Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR150250 Cardamine hirsuta HOM05D000026 ORTHO05D015039 6.6e-38 160.2 82 100.0
AT3G45430 Arabidopsis thaliana HOM05D000026 ORTHO05D000094 1.4e-24 115.9 67 85.1
Sp5g15930 Schrenkiella parvula HOM05D000026 ORTHO05D000094 5.4e-24 114.0 67 82.1
Carub.0005s1126 Capsella rubella HOM05D000026 ORTHO05D000094 1.1e-21 106.3 67 82.1
A06p21400 Brassica napus HOM05D000026 ORTHO05D000094 4.5e-18 94.4 67 70.1
BraA06t25227Z Brassica rapa HOM05D000026 ORTHO05D000094 4.5e-18 94.4 67 70.1
BcaB01g01086 Brassica carinata HOM05D000026 ORTHO05D000094 7.6e-18 93.6 69 71.0
C03p69950 Brassica napus HOM05D000026 ORTHO05D000094 6.5e-17 90.5 67 65.7
BcaC01g01970 Brassica carinata HOM05D000026 ORTHO05D000094 1.9e-16 89.0 66 65.2
BolC3t19255H Brassica oleracea HOM05D000026 ORTHO05D000094 1.9e-16 89.0 66 65.2
THA.LOC104810841 Tarenaya hassleriana HOM05D000026 ORTHO05D000094 1.9e-13 79.0 66 59.1
THA.LOC104799487 Tarenaya hassleriana HOM05D000026 ORTHO05D000094 9.6e-13 76.6 66 63.6
Aa31LG1G12390 Aethionema arabicum HOM05D000026 ORTHO05D000094 1.6e-12 75.9 77 59.7
AT3G45440 Arabidopsis thaliana HOM05D000026 ORTHO05D000094 6.2e-12 73.9 66 54.5
Thhalv10012880m.g Eutrema salsugineum HOM05D000026 ORTHO05D000094 6.9e-11 70.5 67 58.2
AL5G23990 Arabidopsis lyrata HOM05D000026 ORTHO05D000094 1.2e-10 69.7 66 51.5
BolC2t07276H Brassica oleracea HOM05D000026 ORTHO05D000094 1.2e-10 69.7 78 53.8
Thhalv10012788m.g Eutrema salsugineum HOM05D000026 ORTHO05D000094 1.2e-10 69.7 76 52.6
AL8G36890 Arabidopsis lyrata HOM05D000026 ORTHO05D000094 1.5e-10 69.3 76 52.6
BraA10t43827Z Brassica rapa HOM05D000026 ORTHO05D000094 2.0e-10 68.9 76 51.3
Carub.0005s1127 Capsella rubella HOM05D000026 ORTHO05D000094 4.5e-10 67.8 66 50.0
A10p17450 Brassica napus HOM05D000026 ORTHO05D000094 5.8e-10 67.4 76 50.0
C09p52900 Brassica napus HOM05D000026 ORTHO05D000094 1.0e-09 66.6 76 48.7
BolC9t58157H Brassica oleracea HOM05D000026 ORTHO05D000094 1.0e-09 66.6 76 48.7
CARHR150240 Cardamine hirsuta HOM05D000026 ORTHO05D000094 1.0e-09 66.6 66 51.5
BcaB05g22633 Brassica carinata HOM05D000026 ORTHO05D000094 1.3e-09 66.2 63 60.3
AT5G60310 Arabidopsis thaliana HOM05D000026 ORTHO05D000094 1.7e-09 65.9 67 56.7
BcaC04g19683 Brassica carinata HOM05D000026 ORTHO05D000094 1.7e-09 65.9 74 50.0
C02p11820 Brassica napus HOM05D000026 ORTHO05D000094 2.2e-09 65.5 68 57.4
BcaC01g01971 Brassica carinata HOM05D000026 ORTHO05D000094 2.9e-09 65.1 73 47.9
C03p69940 Brassica napus HOM05D000026 ORTHO05D000094 2.9e-09 65.1 73 47.9
BolC3t19254H Brassica oleracea HOM05D000026 ORTHO05D000094 2.9e-09 65.1 73 47.9
Sp5g15950 Schrenkiella parvula HOM05D000026 ORTHO05D000094 2.9e-09 65.1 66 50.0
BcaB01g01087 Brassica carinata HOM05D000026 ORTHO05D000094 3.8e-09 64.7 62 53.2
BcaB02g10740 Brassica carinata HOM05D000026 ORTHO05D000094 3.8e-09 64.7 59 49.2
CARHR273970 Cardamine hirsuta HOM05D000026 ORTHO05D000094 5.0e-09 64.3 67 53.7
Sp5g15920 Schrenkiella parvula HOM05D000026 ORTHO05D000094 5.0e-09 64.3 66 50.0
BcaC04g19686 Brassica carinata HOM05D000026 ORTHO05D000094 6.5e-09 63.9 74 50.0
