Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR152280 Cardamine hirsuta HOM05D007012 ORTHO05D008882 3.4e-59 231.5 120 100.0
AL5G19030 Arabidopsis lyrata HOM05D007012 ORTHO05D008882 2.5e-54 215.3 120 91.7
Sp2g17760 Schrenkiella parvula HOM05D007012 ORTHO05D008882 9.7e-54 213.4 120 90.8
Thhalv10005148m.g Eutrema salsugineum HOM05D007012 ORTHO05D008882 2.2e-53 212.2 120 90.8
BcaC06g30880 Brassica carinata HOM05D007012 ORTHO05D008882 1.8e-52 209.1 120 88.3
BcaC06g33671 Brassica carinata HOM05D007012 ORTHO05D008882 2.4e-52 208.8 120 88.3
C07p38010 Brassica napus HOM05D007012 ORTHO05D008882 2.4e-52 208.8 120 88.3
BolC7t44322H Brassica oleracea HOM05D007012 ORTHO05D008882 2.4e-52 208.8 120 88.3
A06p40130 Brassica napus HOM05D007012 ORTHO05D008882 2.6e-51 205.3 120 86.7
Aa31LG2G4090 Aethionema arabicum HOM05D007012 ORTHO05D008882 7.7e-51 203.8 120 85.8
Carub.0005s0786 Capsella rubella HOM05D007012 ORTHO05D008882 1.7e-50 202.6 120 85.0
THA.LOC104805486 Tarenaya hassleriana HOM05D007012 ORTHO05D008882 1.1e-49 199.9 117 86.3
Rhsim05G0222100 Rhododendron simsii HOM05D007012 ORTHO05D008882 6.3e-45 184.1 119 77.3
Dinv35474 Davidia involucrata HOM05D007012 ORTHO05D008882 3.1e-44 181.8 119 73.9
Atru.chr10.869 Acer truncatum HOM05D007012 ORTHO05D008882 6.9e-44 180.6 119 73.9
Cc09_g08050 Coffea canephora HOM05D007012 ORTHO05D008882 1.2e-43 179.9 119 74.8
vmacro03442 Vaccinium macrocarpon HOM05D007012 ORTHO05D008882 1.2e-43 179.9 119 74.8
QL05p061226 Quercus lobata HOM05D007012 ORTHO05D008882 2.6e-43 178.7 118 74.6
Sed0027179 Sechium edule HOM05D007012 ORTHO05D008882 2.6e-43 178.7 118 74.6
MD10G1253600 Malus domestica HOM05D007012 ORTHO05D008882 4.5e-43 177.9 117 76.1
BraA06t26928Z Brassica rapa HOM05D007012 ORTHO05D008882 5.9e-43 177.6 175 58.9
Manes.14G122800 Manihot esculenta HOM05D007012 ORTHO05D008882 5.9e-43 177.6 118 72.9
FAN25G0029 Fragaria x ananassa HOM05D007012 ORTHO05D008882 1.0e-42 176.8 117 74.4
CSS0014344 Camellia sinensis var. sinensis HOM05D007012 ORTHO05D008882 1.3e-42 176.4 119 73.1
FvH4_3g10060 Fragaria vesca HOM05D007012 ORTHO05D008882 1.7e-42 176.0 117 74.4
Hma1.2p1_0333F.1_g128270 Hydrangea macrophylla HOM05D007012 ORTHO05D008882 1.7e-42 176.0 119 73.1
Ciclev10017190m.g Citrus clementina HOM05D007012 ORTHO05D008882 2.9e-42 175.3 119 73.1
FAN21G1693 Fragaria x ananassa HOM05D007012 ORTHO05D008882 5.0e-42 174.5 117 73.5
RcHm_v2.0_Chr5g0015911 Rosa chinensis HOM05D007012 ORTHO05D008882 5.0e-42 174.5 117 72.6
CiPaw.10G085800 Carya illinoinensis HOM05D007012 ORTHO05D008882 8.5e-42 173.7 119 74.8
MELO3C023274.2 Cucumis melo HOM05D007012 ORTHO05D008882 1.1e-41 173.3 118 72.9
Gohir.A06G207700 Gossypium hirsutum HOM05D007012 ORTHO05D008882 1.1e-41 173.3 118 71.2
Potri.011G098200 Populus trichocarpa HOM05D007012 ORTHO05D008882 1.4e-41 172.9 117 74.4
Prupe.4G090000 Prunus persica HOM05D007012 ORTHO05D008882 1.4e-41 172.9 119 71.4
Solyc02g069820.3 Solanum lycopersicum HOM05D007012 ORTHO05D008882 1.4e-41 172.9 119 69.7
PGSC0003DMG400021126 Solanum tuberosum HOM05D007012 ORTHO05D008882 1.4e-41 172.9 118 70.3
CANSAT11G0200 Cannabis sativa HOM05D007012 ORTHO05D008882 1.9e-41 172.6 119 71.4
ClCG02G000770 Citrullus lanatus HOM05D007012 ORTHO05D008882 2.5e-41 172.2 118 72.0
