Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR151010 Cardamine hirsuta HOM05D002746 ORTHO05D003037 8.2e-130 467.2 266 100.0
AT3G44960 Arabidopsis thaliana HOM05D002746 ORTHO05D003037 8.4e-74 281.2 255 61.2
AL5G23430 Arabidopsis lyrata HOM05D002746 ORTHO05D003037 6.0e-72 275.0 258 67.4
Sp5g16280 Schrenkiella parvula HOM05D002746 ORTHO05D003037 3.4e-67 259.2 256 59.8
Carub.0005s1069 Capsella rubella HOM05D002746 ORTHO05D003037 5.1e-63 245.4 270 58.5
BcaB02g10742 Brassica carinata HOM05D002746 ORTHO05D003037 2.4e-60 236.5 255 54.9
BcaC01g02244 Brassica carinata HOM05D002746 ORTHO05D003037 1.9e-49 200.3 200 56.0
BolSC21t60282H Brassica oleracea HOM05D002746 ORTHO05D003037 1.9e-49 200.3 200 56.0
C03p67460 Brassica napus HOM05D002746 ORTHO05D003037 6.2e-45 185.3 200 52.5
Thhalv10002903m.g Eutrema salsugineum HOM05D002746 ORTHO05D003037 1.2e-43 181.0 189 56.1
QL01p015272 Quercus lobata HOM05D002746 ORTHO05D003037 9.4e-25 118.2 273 34.4
Potri.009G006100 Populus trichocarpa HOM05D002746 ORTHO05D003037 1.0e-23 114.8 272 33.1
Cfa010292 Carpinus fangiana HOM05D002746 ORTHO05D003037 1.4e-23 114.4 268 33.6
Ciclev10028947m.g Citrus clementina HOM05D002746 ORTHO05D003037 3.9e-23 112.8 267 33.7
Duzib168G1483 Durio zibethinus HOM05D002746 ORTHO05D003037 1.1e-22 111.3 267 33.7
MELO3C004971.2 Cucumis melo HOM05D002746 ORTHO05D003037 2.0e-22 110.5 269 34.6
Thecc.09G350400 Theobroma cacao HOM05D002746 ORTHO05D003037 2.0e-22 110.5 273 35.2
TWI79G0510 Tripterygium wilfordii HOM05D002746 ORTHO05D003037 3.3e-22 109.8 276 32.2
Potri.004G216000 Populus trichocarpa HOM05D002746 ORTHO05D003037 4.4e-22 109.4 269 32.3
TWI79G0630 Tripterygium wilfordii HOM05D002746 ORTHO05D003037 4.4e-22 109.4 276 32.2
PGR119G0855 Punica granatum HOM05D002746 ORTHO05D003037 7.4e-22 108.6 272 33.5
CsaV3_1G013340 Cucumis sativus L. HOM05D002746 ORTHO05D003037 1.3e-21 107.8 272 33.5
vmacro14395 Vaccinium macrocarpon HOM05D002746 ORTHO05D003037 1.7e-21 107.5 264 31.8
GSVIVG01031478001 Vitis vinifera HOM05D002746 ORTHO05D003037 1.7e-21 107.5 269 34.9
Actinidia20430 Actinidia chinensis HOM05D002746 ORTHO05D003037 2.8e-21 106.7 265 38.5
THA.LOC104810879 Tarenaya hassleriana HOM05D002746 ORTHO05D003037 4.8e-21 105.9 195 37.9
Duzib170G0446 Durio zibethinus HOM05D002746 ORTHO05D003037 1.1e-20 104.8 267 33.7
Nn6g35239 Nelumbo nucifera HOM05D002746 ORTHO05D003037 1.1e-20 104.8 282 34.0
Atru.chr3.3527 Acer truncatum HOM05D002746 ORTHO05D003037 1.4e-20 104.4 278 33.1
