Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR151120 Cardamine hirsuta HOM05D006252 ORTHO05D007909 1.4e-102 376.3 198 100.0
AT3G44890 Arabidopsis thaliana HOM05D006252 ORTHO05D007909 1.1e-97 360.1 198 93.4
AL5G23350 Arabidopsis lyrata HOM05D006252 ORTHO05D007909 2.9e-95 352.1 198 91.4
Carub.0005s1063 Capsella rubella HOM05D006252 ORTHO05D007909 1.4e-94 349.7 198 90.4
Aa31LG4G14200 Aethionema arabicum HOM05D006252 ORTHO05D007909 6.6e-92 340.9 198 89.9
Sp5g16320 Schrenkiella parvula HOM05D006252 ORTHO05D007909 2.8e-90 335.5 198 89.9
Thhalv10002672m.g Eutrema salsugineum HOM05D006252 ORTHO05D007909 1.2e-88 330.1 198 88.4
BcaB05g23061 Brassica carinata HOM05D006252 ORTHO05D007909 4.6e-85 318.2 196 85.2
BcaC09g49661 Brassica carinata HOM05D006252 ORTHO05D007909 4.6e-85 318.2 196 85.2
C01p34110 Brassica napus HOM05D006252 ORTHO05D007909 4.6e-85 318.2 196 85.2
BolC1t03381H Brassica oleracea HOM05D006252 ORTHO05D007909 4.6e-85 318.2 196 85.2
A01p26720 Brassica napus HOM05D006252 ORTHO05D007909 2.3e-84 315.8 196 84.7
BraA01t02602Z Brassica rapa HOM05D006252 ORTHO05D007909 2.3e-84 315.8 196 84.7
THA.LOC104810882 Tarenaya hassleriana HOM05D006252 ORTHO05D007909 7.1e-78 294.3 198 78.3
QL01p014977 Quercus lobata HOM05D006252 ORTHO05D007909 1.2e-77 293.5 195 79.0
PSO063G5667 Papaver somniferum HOM05D006252 ORTHO05D007909 2.3e-76 289.3 197 77.2
Manes.11G152500 Manihot esculenta HOM05D006252 ORTHO05D007909 5.1e-76 288.1 199 76.4
CiPaw.13G122300 Carya illinoinensis HOM05D006252 ORTHO05D007909 6.6e-76 287.7 196 77.0
PSO339G3106 Papaver somniferum HOM05D006252 ORTHO05D007909 6.6e-76 287.7 197 77.2
TAR633G0073 Trochodendron aralioides HOM05D006252 ORTHO05D007909 1.9e-75 286.2 196 77.0
Cpa.g.sc47.1 Carica papaya HOM05D006252 ORTHO05D007909 4.3e-75 285.0 198 75.8
Sabra09G0002100 Salix brachista HOM05D006252 ORTHO05D007909 7.3e-75 284.3 196 75.0
Thecc.09G298300 Theobroma cacao HOM05D006252 ORTHO05D007909 7.3e-75 284.3 198 74.7
Atru.chr3.3505 Acer truncatum HOM05D006252 ORTHO05D007909 1.6e-74 283.1 197 75.6
CSS0004051 Camellia sinensis var. sinensis HOM05D006252 ORTHO05D007909 8.1e-74 280.8 198 75.8
CSS0044427 Camellia sinensis var. sinensis HOM05D006252 ORTHO05D007909 8.1e-74 280.8 198 75.8
Nn6g35212 Nelumbo nucifera HOM05D006252 ORTHO05D007909 1.1e-73 280.4 199 75.9
COL.COLO4_19198 Corchorus olitorius HOM05D006252 ORTHO05D007909 1.4e-73 280.0 198 73.2
FAN16G0084 Fragaria x ananassa HOM05D006252 ORTHO05D007909 3.1e-73 278.9 196 74.5
FAN21G1285 Fragaria x ananassa HOM05D006252 ORTHO05D007909 3.1e-73 278.9 196 74.5
Gorai.009G090100 Gossypium raimondii HOM05D006252 ORTHO05D007909 3.1e-73 278.9 198 73.7
Ciclev10029219m.g Citrus clementina HOM05D006252 ORTHO05D007909 4.0e-73 278.5 197 73.6
FvH4_3g30600 Fragaria vesca HOM05D006252 ORTHO05D007909 5.3e-73 278.1 196 74.5