Sopen02g018980 Solanum pennellii HOM05D007012 ORTHO05D008882 2.5e-41 172.2 124 69.4
GSVIVG01021626001 Vitis vinifera HOM05D007012 ORTHO05D008882 3.2e-41 171.8 119 71.4
SGA_v2.0_scaffold1G00245 Striga asiatica HOM05D007012 ORTHO05D008882 5.5e-41 171.0 118 71.2
CAN.G1520.3 Capsicum annuum HOM05D007012 ORTHO05D008882 7.2e-41 170.6 119 70.6
CiPaw.09G115600 Carya illinoinensis HOM05D007012 ORTHO05D008882 9.4e-41 170.2 119 73.1
Gohir.D06G213600 Gossypium hirsutum HOM05D007012 ORTHO05D008882 9.4e-41 170.2 118 70.3
Gorai.010G252500 Gossypium raimondii HOM05D007012 ORTHO05D008882 9.4e-41 170.2 118 70.3
Nitab4.5_0001225g0050 Nicotiana tabacum HOM05D007012 ORTHO05D008882 9.4e-41 170.2 119 68.9
Nitab4.5_0004615g0020 Nicotiana tabacum HOM05D007012 ORTHO05D008882 9.4e-41 170.2 124 68.5
Sabra11G0090900 Salix brachista HOM05D007012 ORTHO05D008882 9.4e-41 170.2 117 74.4
Thecc.06G001300 Theobroma cacao HOM05D007012 ORTHO05D008882 9.4e-41 170.2 119 69.7
Actinidia03306 Actinidia chinensis HOM05D007012 ORTHO05D008882 1.2e-40 169.9 119 70.6
Lsat_1_v5_gn_1_117760 Lactuca sativa HOM05D007012 ORTHO05D008882 1.6e-40 169.5 119 68.9
Peaxi162Scf00100g01517 Petunia axillaris HOM05D007012 ORTHO05D008882 1.6e-40 169.5 119 68.9
PGR031G1292 Punica granatum HOM05D007012 ORTHO05D008882 2.1e-40 169.1 119 72.3
TAR629G2694 Trochodendron aralioides HOM05D007012 ORTHO05D008882 2.1e-40 169.1 119 70.6
Eucgr.K01942 Eucalyptus grandis HOM05D007012 ORTHO05D008882 2.7e-40 168.7 119 70.6
Sabra11G0084700 Salix brachista HOM05D007012 ORTHO05D008882 2.7e-40 168.7 117 73.5
MD05G1273800 Malus domestica HOM05D007012 ORTHO05D008882 3.6e-40 168.3 117 72.6
TWI73G0699 Tripterygium wilfordii HOM05D007012 ORTHO05D008882 3.6e-40 168.3 119 70.6
Migut.M00621 Erythranthe guttata HOM05D007012 ORTHO05D008882 1.0e-39 166.8 120 68.3
ECA248G1541 Erigeron canadensis HOM05D007012 ORTHO05D008882 1.4e-39 166.4 117 72.6
AT3G29130 Arabidopsis thaliana HOM05D007012 ORTHO05D008882 3.9e-39 164.9 87 95.4
HanXRQChr15g0468791 Helianthus annuus HOM05D007012 ORTHO05D008882 3.9e-39 164.9 119 68.9
unitig_748.g7806 Utricularia gibba HOM05D007012 ORTHO05D008882 3.9e-39 164.9 118 69.5
MSTRG.7536 Avicennia marina HOM05D007012 ORTHO05D008882 6.7e-39 164.1 118 68.6
TWI09G0010 Tripterygium wilfordii HOM05D007012 ORTHO05D008882 1.1e-38 163.3 118 69.5
Migut.M01890 Erythranthe guttata HOM05D007012 ORTHO05D008882 2.6e-38 162.2 120 65.8
QL05p061674 Quercus lobata HOM05D007012 ORTHO05D008882 2.6e-38 162.2 150 58.7
Migut.M01889 Erythranthe guttata HOM05D007012 ORTHO05D008882 5.7e-38 161.0 124 65.3
Glyma.05G166500 Glycine max HOM05D007012 ORTHO05D008882 5.7e-38 161.0 118 65.3
TPR.G6804 Trifolium pratense HOM05D007012 ORTHO05D008882 5.7e-38 161.0 118 64.4
Medtr8g088380 Medicago truncatula HOM05D007012 ORTHO05D008882 9.7e-38 160.2 118 63.6
arahy.Tifrunner.gnm1.ann1.80D497 Arachis hypogaea HOM05D007012 ORTHO05D008882 2.2e-37 159.1 119 65.5
PSO675G5463 Papaver somniferum HOM05D007012 ORTHO05D008882 2.2e-37 159.1 119 66.4
HPP92_000966 Vanilla planifolia HOM05D007012 ORTHO05D008882 2.2e-37 159.1 117 65.0
AUR62005835 Chenopodium quinoa HOM05D007012 ORTHO05D008882 2.8e-37 158.7 122 68.0
AUR62032828 Chenopodium quinoa HOM05D007012 ORTHO05D008882 2.8e-37 158.7 122 68.0
