 144.4 320 42.8
Nn3g17093 Nelumbo nucifera HOM05D004889 ORTHO05D005478 2.7e-32 144.1 109 72.5
Actinidia37670 Actinidia chinensis HOM05D004889 ORTHO05D005478 1.7e-31 141.4 120 65.8
Pp3c4_160 Physcomitrium patens HOM05D004889 ORTHO05D005478 1.7e-31 141.4 537 36.9
BcaB02g09669 Brassica carinata HOM05D004889 ORTHO05D005478 1.1e-30 138.7 113 70.8
Glyma.17G095700 Glycine max HOM05D004889 ORTHO05D005478 3.6e-29 133.7 233 51.1
Oeu022615.1 Olea europaea HOM05D004889 ORTHO05D005478 4.7e-29 133.3 99 69.7
Oeu022609.1 Olea europaea HOM05D004889 ORTHO05D005478 4.4e-27 126.7 225 48.0
CBR_g4762 Chara braunii HOM05D004889 ORTHO05D005478 3.7e-26 123.6 99 62.6
Actinidia37671 Actinidia chinensis HOM05D004889 ORTHO05D005478 1.1e-25 122.1 139 56.1
Mapoly0075s0020 Marchantia polymorpha HOM05D004889 ORTHO05D005478 1.1e-25 122.1 540 36.1
HanXRQChr12g0361591 Helianthus annuus HOM05D004889 ORTHO05D005478 1.4e-25 121.7 116 65.5
unitig_0.g785 Utricularia gibba HOM05D004889 ORTHO05D005478 4.1e-25 120.2 138 60.9
Zm00001eb116440 Zea mays HOM05D004889 ORTHO05D005478 4.6e-24 116.7 114 62.3
AagrBONN_evm.TU.Sc2ySwM_228.3309 Anthoceros agrestis HOM05D004889 ORTHO05D005478 1.0e-23 115.5 508 34.6
Nitab4.5_0000003g0080 Nicotiana tabacum HOM05D004889 ORTHO05D005478 1.6e-21 108.2 128 50.0
Zm00001eb302650 Zea mays HOM05D004889 ORTHO05D005478 3.8e-18 97.1 79 67.1
SEGI_30438 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 8.4e-18 95.9 104 57.7
Gohir.A11G028540 Gossypium hirsutum HOM05D004889 ORTHO05D005478 2.3e-15 87.8 76 65.8
Nitab4.5_0003744g0040 Nicotiana tabacum HOM05D004889 ORTHO05D005478 1.1e-12 79.0 114 49.1
CiPaw.12G005400 Carya illinoinensis HOM05D004889 ORTHO05D005478 4.6e-08 63.5 79 59.5
CiPaw.12G005600 Carya illinoinensis HOM05D004889 ORTHO05D005478 4.6e-08 63.5 79 59.5
SEGI_10816 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 1.0e-07 62.4 48 70.8
SEGI_30705 Sequoiadendron giganteum HOM05D010422 ORTHO05D005478 1.3e-07 62.0 86 48.8
SEGI_38811 Sequoiadendron giganteum HOM05D010422 ORTHO05D005478 1.3e-07 62.0 87 46.0
SEGI_10093 Sequoiadendron giganteum HOM05D010422 ORTHO05D005478 3.9e-07 60.5 86 46.5


User provided reference genes

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