Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR154920 Cardamine hirsuta HOM05D006297 ORTHO05D007873 2.6e-209 731.9 388 100.0
BcaB05g23510 Brassica carinata HOM05D006297 ORTHO05D007873 1.9e-143 513.1 393 74.0
Carub.0005s1301 Capsella rubella HOM05D006297 ORTHO05D007873 2.3e-141 506.1 393 74.0
AT3G46750 Arabidopsis thaliana HOM05D006297 ORTHO05D007873 6.8e-141 504.6 393 75.6
A01p26050 Brassica napus HOM05D006297 ORTHO05D007873 1.5e-135 486.9 392 71.2
AL5G25730 Arabidopsis lyrata HOM05D006297 ORTHO05D007873 1.9e-135 486.5 394 73.6
Thhalv10002567m.g Eutrema salsugineum HOM05D006297 ORTHO05D007873 3.6e-134 482.3 392 73.5
Sp5g14970 Schrenkiella parvula HOM05D006297 ORTHO05D007873 1.5e-132 476.9 395 70.9
BcaC09g49771 Brassica carinata HOM05D006297 ORTHO05D007873 4.4e-132 475.3 392 70.2
C03p70940 Brassica napus HOM05D006297 ORTHO05D007873 1.2e-129 467.2 395 70.4
BolC3t19369H Brassica oleracea HOM05D006297 ORTHO05D007873 1.2e-129 467.2 395 70.4
BcaC01g01889 Brassica carinata HOM05D006297 ORTHO05D007873 3.5e-129 465.7 395 70.1
BolC1t03251H Brassica oleracea HOM05D000026 ORTHO05D007873 4.7e-126 455.3 377 70.0
BraA01t02522Z Brassica rapa HOM05D006297 ORTHO05D007873 2.2e-123 446.4 359 71.6
A06p20810 Brassica napus HOM05D006297 ORTHO05D007873 8.3e-123 444.5 390 68.2
Aa31LG4G15680 Aethionema arabicum HOM05D006297 ORTHO05D007873 1.2e-105 387.5 410 61.7
BcaB02g10710 Brassica carinata HOM05D006297 ORTHO05D007873 5.1e-96 355.5 390 58.5
C01p33140 Brassica napus HOM05D006297 ORTHO05D007873 1.2e-89 334.3 298 66.8
THA.LOC104799430 Tarenaya hassleriana HOM05D006297 ORTHO05D007873 3.3e-71 273.1 396 48.7
CsaV3_1G034520 Cucumis sativus L. HOM05D006297 ORTHO05D007873 7.0e-37 159.1 335 38.2
MELO3C020609.2 Cucumis melo HOM05D006297 ORTHO05D007873 7.7e-36 155.6 345 38.6
Sabra09G0025100 Salix brachista HOM05D006297 ORTHO05D010418 1.7e-35 154.5 401 35.4
Ciclev10029821m.g Citrus clementina HOM05D006297 ORTHO05D007873 2.2e-35 154.1 347 38.0
Sed0017584 Sechium edule HOM05D006297 ORTHO05D007873 6.5e-35 152.5 354 37.3
Potri.009G035300 Populus trichocarpa HOM05D006297 ORTHO05D007873 2.7e-33 147.1 419 36.0
ClCG03G001300 Citrullus lanatus HOM05D006297 ORTHO05D007873 1.8e-32 144.4 341 36.7
CAN.G394.75 Capsicum annuum HOM05D006297 ORTHO05D007873 3.0e-32 143.7 359 36.2
Manes.02G129500 Manihot esculenta HOM05D006297 ORTHO05D007873 4.0e-32 143.3 440 32.0
Peaxi162Scf00481g00328 Petunia axillaris HOM05D006297 ORTHO05D007873 4.0e-32 143.3 380 33.7
Actinidia33772 Actinidia chinensis HOM05D006297 ORTHO05D007873 5.2e-32 142.9 422 34.4
Sed0011562 Sechium edule HOM05D006297 ORTHO05D007873 1.2e-31 141.7 349 34.7
CiPaw.13G089900 Carya illinoinensis HOM05D006297 ORTHO05D007873 2.0e-31 141.0 333 36.9
Nitab4.5_0006916g0050 Nicotiana tabacum HOM05D006297 ORTHO05D007873 4.4e-31 139.8 361 34.3
Hma1.2p1_0615F.1_g189690 Hydrangea macrophylla HOM05D006297 ORTHO05D007873 5.7e-31 139.4 316 37.0
CSS0020880 Camellia sinensis var. sinensis HOM05D006297 ORTHO05D007873 2.2e-30 137.5 347 35.7
PGR119G2469 Punica granatum HOM05D006297 ORTHO05D007873 4.9e-30 136.3 421 31.8
