Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR151910 Cardamine hirsuta HOM05D007472 ORTHO05D009477 0.0e+00 1498.8 783 100.0
AL5G18670 Arabidopsis lyrata HOM05D007472 ORTHO05D009477 2.1e-311 1072.0 789 72.4
Carub.0005s0743 Capsella rubella HOM05D007472 ORTHO05D009477 1.5e-301 1039.3 784 70.4
Sp2g17510 Schrenkiella parvula HOM05D007472 ORTHO05D009477 2.9e-284 981.9 808 67.0
BolC2t11563H Brassica oleracea HOM05D007472 ORTHO05D009477 3.5e-277 958.4 839 63.1
BcaC03g17537 Brassica carinata HOM05D007472 ORTHO05D009477 4.5e-277 958.0 839 63.1
C02p55120 Brassica napus HOM05D007472 ORTHO05D009477 3.8e-276 954.9 834 63.3
BraA02t08613Z Brassica rapa HOM05D007472 ORTHO05D009477 2.3e-273 945.7 828 62.8
A02p36140 Brassica napus HOM05D007472 ORTHO05D009477 7.0e-270 934.1 852 61.0
BcaB07g30111 Brassica carinata HOM05D007472 ORTHO05D009477 1.2e-269 933.3 832 61.7
Thhalv10003677m.g Eutrema salsugineum HOM05D007472 ORTHO05D009477 4.4e-264 914.8 837 61.8
Aa31LG2G4320 Aethionema arabicum HOM05D007472 ORTHO05D009477 6.4e-247 857.8 776 61.5
THA.LOC104805462 Tarenaya hassleriana HOM05D007472 ORTHO05D009477 4.8e-202 708.8 951 47.1
AT3G28880 Arabidopsis thaliana HOM05D007472 ORTHO05D009477 2.8e-178 629.8 521 64.5
Thhalv10009510m.g Eutrema salsugineum HOM05D007472 ORTHO05D009477 3.4e-147 526.6 433 68.1
Cfa007540 Carpinus fangiana HOM05D007472 ORTHO05D009477 6.6e-135 485.7 994 34.3
Gohir.D07G211400 Gossypium hirsutum HOM05D007472 ORTHO05D009477 2.5e-134 483.8 969 34.2
Gohir.A07G205200 Gossypium hirsutum HOM05D007472 ORTHO05D009477 3.3e-134 483.4 969 34.1
Gorai.001G238800 Gossypium raimondii HOM05D007472 ORTHO05D009477 5.6e-134 482.6 969 34.1
Thecc.04G080300 Theobroma cacao HOM05D007472 ORTHO05D009477 1.4e-132 478.0 1022 33.2
Manes.01G090001 Manihot esculenta HOM05D007472 ORTHO05D009477 4.1e-129 466.5 1015 33.3
Haze_14546 Corylus avellana HOM05D007472 ORTHO05D009477 9.2e-129 465.3 1002 33.5
PGR142G1798 Punica granatum HOM05D007472 ORTHO05D009477 3.4e-123 446.8 946 32.6
QL04p014916 Quercus lobata HOM05D007472 ORTHO05D009477 9.9e-123 445.3 992 33.3
TWI60G0556 Tripterygium wilfordii HOM05D007472 ORTHO05D009477 2.2e-122 444.1 953 32.9
QL04p014554 Quercus lobata HOM05D007472 ORTHO05D009477 1.4e-121 441.4 992 33.1
Prupe.3G268600 Prunus persica HOM05D007472 ORTHO05D009477 2.5e-118 430.6 1036 32.3
MD09G1050300 Malus domestica HOM05D007472 ORTHO05D009477 5.8e-115 419.5 1032 32.4
Potri.004G129100 Populus trichocarpa HOM05D007472 ORTHO05D009477 1.0e-111 408.7 1011 31.6
SHI06832 Sapria himalayana HOM05D007472 ORTHO05D000001 4.7e-109 399.8 1033 30.9
RcHm_v2.0_Chr2g0168671 Rosa chinensis HOM05D007472 ORTHO05D009477 1.7e-106 391.3 1059 30.6
FAN02G3469 Fragaria x ananassa HOM05D007472 ORTHO05D009477 1.9e-105 387.9 1041 30.6
FvH4_6g48800 Fragaria vesca HOM05D007472 ORTHO05D009477 5.4e-105 386.3 1048 30.8
FAN05G4432 Fragaria x ananassa HOM05D007472 ORTHO05D009477 4.6e-104 383.3 1051 30.2