FAN11G0619 Fragaria x ananassa HOM05D006252 ORTHO05D007909 5.3e-73 278.1 196 74.5
Potri.004G217000 Populus trichocarpa HOM05D006252 ORTHO05D007909 5.3e-73 278.1 195 73.8
PGR102G1698 Punica granatum HOM05D006252 ORTHO05D007909 5.3e-73 278.1 196 73.0
FAN25G2218 Fragaria x ananassa HOM05D006252 ORTHO05D007909 6.9e-73 277.7 196 74.0
HanXRQChr02g0055341 Helianthus annuus HOM05D006252 ORTHO05D007909 6.9e-73 277.7 199 75.4
Glyma.12G081500 Glycine max HOM05D006252 ORTHO05D007909 9.0e-73 277.3 191 76.4
Gohir.D05G088000 Gossypium hirsutum HOM05D006252 ORTHO05D007909 9.0e-73 277.3 198 73.2
Sabra04G0147700 Salix brachista HOM05D006252 ORTHO05D007909 1.5e-72 276.6 186 74.7
Gohir.A05G086700 Gossypium hirsutum HOM05D006252 ORTHO05D007909 2.0e-72 276.2 198 72.7
Hma1.2p1_0051F.1_g029510 Hydrangea macrophylla HOM05D006252 ORTHO05D007909 3.4e-72 275.4 198 73.2
Glyma.11G192500 Glycine max HOM05D006252 ORTHO05D007909 4.5e-72 275.0 192 76.6
VMungo1127G0830 Vigna mungo HOM05D006252 ORTHO05D007909 4.5e-72 275.0 190 76.3
Nitab4.5_0005665g0020 Nicotiana tabacum HOM05D006252 ORTHO05D007909 5.8e-72 274.6 190 75.3
Peaxi162Scf00983g00015 Petunia axillaris HOM05D006252 ORTHO05D007909 9.9e-72 273.9 190 76.3
MD03G1128600 Malus domestica HOM05D006252 ORTHO05D007909 1.7e-71 273.1 196 73.0
Phvul.011G086500 Phaseolus vulgaris HOM05D006252 ORTHO05D007909 1.7e-71 273.1 190 75.3
MD11G1148800 Malus domestica HOM05D006252 ORTHO05D007909 4.9e-71 271.6 196 73.0
arahy.Tifrunner.gnm1.ann1.Q498P0 Arachis hypogaea HOM05D006252 ORTHO05D007909 6.4e-71 271.2 191 74.3
arahy.Tifrunner.gnm1.ann1.4A8W5C Arachis hypogaea HOM05D006252 ORTHO05D007909 8.4e-71 270.8 191 74.3
RcHm_v2.0_Chr5g0056671 Rosa chinensis HOM05D006252 ORTHO05D007909 1.4e-70 270.0 196 72.4
Actinidia07187 Actinidia chinensis HOM05D006252 ORTHO05D007909 1.9e-70 269.6 196 73.0
Cfa010288 Carpinus fangiana HOM05D006252 ORTHO05D007909 3.2e-70 268.9 196 71.9
Sed0008981 Sechium edule HOM05D006252 ORTHO05D007909 5.5e-70 268.1 200 73.0
Lj2A1006G34 Lonicera japonica HOM05D006252 ORTHO05D007909 7.1e-70 267.7 199 70.4
MELO3C004995.2 Cucumis melo HOM05D006252 ORTHO05D007909 1.2e-69 266.9 200 74.0
TWI79G1340 Tripterygium wilfordii HOM05D006252 ORTHO05D007909 1.2e-69 266.9 198 70.2
CDE08G0788 Ceratophyllum demersum HOM05D006252 ORTHO05D007909 1.6e-69 266.5 193 71.5
Cc01_g10250 Coffea canephora HOM05D006252 ORTHO05D007909 1.6e-69 266.5 199 73.4
CsaV3_1G013140 Cucumis sativus L. HOM05D006252 ORTHO05D007909 1.6e-69 266.5 200 73.5
Cc08_g04460 Coffea canephora HOM05D006252 ORTHO05D007909 2.1e-69 266.2 199 72.9
Solyc11g066410.2 Solanum lycopersicum HOM05D006252 ORTHO05D007909 2.1e-69 266.2 191 71.2
CDE02G0854 Ceratophyllum demersum HOM05D006252 ORTHO05D007909 2.7e-69 265.8 169 77.5