TWI79G0566 Tripterygium wilfordii HOM05D000001 ORTHO05D010418 8.3e-30 135.6 383 35.2
Potri.001G243900 Populus trichocarpa HOM05D006297 ORTHO05D007873 3.1e-29 133.7 469 32.0
Solyc06g076370.4 Solanum lycopersicum HOM05D006297 ORTHO05D007873 4.1e-29 133.3 348 34.5
Sopen06g032780 Solanum pennellii HOM05D006297 ORTHO05D007873 5.4e-29 132.9 349 35.0
Dinv34277 Davidia involucrata HOM05D006297 ORTHO05D007873 7.0e-29 132.5 354 33.6
GSVIVG01031399001 Vitis vinifera HOM05D006297 ORTHO05D007873 1.2e-28 131.7 314 36.0
MD11G1095400 Malus domestica HOM05D006297 ORTHO05D007873 4.5e-28 129.8 414 31.6
QL01p030412 Quercus lobata HOM05D006297 ORTHO05D007873 4.5e-28 129.8 439 31.9
CANSAT54G0582 Cannabis sativa HOM05D006297 ORTHO05D007873 1.0e-27 128.6 420 31.7
PGSC0003DMG400030329 Solanum tuberosum HOM05D006297 ORTHO05D007873 3.8e-27 126.7 226 38.9
MSTRG.18559 Avicennia marina HOM05D006297 ORTHO05D007873 1.5e-26 124.8 438 29.7
Migut.D00880 Erythranthe guttata HOM05D006297 ORTHO05D007873 6.1e-25 119.4 443 29.3
Aqoxy1G00878 Aquilegia oxysepala HOM05D006297 ORTHO05D007873 4.4e-23 113.2 429 30.8
Glyma.12G060000 Glycine max HOM05D006297 ORTHO05D007873 5.7e-23 112.8 348 33.6
Prupe.6G070900 Prunus persica HOM05D006297 ORTHO05D007873 3.7e-22 110.2 429 28.4
CSS0015831 Camellia sinensis var. sinensis HOM05D006297 ORTHO05D007873 1.1e-21 108.6 373 31.6
DCAR_018924 Daucus carota HOM05D006297 ORTHO05D007873 1.2e-20 105.1 344 32.0
Sc12g0001260 Simmondsia chinensis HOM05D006297 ORTHO05D007873 1.6e-20 104.8 407 29.2
Haze_24152 Corylus avellana HOM05D006297 ORTHO05D007873 4.6e-20 103.2 419 29.1
Sabra16G0148100 Salix brachista HOM05D000026 ORTHO05D000094 1.0e-19 102.1 363 31.7
DCAR_007431 Daucus carota HOM05D006297 ORTHO05D000003 2.3e-19 100.9 325 34.5
Ca_20618_v3 Cicer arietinum L. HOM05D006297 ORTHO05D007873 2.9e-19 100.5 483 27.7
Nitab4.5_0023946g0010 Nicotiana tabacum HOM05D006297 ORTHO05D007873 1.1e-18 98.6 388 28.9
Medtr4g064830 Medicago truncatula HOM05D006297 ORTHO05D007873 1.5e-18 98.2 384 29.7
Lalb_Chr22g0352441 Lupinus albus HOM05D006297 ORTHO05D007873 2.5e-18 97.4 423 30.3
Lj3g0014453 Lotus japonicus HOM05D006297 ORTHO05D007873 3.3e-18 97.1 486 27.6
Duzib168G2114 Durio zibethinus HOM05D006297 ORTHO05D007873 2.8e-17 94.0 352 31.0
Eucgr.B02311 Eucalyptus grandis HOM05D006297 ORTHO05D007873 2.8e-17 94.0 414 29.0
Rhsim13G0077500 Rhododendron simsii HOM05D000001 ORTHO05D010418 1.0e-16 92.0 409 29.8
Nn2g13426 Nelumbo nucifera HOM05D006297 ORTHO05D007873 1.8e-16 91.3 466 26.2
PSO339G0783 Papaver somniferum HOM05D006297 ORTHO05D007873 1.8e-16 91.3 160 40.0
Cc01_g13310 Coffea canephora HOM05D006297 ORTHO05D007873 3.1e-16 90.5 368 28.3
PSO513G0159 Papaver somniferum HOM05D006297 ORTHO05D007873 6.8e-16 89.4 160 39.4
Thecc.09G316300 Theobroma cacao HOM05D006297 ORTHO05D007873 1.5e-15 88.2 400 28.8
Lalb_Chr01g0003491 Lupinus albus HOM05D006297 ORTHO05D007873 3.4e-15 87.0 402 28.6
SGA_v2.0_scaffold54G19479 Striga asiatica HOM05D006297 ORTHO05D007873 4.4e-15 86.7 413 28.3