AUR62039817 Chenopodium quinoa HOM05D007472 ORTHO05D009477 7.8e-104 382.5 997 29.7
FAN09G3065 Fragaria x ananassa HOM05D007472 ORTHO05D009477 3.9e-103 380.2 1045 30.7
CANSAT64G0327 Cannabis sativa HOM05D007472 ORTHO05D009477 1.5e-102 378.3 832 32.1
Atru.chr8.142 Acer truncatum HOM05D007472 ORTHO05D009477 1.6e-101 374.8 926 31.6
EL10Ac2g02974 Beta vulgaris HOM05D007472 ORTHO05D009477 6.9e-100 369.4 1034 29.1
Ciclev10011009m.g Citrus clementina HOM05D007472 ORTHO05D009477 2.6e-99 367.5 951 30.3
GSVIVG01011394001 Vitis vinifera HOM05D007472 ORTHO05D009477 1.2e-91 342.0 781 32.4
TAR622G0243 Trochodendron aralioides HOM05D007472 ORTHO05D009477 4.3e-86 323.6 454 43.6
FvH4_6g49850 Fragaria vesca HOM05D007472 ORTHO05D009477 7.4e-86 322.8 475 44.6
Duzib147G0661 Durio zibethinus HOM05D007472 ORTHO05D009477 1.0e-82 312.4 873 30.0
FvH4_1g02370 Fragaria vesca HOM05D007472 ORTHO05D009477 6.5e-82 309.7 441 44.2
FAN14G2920 Fragaria x ananassa HOM05D007472 ORTHO05D009477 1.1e-81 308.9 707 34.1
CiPaw.03G027700 Carya illinoinensis HOM05D007472 ORTHO05D009477 2.5e-81 307.8 777 31.9
Zm00001eb029370 Zea mays HOM05D007472 ORTHO05D009477 3.0e-79 300.8 697 32.4
MBI14_g12118_MAGBIO Magnolia biondii HOM05D007472 ORTHO05D009477 8.7e-79 299.3 985 27.1
Os12g0572800 Oryza sativa ssp. japonica HOM05D007472 ORTHO05D009477 6.3e-77 293.1 707 32.5
ATR0037G017 Amborella trichopoda HOM05D007472 ORTHO05D009477 5.0e-74 283.5 709 30.6
BolC8t51634H Brassica oleracea HOM05D007472 ORTHO05D009477 8.5e-74 282.7 248 65.3
BcaC02g10318 Brassica carinata HOM05D001675 ORTHO05D001808 2.7e-72 277.7 248 62.9
AUR62034398 Chenopodium quinoa HOM05D007472 ORTHO05D009477 2.7e-72 277.7 864 27.5
Aqoxy1G01920 Aquilegia oxysepala HOM05D007472 ORTHO05D009477 2.3e-71 274.6 954 27.1
Cpa.g.sc1057.1 Carica papaya HOM05D007472 ORTHO05D009477 1.7e-66 258.5 720 27.8
Aqoxy1G01781 Aquilegia oxysepala HOM05D007472 ORTHO05D009477 1.4e-63 248.8 807 29.6
SEGI_07251 Sequoiadendron giganteum HOM05D007472 ORTHO05D009477 3.3e-62 244.2 797 27.5
AT3G28875 Arabidopsis thaliana HOM05D007472 ORTHO05D009477 4.7e-56 223.8 168 67.9
TAR622G0195 Trochodendron aralioides HOM05D007472 ORTHO05D009477 2.4e-44 184.9 319 35.1
BcaC07g41068 Brassica carinata HOM05D007472 ORTHO05D009477 2.0e-43 181.8 158 63.9
C08p40690 Brassica napus HOM05D007472 ORTHO05D009477 3.5e-43 181.0 144 69.4
Os12g0587100 Oryza sativa ssp. japonica HOM05D007472 ORTHO05D009477 5.0e-42 177.2 416 32.7
Nn3g17438 Nelumbo nucifera HOM05D007472 ORTHO05D009477 6.5e-42 176.8 289 37.4
Hund13216 Selenicereus undatus HOM05D007472 ORTHO05D009477 4.8e-37 160.6 130 61.5
CDE04G1619 Ceratophyllum demersum HOM05D007472 ORTHO05D009477 4.1e-36 157.5 638 25.4
RcHm_v2.0_Chr2g0170061 Rosa chinensis HOM05D007472 ORTHO05D009477 2.0e-35 155.2 286 40.2
EL10Ac1g01538 Beta vulgaris HOM05D007472 ORTHO05D009477 3.8e-34 151.0 140 55.0
FAN14G0482 Fragaria x ananassa HOM05D007472 ORTHO05D009477 8.9e-31 139.8 297 37.4
RcHm_v2.0_Chr6g0246231 Rosa chinensis HOM05D007472 ORTHO05D009477 1.7e-29 135.6 164 44.5