C09p52930 Brassica napus HOM05D000026 ORTHO05D000094 6.5e-09 63.9 74 50.0
CARHR150350 Cardamine hirsuta HOM05D000026 ORTHO05D000094 6.5e-09 63.9 61 52.5
BcaC03g13983 Brassica carinata HOM05D000026 ORTHO05D000094 1.1e-08 63.2 68 54.4
A06p21380 Brassica napus HOM05D000026 ORTHO05D000094 1.1e-08 63.2 67 46.3
BraA06t25226Z Brassica rapa HOM05D000026 ORTHO05D000094 1.1e-08 63.2 67 46.3
C03p12930 Brassica napus HOM05D000026 ORTHO05D024568 1.4e-08 62.8 77 50.6
BolC3t13756H Brassica oleracea HOM05D000026 ORTHO05D024568 1.4e-08 62.8 77 50.6
THA.LOC104814843 Tarenaya hassleriana HOM05D000026 ORTHO05D000094 1.4e-08 62.8 66 50.0
AL5G23970 Arabidopsis lyrata HOM05D000026 ORTHO05D000094 2.5e-08 62.0 66 50.0
AT3G45410 Arabidopsis thaliana HOM05D000026 ORTHO05D000094 2.5e-08 62.0 66 50.0
BraA06t25228Z Brassica rapa HOM05D000026 ORTHO05D000094 3.2e-08 61.6 73 45.2
CARHR150310 Cardamine hirsuta HOM05D000026 ORTHO05D000094 3.2e-08 61.6 62 48.4
Sp6g21910 Schrenkiella parvula HOM05D000026 ORTHO05D000094 3.2e-08 61.6 66 50.0
Thhalv10012851m.g Eutrema salsugineum HOM05D000026 ORTHO05D000094 4.2e-08 61.2 66 45.5
BcaB08g36324 Brassica carinata HOM05D000026 ORTHO05D000094 7.1e-08 60.5 67 46.3
BcaB08g36329 Brassica carinata HOM05D000026 ORTHO05D000094 7.1e-08 60.5 67 53.7
BcaC01g01969 Brassica carinata HOM05D000026 ORTHO05D000094 7.1e-08 60.5 67 44.8
C03p69960 Brassica napus HOM05D000026 ORTHO05D000094 7.1e-08 60.5 67 44.8
BolC3t19256H Brassica oleracea HOM05D000026 ORTHO05D000094 7.1e-08 60.5 67 44.8
BraA10t43828Z Brassica rapa HOM05D000026 ORTHO05D000094 7.1e-08 60.5 67 53.7
BcaB01g01085 Brassica carinata HOM05D000026 ORTHO05D000094 9.3e-08 60.1 66 48.5
C09p52950 Brassica napus HOM05D000026 ORTHO05D000094 9.3e-08 60.1 67 53.7
Thhalv10002842m.g Eutrema salsugineum HOM05D000026 ORTHO05D000094 9.3e-08 60.1 67 47.8
Sp6g21890 Schrenkiella parvula HOM05D000026 ORTHO05D000094 1.2e-07 59.7 66 42.4
A03p11250 Brassica napus HOM05D000026 ORTHO05D024568 1.6e-07 59.3 77 49.4
A06p21410 Brassica napus HOM05D000026 ORTHO05D000094 1.6e-07 59.3 73 45.2
A06p26910 Brassica napus HOM05D000026 ORTHO05D000094 1.6e-07 59.3 62 48.4
BraA03t10437Z Brassica rapa HOM05D000026 ORTHO05D024568 1.6e-07 59.3 77 49.4
Carub.0008s2101 Capsella rubella HOM05D000026 ORTHO05D000094 1.6e-07 59.3 67 49.3
AT5G60300 Arabidopsis thaliana HOM05D000026 ORTHO05D000094 2.7e-07 58.5 67 49.3
BcaB08g36326 Brassica carinata HOM05D000026 ORTHO05D000094 2.7e-07 58.5 76 46.1
Carub.0005s1125 Capsella rubella HOM05D000026 ORTHO05D000094 2.7e-07 58.5 66 45.5
AL8G36870 Arabidopsis lyrata HOM05D000026 ORTHO05D000094 3.5e-07 58.2 60 43.3
BcaC04g19687 Brassica carinata HOM05D000026 ORTHO05D000094 3.5e-07 58.2 67 50.7
A10p17510 Brassica napus HOM05D000026 ORTHO05D000094 3.5e-07 58.2 67 50.7
BraA10t43831Z Brassica rapa HOM05D000026 ORTHO05D000094 3.5e-07 58.2 67 50.7
CARHR273960 Cardamine hirsuta HOM05D000026 ORTHO05D000094 3.5e-07 58.2 67 46.3
AT3G45330 Arabidopsis thaliana HOM05D000026 ORTHO05D000094 4.6e-07 57.8 64 51.6
BcaB08g36330 Brassica carinata HOM05D000026 ORTHO05D000094 4.6e-07 57.8 67 50.7