Manes.04G013601 Manihot esculenta HOM05D002746 ORTHO05D003037 6.9e-20 102.1 264 32.6
CSS0020443 Camellia sinensis var. sinensis HOM05D006101 ORTHO05D007422 9.1e-20 101.7 265 32.1
CSS0026133 Camellia sinensis var. sinensis HOM05D006101 ORTHO05D007422 9.1e-20 101.7 265 32.1
MD11G1147400 Malus domestica HOM05D002746 ORTHO05D003037 9.1e-20 101.7 278 33.8
PGSC0003DMG400000414 Solanum tuberosum HOM05D002746 ORTHO05D003037 9.1e-20 101.7 272 32.4
Prupe.6G111900 Prunus persica HOM05D002746 ORTHO05D003037 1.2e-19 101.3 270 34.1
Manes.11G151800 Manihot esculenta HOM05D002746 ORTHO05D003037 1.5e-19 100.9 268 38.4
Nitab4.5_0000329g0090 Nicotiana tabacum HOM05D002746 ORTHO05D003037 2.0e-19 100.5 283 28.6
Solyc11g066350.2 Solanum lycopersicum HOM05D002746 ORTHO05D003037 2.0e-19 100.5 273 31.9
Sopen11g026100 Solanum pennellii HOM05D002746 ORTHO05D003037 2.0e-19 100.5 273 31.9
Nn2g13843 Nelumbo nucifera HOM05D002746 ORTHO05D003037 2.6e-19 100.1 275 33.1
TAR636G2586 Trochodendron aralioides HOM05D002746 ORTHO05D003037 2.6e-19 100.1 277 31.0
Rhsim11G0027700 Rhododendron simsii HOM05D002746 ORTHO05D003037 3.4e-19 99.8 261 29.1
Phvul.011G085600 Phaseolus vulgaris HOM05D002746 ORTHO05D003037 4.5e-19 99.4 273 35.9
CAN.G546.40 Capsicum annuum HOM05D002746 ORTHO05D003037 7.7e-19 98.6 270 31.9
Glyma.12G080700 Glycine max HOM05D002746 ORTHO05D003037 7.7e-19 98.6 277 34.3
TAR369G0776 Trochodendron aralioides HOM05D002746 ORTHO05D003037 1.3e-18 97.8 267 31.1
Actinidia03695 Actinidia chinensis HOM05D002746 ORTHO05D003037 1.7e-18 97.4 264 31.1
Migut.N02561 Erythranthe guttata HOM05D002746 ORTHO05D003037 2.9e-18 96.7 264 32.2
MSTRG.17763 Avicennia marina HOM05D002746 ORTHO05D003037 3.8e-18 96.3 276 30.8
Dinv29373 Davidia involucrata HOM05D002746 ORTHO05D003037 3.8e-18 96.3 263 31.2
TWI75G0416 Tripterygium wilfordii HOM05D002746 ORTHO05D003037 5.0e-18 95.9 264 31.1
Glyma.11G193300 Glycine max HOM05D002746 ORTHO05D003037 6.5e-18 95.5 269 32.0
MD03G1126800 Malus domestica HOM05D002746 ORTHO05D003037 6.5e-18 95.5 276 33.7
CiPaw.13G123400 Carya illinoinensis HOM05D002746 ORTHO05D003037 8.5e-18 95.1 284 31.7
Oeu007312.2 Olea europaea HOM05D002746 ORTHO05D003037 2.5e-17 93.6 274 30.7
Gohir.A05G107100 Gossypium hirsutum HOM05D002746 ORTHO05D003037 3.2e-17 93.2 262 30.9
VMungo1127G1970 Vigna mungo HOM05D002746 ORTHO05D003037 7.2e-17 92.0 268 35.4
Gorai.009G111300 Gossypium raimondii HOM05D002746 ORTHO05D003037 9.4e-17 91.7 262 30.9
Eucgr.B03933 Eucalyptus grandis HOM05D002746 ORTHO05D003037 1.2e-16 91.3 275 29.1