CBR_g32589 Chara braunii HOM05D007472 ORTHO05D009477 1.5e-25 122.5 546 24.9
SMO117G0184 Selaginella moellendorffii HOM05D007472 ORTHO05D009477 2.8e-24 118.2 488 25.4
Mapoly0003s0158 Marchantia polymorpha HOM05D007472 ORTHO05D009477 1.0e-23 116.3 502 24.1
Pp3c7_7390 Physcomitrium patens HOM05D007472 ORTHO05D009477 4.4e-22 110.9 176 36.4
Pp3c11_18760 Physcomitrium patens HOM05D007472 ORTHO05D009477 1.7e-21 109.0 267 29.6
SEGI_35223 Sequoiadendron giganteum HOM05D007472 ORTHO05D009477 2.9e-21 108.2 154 39.0
AagrBONN_evm.TU.Sc2ySwM_344.3065 Anthoceros agrestis HOM05D007472 ORTHO05D009477 4.9e-21 107.5 139 41.0
EL10Ac2g03267 Beta vulgaris HOM05D007472 ORTHO05D009477 1.4e-20 105.9 86 59.3
Mapoly0010s0140 Marchantia polymorpha HOM05D007472 ORTHO05D009477 9.2e-20 103.2 137 42.3
Mapoly0010s0146 Marchantia polymorpha HOM05D007472 ORTHO05D009477 1.6e-19 102.4 145 42.8
Pp3c3_9890 Physcomitrium patens HOM05D007472 ORTHO05D009477 4.6e-19 100.9 90 53.3
SMO244G0049 Selaginella moellendorffii HOM05D007472 ORTHO05D009477 6.0e-19 100.5 121 43.8
SMO244G0018 Selaginella moellendorffii HOM05D007472 ORTHO05D009477 1.3e-18 99.4 107 47.7
Mapoly0163s0008 Marchantia polymorpha HOM05D007472 ORTHO05D009477 1.9e-17 95.5 155 35.5
Mapoly0213s0013 Marchantia polymorpha HOM05D007472 ORTHO05D009477 2.1e-16 92.0 121 40.5
RcHm_v2.0_Chr2g0170071 Rosa chinensis HOM05D007472 ORTHO05D009477 2.1e-16 92.0 87 48.3
RcHm_v2.0_Chr6g0246241 Rosa chinensis HOM05D007472 ORTHO05D009477 6.2e-16 90.5 129 41.1
FvH4_6g49030 Fragaria vesca HOM05D007472 ORTHO05D009477 4.0e-15 87.8 318 26.1
BolC4t24572H Brassica oleracea HOM05D007472 ORTHO05D009477 3.7e-13 81.3 69 65.2
AUR62034397 Chenopodium quinoa HOM05D007472 ORTHO05D009477 6.4e-13 80.5 103 40.8
Aqoxy1G01780 Aquilegia oxysepala HOM05D007472 ORTHO05D009477 4.1e-12 77.8 135 35.6
Dinv12600 Davidia involucrata HOM05D008239 ORTHO05D009800 7.0e-12 77.0 209 32.1
C08p40680 Brassica napus HOM05D007472 ORTHO05D009477 1.6e-11 75.9 52 67.3
CANSAT35G1746 Cannabis sativa HOM05D007472 ORTHO05D009477 2.7e-11 75.1 95 44.2
Rhsim03G0008000 Rhododendron simsii HOM05D008239 ORTHO05D009800 2.7e-11 75.1 174 34.5
Dinv25412 Davidia involucrata HOM05D008239 ORTHO05D009800 2.3e-10 72.0 271 28.8
Dinv38087 Davidia involucrata HOM05D008239 ORTHO05D009800 3.0e-10 71.6 190 28.9
Dinv30486 Davidia involucrata HOM05D010983 ORTHO05D009800 3.9e-10 71.2 281 22.8
Dinv12606 Davidia involucrata HOM05D008239 ORTHO05D009800 8.6e-10 70.1 199 32.7
Dinv23281 Davidia involucrata HOM05D008239 ORTHO05D009800 2.1e-08 65.5 287 25.1
Rhsim06G0231700 Rhododendron simsii HOM05D008239 ORTHO05D009800 1.1e-07 63.2 219 28.8
Dinv27632 Davidia involucrata HOM05D008239 ORTHO05D009800 4.0e-07 61.2 248 28.2
FAN09G4693 Fragaria x ananassa HOM05D007472 ORTHO05D009477 4.4e-06 57.8 126 34.1
PRCOL_00002314 Prasinoderma coloniale HOM05D056161 ORTHO05D044243 4.4e-06 57.8 107 35.5


User provided reference genes

Program Settings