COL.COLO4_18571 Corchorus olitorius HOM05D006297 ORTHO05D007873 5.8e-15 86.3 374 29.9
Cfa011548 Carpinus fangiana HOM05D006297 ORTHO05D007873 2.2e-14 84.3 429 26.1
TPR.G23574 Trifolium pratense HOM05D006297 ORTHO05D007873 3.7e-14 83.6 404 28.5
Phvul.011G061900 Phaseolus vulgaris HOM05D006297 ORTHO05D007873 1.9e-13 81.3 362 30.4
TAR369G0304 Trochodendron aralioides HOM05D006297 ORTHO05D007873 2.4e-13 80.9 293 30.0
Psat7g210960 Pisum sativum HOM05D006297 ORTHO05D007873 3.2e-13 80.5 493 26.6
FvH4_3g36910 Fragaria vesca HOM05D006297 ORTHO05D007873 2.7e-12 77.4 572 24.1
ATR0559G346 Amborella trichopoda HOM05D006297 ORTHO05D007873 3.5e-12 77.0 296 30.1
Glyma.11G136300 Glycine max HOM05D006297 ORTHO05D007873 3.5e-12 77.0 496 26.4
Duzib170G0989 Durio zibethinus HOM05D006297 ORTHO05D007873 4.6e-12 76.6 230 30.9
VMungo1127G1804 Vigna mungo HOM05D006297 ORTHO05D007873 4.6e-12 76.6 355 30.4
Lalb_Chr03g0026471 Lupinus albus HOM05D006297 ORTHO05D007873 6.0e-12 76.3 367 27.5
RcHm_v2.0_Chr5g0066301 Rosa chinensis HOM05D006297 ORTHO05D007873 1.7e-11 74.7 538 26.0
TPR.G6873 Trifolium pratense HOM05D006297 ORTHO05D007873 1.7e-11 74.7 376 28.5
Lalb_Chr24g0397191 Lupinus albus HOM05D006297 ORTHO05D007873 1.1e-10 72.0 188 36.2
unitig_899.g15423 Utricularia gibba HOM05D006297 ORTHO05D007873 1.1e-10 72.0 316 30.7
Medtr2g097710 Medicago truncatula HOM05D006297 ORTHO05D007873 1.9e-10 71.2 235 31.1
Lsat_1_v5_gn_8_72960 Lactuca sativa HOM05D006297 ORTHO05D007873 4.3e-10 70.1 332 28.3
FAN16G1466 Fragaria x ananassa HOM05D006297 ORTHO05D007873 7.3e-10 69.3 434 25.3
Glyma.15G035500 Glycine max HOM05D006297 ORTHO05D007873 1.2e-09 68.6 453 26.7
Lj3g0003832 Lotus japonicus HOM05D006297 ORTHO05D007873 3.6e-09 67.0 464 26.9
MBI05_g35633_MAGBIO Magnolia biondii HOM05D006297 ORTHO05D007873 4.7e-09 66.6 310 27.4
Peaxi162Scf00444g00847 Petunia axillaris HOM05D004189 ORTHO05D004092 4.7e-09 66.6 137 35.8
Glyma.13G338800 Glycine max HOM05D006297 ORTHO05D007873 6.2e-09 66.2 330 26.7
Nn2g11187 Nelumbo nucifera HOM05D006297 ORTHO05D007873 6.2e-09 66.2 215 33.5
Psat5g118640 Pisum sativum HOM05D006297 ORTHO05D007873 8.1e-09 65.9 200 36.5
Ca_01304_v3 Cicer arietinum L. HOM05D006297 ORTHO05D007873 1.1e-08 65.5 178 33.7
FAN21G2693 Fragaria x ananassa HOM05D006297 ORTHO05D007873 1.8e-08 64.7 456 23.7
Phvul.L008043 Phaseolus vulgaris HOM05D006297 ORTHO05D007873 5.2e-08 63.2 330 28.2
Gohir.D07G104500 Gossypium hirsutum HOM05D006297 ORTHO05D007873 6.8e-08 62.8 370 26.5
arahy.Tifrunner.gnm1.ann1.19P32Y Arachis hypogaea HOM05D006297 ORTHO05D007873 1.5e-07 61.6 238 33.6
arahy.Tifrunner.gnm1.ann1.2MBI16 Arachis hypogaea HOM05D006297 ORTHO05D007873 1.5e-07 61.6 207 34.3
Hma1.2p1_0757F.1_g213410 Hydrangea macrophylla HOM05D006297 ORTHO05D007873 5.8e-07 59.7 119 38.7
FAN25G2608 Fragaria x ananassa HOM05D006297 ORTHO05D007873 1.3e-06 58.5 460 22.8
Oeu056256.2 Olea europaea HOM05D004189 ORTHO05D004092 1.3e-06 58.5 112 33.0
VMungo1080G0409 Vigna mungo HOM05D006297 ORTHO05D007873 3.7e-06 57.0 323 27.6


User provided reference genes

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