BcaC04g19691 Brassica carinata HOM05D000026 ORTHO05D000094 4.6e-07 57.8 67 52.2
BolC9t58169H Brassica oleracea HOM05D000026 ORTHO05D000094 4.6e-07 57.8 67 52.2
BcaC01g02188 Brassica carinata HOM05D000026 ORTHO05D000094 6.1e-07 57.4 62 46.8
A10p17540 Brassica napus HOM05D000026 ORTHO05D000094 6.1e-07 57.4 67 50.7
BolC9t58160H Brassica oleracea HOM05D000026 ORTHO05D000094 6.1e-07 57.4 67 47.8
BolC9t58168H Brassica oleracea HOM05D000026 ORTHO05D000094 6.1e-07 57.4 67 52.2
BraA10t43835Z Brassica rapa HOM05D000026 ORTHO05D000094 6.1e-07 57.4 67 50.7
Carub.0005s1123 Capsella rubella HOM05D000026 ORTHO05D000094 6.1e-07 57.4 66 47.0
BcaB08g36325 Brassica carinata HOM05D000026 ORTHO05D000094 7.9e-07 57.0 67 49.3
A10p17530 Brassica napus HOM05D000026 ORTHO05D000094 1.0e-06 56.6 67 49.3
Sed0025016 Sechium edule HOM05D000026 ORTHO05D000094 1.0e-06 56.6 49 51.0
BcaB08g36331 Brassica carinata HOM05D000026 ORTHO05D000094 1.3e-06 56.2 61 50.8
BraA10t43826Z Brassica rapa HOM05D000026 ORTHO05D000094 1.3e-06 56.2 66 40.9
BraA10t43834Z Brassica rapa HOM05D000026 ORTHO05D000094 1.3e-06 56.2 67 49.3
Haze_20834 Corylus avellana HOM05D000026 ORTHO05D000094 1.3e-06 56.2 45 53.3
Nn2g13436 Nelumbo nucifera HOM05D000026 ORTHO05D000094 1.3e-06 56.2 64 42.2
Nn2g13443 Nelumbo nucifera HOM05D000026 ORTHO05D015039 1.3e-06 56.2 67 44.8
Nn2g13450 Nelumbo nucifera HOM05D000026 ORTHO05D000094 1.3e-06 56.2 61 45.9
BraA06t25629Z Brassica rapa HOM05D000026 ORTHO05D000094 1.8e-06 55.8 62 46.8
Hma1.2p1_0766F.1_g215340 Hydrangea macrophylla HOM05D000026 ORTHO05D000094 1.8e-06 55.8 62 48.4
Hma1.2p1_1940F.1_g308340 Hydrangea macrophylla HOM05D000026 ORTHO05D000094 1.8e-06 55.8 62 48.4
QL07p029954 Quercus lobata HOM05D000026 ORTHO05D000094 1.8e-06 55.8 57 45.6
QL07p030969 Quercus lobata HOM05D000026 ORTHO05D000094 1.8e-06 55.8 57 45.6
AT3G45420 Arabidopsis thaliana HOM05D000026 ORTHO05D000094 3.0e-06 55.1 62 48.4
BcaB01g04650 Brassica carinata HOM05D000026 ORTHO05D000094 3.0e-06 55.1 69 49.3
A10p17520 Brassica napus HOM05D000026 ORTHO05D000094 3.0e-06 55.1 67 47.8
BolC9t58167H Brassica oleracea HOM05D000026 ORTHO05D024568 3.0e-06 55.1 67 47.8
BraA10t43832Z Brassica rapa HOM05D000026 ORTHO05D000094 3.0e-06 55.1 67 47.8
AT5G60280 Arabidopsis thaliana HOM05D000026 ORTHO05D000094 3.9e-06 54.7 66 40.9
A10p17440 Brassica napus HOM05D000026 ORTHO05D000094 3.9e-06 54.7 66 39.4
Haze_20830 Corylus avellana HOM05D000026 ORTHO05D000094 3.9e-06 54.7 45 51.1
Duzib168G1683 Durio zibethinus HOM05D000026 ORTHO05D000094 3.9e-06 54.7 58 41.4
Nn7g36456 Nelumbo nucifera HOM05D000026 ORTHO05D000094 3.9e-06 54.7 64 42.2
PGR031G0262 Punica granatum HOM05D000026 ORTHO05D000094 5.1e-06 54.3 62 41.9
Aqoxy4G03238 Aquilegia oxysepala HOM05D000026 ORTHO05D000094 8.7e-06 53.5 66 42.4
Medtr7g062680 Medicago truncatula HOM05D000026 ORTHO05D000094 8.7e-06 53.5 61 37.7
Nn2g12006 Nelumbo nucifera HOM05D000026 ORTHO05D000094 8.7e-06 53.5 47 46.8
QL07p030927 Quercus lobata HOM05D000026 ORTHO05D000094 8.7e-06 53.5 57 43.9
QL07p030935 Quercus lobata HOM05D000026 ORTHO05D000094 8.7e-06 53.5 57 43.9


User provided reference genes

Program Settings