Cc01_g10360 Coffea canephora HOM05D002746 ORTHO05D003037 2.1e-16 90.5 274 29.2
ClCG03G002610 Citrullus lanatus HOM05D002746 ORTHO05D003037 3.6e-16 89.7 265 30.6
Lsat_1_v5_gn_6_44580 Lactuca sativa HOM05D002746 ORTHO05D003037 3.6e-16 89.7 260 31.5
MSTRG.12339 Avicennia marina HOM05D002746 ORTHO05D003037 4.7e-16 89.4 269 31.2
FvH4_3g30760 Fragaria vesca HOM05D002746 ORTHO05D003037 6.1e-16 89.0 157 41.4
Lj2A1009T38 Lonicera japonica HOM05D002746 ORTHO05D003037 1.4e-15 87.8 274 28.1
Hund01439 Selenicereus undatus HOM05D002746 ORTHO05D003037 2.3e-15 87.0 260 29.2
ECA233G0311 Erigeron canadensis HOM05D002746 ORTHO05D003037 3.0e-15 86.7 281 28.8
Medtr4g057530 Medicago truncatula HOM05D002746 ORTHO05D003037 3.0e-15 86.7 275 30.5
Lj3g0017780 Lotus japonicus HOM05D002746 ORTHO05D003037 8.8e-15 85.1 277 32.9
GSVIVG01016210001 Vitis vinifera HOM05D002746 ORTHO05D003037 8.8e-15 85.1 278 28.8
Dinv16215 Davidia involucrata HOM05D002746 ORTHO05D003037 1.1e-14 84.7 150 40.0
RcHm_v2.0_Chr5g0056951 Rosa chinensis HOM05D002746 ORTHO05D003037 1.1e-14 84.7 156 39.1
SalBow3G3794 Salvia bowleyana HOM05D002746 ORTHO05D003037 1.1e-14 84.7 260 29.6
Gohir.D05G107200 Gossypium hirsutum HOM05D002746 ORTHO05D003037 2.6e-14 83.6 260 29.6
MBI13_g39327_MAGBIO Magnolia biondii HOM05D002746 ORTHO05D003037 7.4e-14 82.0 268 28.4
FAN11G2794 Fragaria x ananassa HOM05D002746 ORTHO05D003037 8.2e-13 78.6 171 38.0
Dinv36375 Davidia involucrata HOM05D002746 ORTHO05D003037 5.3e-12 75.9 273 27.8
Nitab4.5_0003880g0010 Nicotiana tabacum HOM05D002746 ORTHO05D003037 7.0e-12 75.5 274 27.7
FAN21G0473 Fragaria x ananassa HOM05D002746 ORTHO05D003037 1.6e-11 74.3 170 37.1
Oeu046646.1 Olea europaea HOM05D002746 ORTHO05D003037 2.0e-11 73.9 277 27.4
Ca_02470_v3 Cicer arietinum L. HOM05D002746 ORTHO05D003037 3.5e-11 73.2 254 27.6
Ca_30123_v3 Cicer arietinum L. HOM05D002746 ORTHO05D003037 3.5e-11 73.2 254 27.6
HanXRQChr13g0396261 Helianthus annuus HOM05D002746 ORTHO05D003037 3.5e-11 73.2 287 28.6
MD07G1167400 Malus domestica HOM05D002746 ORTHO05D003037 3.5e-11 73.2 108 39.8
TAR633G0282 Trochodendron aralioides HOM05D002746 ORTHO05D003037 4.5e-11 72.8 157 33.8
Oeu040984.1 Olea europaea HOM05D002746 ORTHO05D003037 5.9e-11 72.4 143 35.7
COL.COLO4_11106 Corchorus olitorius HOM05D002746 ORTHO05D003037 7.7e-11 72.0 232 28.4
FAN16G2248 Fragaria x ananassa HOM05D002746 ORTHO05D003037 7.7e-11 72.0 166 37.3
QL08p053342 Quercus lobata HOM05D002746 ORTHO05D003037 1.0e-10 71.6 325 26.5