arahy.Tifrunner.gnm1.ann1.HAVC5G Arachis hypogaea HOM05D007012 ORTHO05D008882 3.7e-37 158.3 117 65.8
Lj4g0006275 Lotus japonicus HOM05D007012 ORTHO05D008882 4.8e-37 157.9 117 63.2
Psat7g066160 Pisum sativum HOM05D007012 ORTHO05D008882 8.2e-37 157.1 118 62.7
PSO541G1654 Papaver somniferum HOM05D007012 ORTHO05D008882 1.4e-36 156.4 119 64.7
Ah.02g129420 Amaranthus hybridus HOM05D007012 ORTHO05D008882 2.4e-36 155.6 114 70.2
Lalb_Chr12g0204651 Lupinus albus HOM05D007012 ORTHO05D008882 3.1e-36 155.2 119 62.2
Sc24g0001360 Simmondsia chinensis HOM05D007012 ORTHO05D008882 1.5e-35 152.9 122 64.8
EL10Ac6g13254 Beta vulgaris HOM05D007012 ORTHO05D008882 2.0e-35 152.5 114 67.5
Hund20768 Selenicereus undatus HOM05D007012 ORTHO05D008882 2.6e-35 152.1 115 67.0
SalBow8G4607 Salvia bowleyana HOM05D007012 ORTHO05D008882 1.3e-34 149.8 134 57.5
Sed0002894 Sechium edule HOM05D007012 ORTHO05D008882 1.3e-34 149.8 101 71.3
Phvul.002G246900 Phaseolus vulgaris HOM05D007012 ORTHO05D008882 3.8e-34 148.3 119 61.3
CDE08G0050 Ceratophyllum demersum HOM05D007012 ORTHO05D008882 9.4e-33 143.7 102 65.7
Zm00001eb218740 Zea mays HOM05D007012 ORTHO05D008882 1.4e-31 139.8 111 57.7
Migut.M00618 Erythranthe guttata HOM05D007012 ORTHO05D008882 1.8e-31 139.4 108 63.0
Os03g0640400 Oryza sativa ssp. japonica HOM05D007012 ORTHO05D008882 1.8e-31 139.4 111 59.5
SEGI_30962 Sequoiadendron giganteum HOM05D007012 ORTHO05D008882 4.8e-29 131.3 115 56.5
FAN11G2674 Fragaria x ananassa HOM05D007012 ORTHO05D008882 9.1e-28 127.1 85 75.3
FAN16G3160 Fragaria x ananassa HOM05D007012 ORTHO05D008882 9.1e-28 127.1 85 75.3
Cfa000822 Carpinus fangiana HOM05D007012 ORTHO05D008882 1.6e-27 126.3 85 74.1
Hma1.2p1_0333F.1_g128260 Hydrangea macrophylla HOM05D007012 ORTHO05D008882 8.5e-26 120.6 84 70.2
CsaV3_2G017990 Cucumis sativus L. HOM05D007012 ORTHO05D008882 2.5e-25 119.0 84 70.2
CDE08G0396 Ceratophyllum demersum HOM05D007012 ORTHO05D008882 7.2e-25 117.5 94 59.6
Oeu034103.1 Olea europaea HOM05D007012 ORTHO05D008882 1.6e-24 116.3 85 65.9
Pp3c17_18250 Physcomitrium patens HOM05D007012 ORTHO05D008882 4.7e-24 114.8 117 53.0
Haze_05817 Corylus avellana HOM05D007012 ORTHO05D008882 8.0e-24 114.0 88 65.9
AagrBONN_evm.TU.Sc2ySwM_368.2441 Anthoceros agrestis HOM05D007012 ORTHO05D008882 1.0e-23 113.6 113 51.3
Aqoxy1G01570 Aquilegia oxysepala HOM05D007012 ORTHO05D008882 1.8e-23 112.8 88 62.5
Mapoly0001s0437 Marchantia polymorpha HOM05D007012 ORTHO05D008882 5.2e-23 111.3 109 48.6
SEGI_05812 Sequoiadendron giganteum HOM05D007012 ORTHO05D008882 2.6e-22 109.0 102 53.9
VMungo0251G0322 Vigna mungo HOM05D007012 ORTHO05D008882 1.3e-21 106.7 85 60.0
CBR_g52649 Chara braunii HOM05D007012 ORTHO05D008882 1.7e-21 106.3 106 48.1
AagrBONN_evm.TU.Sc2ySwM_117.2140 Anthoceros agrestis HOM05D007012 ORTHO05D008882 1.6e-19 99.8 85 56.5
Migut.M00617 Erythranthe guttata HOM05D007012 ORTHO05D008882 4.5e-19 98.2 117 45.3
ATR0165G051 Amborella trichopoda HOM05D007012 ORTHO05D008882 1.0e-18 97.1 81 58.0
Glyma.08G124500 Glycine max HOM05D007012 ORTHO05D008882 3.4e-14 82.0 54 66.7
Nn3g20226 Nelumbo nucifera HOM05D007012 ORTHO05D008882 1.8e-07 59.7 124 36.3
THA.LOC104805965 Tarenaya hassleriana HOM05D000199 ORTHO05D000550 8.9e-07 57.4 32 87.5


User provided reference genes

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