ClCG03G002460 Citrullus lanatus HOM05D006252 ORTHO05D007909 2.7e-69 265.8 200 73.0
PGSC0003DMG400000456 Solanum tuberosum HOM05D006252 ORTHO05D007909 2.7e-69 265.8 191 71.2
AUR62014977 Chenopodium quinoa HOM05D006252 ORTHO05D007909 4.6e-69 265.0 200 71.0
Migut.D02295 Erythranthe guttata HOM05D006252 ORTHO05D007909 7.9e-69 264.2 201 73.1
EL10Ac9g22626 Beta vulgaris HOM05D006252 ORTHO05D007909 1.0e-68 263.8 200 72.0
Lsat_1_v5_gn_6_43381 Lactuca sativa HOM05D006252 ORTHO05D007909 1.0e-68 263.8 192 71.9
Sopen11g026160 Solanum pennellii HOM05D006252 ORTHO05D007909 1.0e-68 263.8 192 71.9
AUR62029150 Chenopodium quinoa HOM05D006252 ORTHO05D007909 1.3e-68 263.5 200 70.5
Prupe.6G113200 Prunus persica HOM05D006252 ORTHO05D007909 1.3e-68 263.5 196 71.9
ECA233G2302 Erigeron canadensis HOM05D006252 ORTHO05D007909 1.8e-68 263.1 207 70.0
GSVIVG01031460001 Vitis vinifera HOM05D006252 ORTHO05D007909 5.1e-68 261.5 161 80.7
MSTRG.18705 Avicennia marina HOM05D006252 ORTHO05D007909 8.7e-68 260.8 201 70.6
Nitab4.5_0000173g0140 Nicotiana tabacum HOM05D006252 ORTHO05D007909 8.7e-68 260.8 182 74.7
Aqoxy1G01090 Aquilegia oxysepala HOM05D006252 ORTHO05D007909 1.1e-67 260.4 198 69.2
TWI75G0936 Tripterygium wilfordii HOM05D006252 ORTHO05D007909 1.9e-67 259.6 180 74.4
Ca_19323_v3 Cicer arietinum L. HOM05D006252 ORTHO05D007909 7.4e-67 257.7 200 68.5
ATR0043G002 Amborella trichopoda HOM05D006252 ORTHO05D007909 9.6e-67 257.3 159 81.8
Lalb_Chr03g0027721 Lupinus albus HOM05D006252 ORTHO05D007909 2.8e-66 255.8 190 70.5
Medtr4g057210 Medicago truncatula HOM05D006252 ORTHO05D007909 3.7e-66 255.4 198 70.2
Psat7g223760 Pisum sativum HOM05D006252 ORTHO05D007909 4.8e-66 255.0 198 69.2
SalBow6G6884 Salvia bowleyana HOM05D006252 ORTHO05D007909 6.2e-66 254.6 217 67.3
unitig_746.g26615 Utricularia gibba HOM05D006252 ORTHO05D007909 8.1e-66 254.2 161 80.7
Lalb_Chr19g0136901 Lupinus albus HOM05D006252 ORTHO05D007909 6.9e-65 251.1 196 67.9
Hund01525 Selenicereus undatus HOM05D006252 ORTHO05D007909 6.9e-65 251.1 189 73.5
Lj3g0021853 Lotus japonicus HOM05D006252 ORTHO05D007909 9.0e-65 250.8 190 68.9
vmacro14388 Vaccinium macrocarpon HOM05D006252 ORTHO05D007909 9.0e-65 250.8 196 65.8
HPP92_003365 Vanilla planifolia HOM05D006252 ORTHO05D007909 1.2e-64 250.4 162 73.5
MBI02_g05768_MAGBIO Magnolia biondii HOM05D006252 ORTHO05D007909 4.5e-64 248.4 148 82.4
SGA_v2.0_scaffold277G46698 Striga asiatica HOM05D006252 ORTHO05D007909 4.5e-64 248.4 199 67.3
TPR.G36832 Trifolium pratense HOM05D006252 ORTHO05D007909 2.9e-63 245.7 198 66.2
Rhsim01G0210400 Rhododendron simsii HOM05D006252 ORTHO05D007909 2.1e-61 239.6 196 62.8
Zm00001eb258190 Zea mays HOM05D006252 ORTHO05D007909 4.3e-59 231.9 175 65.7
Dinv16227 Davidia involucrata HOM05D006252 ORTHO05D007909 4.1e-57 225.3 148 79.1