arahy.Tifrunner.gnm1.ann1.KM9ELV Arachis hypogaea HOM05D006101 ORTHO05D007422 1.3e-10 71.2 246 30.1
CiPaw.01G266600 Carya illinoinensis HOM05D002746 ORTHO05D003037 1.3e-10 71.2 301 26.9
THA.LOC104826901 Tarenaya hassleriana HOM05D002746 ORTHO05D003037 1.3e-10 71.2 168 33.9
FAN25G1769 Fragaria x ananassa HOM05D002746 ORTHO05D003037 2.2e-10 70.5 173 33.5
CANSAT56G3275 Cannabis sativa HOM05D002746 ORTHO05D003037 2.9e-10 70.1 301 26.2
ECA232G1997 Erigeron canadensis HOM05D002746 ORTHO05D003037 2.9e-10 70.1 276 27.2
Gorai.009G309800 Gossypium raimondii HOM05D002746 ORTHO05D003037 2.9e-10 70.1 279 30.5
TPR.G36829 Trifolium pratense HOM05D002746 ORTHO05D003037 2.9e-10 70.1 280 29.6
arahy.Tifrunner.gnm1.ann1.KXCL7T Arachis hypogaea HOM05D002746 ORTHO05D003037 3.8e-10 69.7 163 34.4
ClCG08G007860 Citrullus lanatus HOM05D002746 ORTHO05D003037 3.8e-10 69.7 160 35.0
HanXRQChr13g0404481 Helianthus annuus HOM05D002746 ORTHO05D003037 5.0e-10 69.3 277 26.4
Sabra09G0003400 Salix brachista HOM05D002746 ORTHO05D003037 5.0e-10 69.3 259 28.2
CDE04G0545 Ceratophyllum demersum HOM05D002746 ORTHO05D003037 6.5e-10 68.9 276 27.2
Haze_23707 Corylus avellana HOM05D002746 ORTHO05D003037 6.5e-10 68.9 118 39.8
Prupe.2G206000 Prunus persica HOM05D002746 ORTHO05D003037 6.5e-10 68.9 110 38.2
MSTRG.9139 Avicennia marina HOM05D002746 ORTHO05D003037 8.5e-10 68.6 270 27.0
Os10g0457400 Oryza sativa ssp. japonica HOM05D002746 ORTHO05D003037 8.5e-10 68.6 296 27.4
Sed0007948 Sechium edule HOM05D002746 ORTHO05D003037 8.5e-10 68.6 160 34.4
Actinidia18545 Actinidia chinensis HOM05D002746 ORTHO05D003037 1.1e-09 68.2 102 40.2
MSTRG.8123 Avicennia marina HOM05D002746 ORTHO05D003037 1.1e-09 68.2 279 26.5
Atru.chr12.881 Acer truncatum HOM05D002746 ORTHO05D003037 1.5e-09 67.8 102 41.2
AUR62029178 Chenopodium quinoa HOM05D002746 ORTHO05D003037 1.5e-09 67.8 288 26.4
RcHm_v2.0_Chr1g0362201 Rosa chinensis HOM05D002746 ORTHO05D003037 1.5e-09 67.8 120 39.2
Sed0001530 Sechium edule HOM05D002746 ORTHO05D003037 1.5e-09 67.8 179 31.3
Zm00001eb046680 Zea mays HOM05D019366 ORTHO05D003037 1.5e-09 67.8 282 29.1
Gohir.D06G176308 Gossypium hirsutum HOM05D002746 ORTHO05D003037 1.9e-09 67.4 101 40.6
Gorai.010G207300 Gossypium raimondii HOM05D002746 ORTHO05D003037 1.9e-09 67.4 101 40.6
arahy.Tifrunner.gnm1.ann1.PE2UWG Arachis hypogaea HOM05D002746 ORTHO05D003037 2.5e-09 67.0 163 33.7
CsaV3_2G021060 Cucumis sativus L. HOM05D002746 ORTHO05D003037 2.5e-09 67.0 158 32.9