Sc21g0000330 Simmondsia chinensis HOM05D006252 ORTHO05D007909 1.7e-47 193.4 141 73.8
Mapoly0005s0034 Marchantia polymorpha HOM05D006252 ORTHO05D007909 1.4e-46 190.3 207 50.2
AagrBONN_evm.TU.Sc2ySwM_362.2261 Anthoceros agrestis HOM05D006252 ORTHO05D007909 3.2e-46 189.1 159 56.0
Haze_24363 Corylus avellana HOM05D006252 ORTHO05D007909 2.0e-40 169.9 105 80.0
Pp3c1_5300 Physcomitrium patens HOM05D006252 ORTHO05D007909 3.4e-40 169.1 156 53.8
Pp3c1_5320 Physcomitrium patens HOM05D006252 ORTHO05D007909 3.4e-40 169.1 156 53.8
SMO118G0111 Selaginella moellendorffii HOM05D006252 ORTHO05D007909 5.9e-40 168.3 159 54.1
Pp3c2_34110 Physcomitrium patens HOM05D006252 ORTHO05D007909 7.7e-40 167.9 156 53.2
Pp3c2_34120 Physcomitrium patens HOM05D006252 ORTHO05D007909 7.7e-40 167.9 156 53.2
Thhalv10023194m.g Eutrema salsugineum HOM05D006252 ORTHO05D007909 1.0e-39 167.5 102 87.3
CBR_g36656 Chara braunii HOM05D006252 ORTHO05D007909 2.9e-39 166.0 156 52.6
arahy.Tifrunner.gnm1.ann1.151HRH Arachis hypogaea HOM05D006252 ORTHO05D007909 5.0e-39 165.2 103 80.6
Oeu007732.1 Olea europaea HOM05D006252 ORTHO05D007909 7.2e-38 161.4 94 87.2
arahy.Tifrunner.gnm1.ann1.RBN82M Arachis hypogaea HOM05D006252 ORTHO05D007909 8.8e-36 154.5 103 76.7
Actinidia24149 Actinidia chinensis HOM05D006252 ORTHO05D007909 3.2e-30 136.0 114 64.9
arahy.Tifrunner.gnm1.ann1.EI3IVH Arachis hypogaea HOM05D006252 ORTHO05D007909 4.2e-30 135.6 90 77.8
SEGI_37172 Sequoiadendron giganteum HOM05D006252 ORTHO05D007909 2.2e-26 123.2 88 68.2
arahy.Tifrunner.gnm1.ann1.8D185T Arachis hypogaea HOM05D006252 ORTHO05D005826 3.5e-24 115.9 71 80.3
Haze_24362 Corylus avellana HOM05D006252 ORTHO05D007909 1.2e-21 107.5 92 63.0
Cre12.g556050 Chlamydomonas reinhardtii HOM05D006252 ORTHO05D007909 5.2e-20 102.1 147 35.4
MCO03G269 Micromonas commoda HOM05D006252 ORTHO05D007909 2.6e-19 99.8 161 34.8
arahy.Tifrunner.gnm1.ann1.KIT0HG Arachis hypogaea HOM05D006252 ORTHO05D007909 3.7e-18 95.9 88 59.1
Oeu007731.1 Olea europaea HOM05D006252 ORTHO05D007909 7.0e-17 91.7 99 55.6
PRCOL_00001763 Prasinoderma coloniale HOM05D006252 ORTHO05D007909 2.2e-15 86.7 162 30.2
SEGI_26717 Sequoiadendron giganteum HOM05D006252 ORTHO05D007909 4.2e-14 82.4 71 54.9
Ca_29226_v3 Cicer arietinum L. HOM05D006252 ORTHO05D008725 3.7e-10 69.3 166 28.9
MELO3C029084.2 Cucumis melo HOM05D006252 ORTHO05D007909 8.3e-10 68.2 59 54.2
arahy.Tifrunner.gnm1.ann1.TR51Z4 Arachis hypogaea HOM05D006252 ORTHO05D007909 2.4e-09 66.6 44 63.6
Zm00001eb258210 Zea mays HOM05D000274 ORTHO05D006772 2.7e-08 63.2 89 42.7
arahy.Tifrunner.gnm1.ann1.LGS4T1 Arachis hypogaea HOM05D006252 ORTHO05D007909 8.6e-07 58.2 48 62.5
SMO334G0054 Selaginella moellendorffii HOM05D005275 ORTHO05D006435 4.3e-06 55.8 161 30.4


User provided reference genes

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