THA.LOC104816434 Tarenaya hassleriana HOM05D002746 ORTHO05D003037 2.5e-09 67.0 107 39.3
CiPaw.02G170900 Carya illinoinensis HOM05D002746 ORTHO05D003037 4.2e-09 66.2 141 34.8
MELO3C019841.2 Cucumis melo HOM05D002746 ORTHO05D003037 4.2e-09 66.2 158 32.3
Lalb_Chr14g0374441 Lupinus albus HOM05D002746 ORTHO05D003037 5.5e-09 65.9 152 35.5
PGR142G3471 Punica granatum HOM05D002746 ORTHO05D003037 5.5e-09 65.9 272 25.4
Gohir.A05G292300 Gossypium hirsutum HOM05D002746 ORTHO05D003037 7.2e-09 65.5 101 39.6
Actinidia06732 Actinidia chinensis HOM05D002746 ORTHO05D003037 9.4e-09 65.1 140 34.3
Potri.010G229100 Populus trichocarpa HOM05D002746 ORTHO05D003037 9.4e-09 65.1 159 31.4
Gohir.D05G293300 Gossypium hirsutum HOM05D002746 ORTHO05D003037 1.2e-08 64.7 279 29.7
Nitab4.5_0002692g0020 Nicotiana tabacum HOM05D002746 ORTHO05D003037 1.2e-08 64.7 110 35.5
PSO339G4755 Papaver somniferum HOM05D002746 ORTHO05D003037 1.6e-08 64.3 109 35.8
Psat0s1387g0120 Pisum sativum HOM05D002746 ORTHO05D003037 2.1e-08 63.9 163 33.7
Sp6g38420 Schrenkiella parvula HOM05D002746 ORTHO05D003037 2.1e-08 63.9 110 36.4
Gohir.A06G168700 Gossypium hirsutum HOM05D002746 ORTHO05D003037 2.7e-08 63.5 101 39.6
CAN.G694.42 Capsicum annuum HOM05D002746 ORTHO05D003037 3.6e-08 63.2 307 27.4
FAN10G1392 Fragaria x ananassa HOM05D002746 ORTHO05D003037 4.7e-08 62.8 115 35.7
Sabra10G0177700 Salix brachista HOM05D002746 ORTHO05D003037 4.7e-08 62.8 165 30.9
TWI63G0026 Tripterygium wilfordii HOM05D002746 ORTHO05D003037 4.7e-08 62.8 275 25.8
Migut.F01699 Erythranthe guttata HOM05D002746 ORTHO05D003037 6.1e-08 62.4 162 34.6
Hma1.2p1_0779F.1_g216690 Hydrangea macrophylla HOM05D002746 ORTHO05D003037 6.1e-08 62.4 193 28.5
Rhsim09G0146600 Rhododendron simsii HOM05D002746 ORTHO05D003037 6.1e-08 62.4 116 37.1
Thecc.10G087200 Theobroma cacao HOM05D002746 ORTHO05D003037 6.1e-08 62.4 136 33.8
EL10Ac9g22611 Beta vulgaris HOM05D002746 ORTHO05D003037 8.0e-08 62.0 302 24.2
TWI38G1635 Tripterygium wilfordii HOM05D002746 ORTHO05D003037 8.0e-08 62.0 281 26.0
FAN03G0996 Fragaria x ananassa HOM05D002746 ORTHO05D003037 1.0e-07 61.6 120 35.0
FAN06G2396 Fragaria x ananassa HOM05D002746 ORTHO05D003037 1.0e-07 61.6 108 34.3
Nitab4.5_0002285g0050 Nicotiana tabacum HOM05D002746 ORTHO05D003037 1.0e-07 61.6 113 36.3
Cpa.g.sc53.153 Carica papaya HOM05D002746 ORTHO05D003037 1.4e-07 61.2 152 30.9
FvH4_7g18390 Fragaria vesca HOM05D002746 ORTHO05D003037 1.4e-07 61.2 108 34.3
FAN06G0235 Fragaria x ananassa HOM05D002746 ORTHO05D003037 1.4e-07 61.2 108 34.3
Nitab4.5_0000096g0260 Nicotiana tabacum HOM05D002746 ORTHO05D003037 1.4e-07 61.2 344 23.8
A10p31850 Brassica napus HOM05D002746 ORTHO05D003037 2.3e-07 60.5 104 37.5
BolC9t59996H Brassica oleracea HOM05D002746 ORTHO05D003037 2.3e-07 60.5 104 37.5
FAN10G3770 Fragaria x ananassa HOM05D002746 ORTHO05D003037 2.3e-07 60.5 108 34.3
A03p01620 Brassica napus HOM05D002746 ORTHO05D003037 3.0e-07 60.1 102 37.3
SalBow6G2132 Salvia bowleyana HOM05D002746 ORTHO05D003037 3.0e-07 60.1 162 30.2
BraA10t45230Z Brassica rapa HOM05D002746 ORTHO05D003037 4.0e-07 59.7 137 35.8
AT5G04320 Arabidopsis thaliana HOM05D002746 ORTHO05D003037 5.2e-07 59.3 130 32.3
Cc02_g10720 Coffea canephora HOM05D002746 ORTHO05D003037 5.2e-07 59.3 335 24.5
Thhalv10013000m.g Eutrema salsugineum HOM05D002746 ORTHO05D003037 5.2e-07 59.3 105 36.2
FAN01G0726 Fragaria x ananassa HOM05D002746 ORTHO05D003037 5.2e-07 59.3 107 33.6
AL6G13940 Arabidopsis lyrata HOM05D002746 ORTHO05D003037 8.8e-07 58.5 102 35.3
Manes.07G094800 Manihot esculenta HOM05D002746 ORTHO05D003037 8.8e-07 58.5 160 31.9
PSO063G2563 Papaver somniferum HOM05D002746 ORTHO05D003037 1.2e-06 58.2 109 34.9
Sc20g0001570 Simmondsia chinensis HOM05D002746 ORTHO05D003037 1.2e-06 58.2 166 27.7
Sopen11g003940 Solanum pennellii HOM05D002746 ORTHO05D003037 1.2e-06 58.2 272 24.6
Carub.0006s0327 Capsella rubella HOM05D002746 ORTHO05D003037 1.5e-06 57.8 157 29.3
MD01G1100300 Malus domestica HOM05D002746 ORTHO05D003037 1.5e-06 57.8 107 35.5
Solyc11g008090.2 Solanum lycopersicum HOM05D002746 ORTHO05D003037 2.0e-06 57.4 271 24.4
Migut.F01943 Erythranthe guttata HOM05D002746 ORTHO05D003037 2.6e-06 57.0 263 23.2
Lsat_1_v5_gn_9_71621 Lactuca sativa HOM05D002746 ORTHO05D003037 2.6e-06 57.0 113 34.5
C09p72570 Brassica napus HOM05D002746 ORTHO05D003037 3.3e-06 56.6 152 30.9
Nitab4.5_0004987g0050 Nicotiana tabacum HOM05D002746 ORTHO05D003037 3.3e-06 56.6 115 33.0
CAN.G459.30 Capsicum annuum HOM05D002746 ORTHO05D003037 4.4e-06 56.2 293 24.2
COL.COLO4_09863 Corchorus olitorius HOM05D002746 ORTHO05D003037 4.4e-06 56.2 99 35.4
Aa31LG3G3050 Aethionema arabicum HOM05D002746 ORTHO05D003037 7.5e-06 55.5 141 33.3
arahy.Tifrunner.gnm1.ann1.5R9UV9 Arachis hypogaea HOM05D006012 ORTHO05D003037 7.5e-06 55.5 49 53.1
CARHR208960 Cardamine hirsuta HOM05D002746 ORTHO05D003037 7.5e-06 55.5 132 34.1
Potri.008G032600 Populus trichocarpa HOM05D002746 ORTHO05D003037 9.7e-06 55.1 157 31.8


User provided reference genes

Program Settings