Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR148660 Cardamine hirsuta HOM05D006998 ORTHO05D008733 6.8e-44 180.3 90 100.0
Carub.0005s0564 Capsella rubella HOM05D006998 ORTHO05D008733 5.4e-41 170.6 91 95.6
BcaC06g31012 Brassica carinata HOM05D006998 ORTHO05D008733 1.3e-39 166.0 90 90.0
AL5G16660 Arabidopsis lyrata HOM05D006998 ORTHO05D008733 2.3e-39 165.2 90 91.1
A06p41260 Brassica napus HOM05D006998 ORTHO05D008733 3.9e-39 164.5 90 87.8
BraA06t27050Z Brassica rapa HOM05D006998 ORTHO05D008733 3.9e-39 164.5 90 87.8
A02p35400 Brassica napus HOM05D006998 ORTHO05D008733 5.0e-39 164.1 90 88.9
AT3G27340 Arabidopsis thaliana HOM05D006998 ORTHO05D008733 8.6e-39 163.3 90 88.9
C07p36390 Brassica napus HOM05D006998 ORTHO05D008733 1.1e-38 162.9 90 88.9
BraA02t08541Z Brassica rapa HOM05D006998 ORTHO05D008733 1.1e-38 162.9 90 87.8
C02p54110 Brassica napus HOM05D006998 ORTHO05D008733 1.9e-38 162.2 90 87.8
BolC2t11473H Brassica oleracea HOM05D006998 ORTHO05D008733 1.9e-38 162.2 90 87.8
Thhalv10005152m.g Eutrema salsugineum HOM05D006998 ORTHO05D008733 2.5e-38 161.8 88 89.8
BolC7t44158H Brassica oleracea HOM05D006998 ORTHO05D008733 4.3e-38 161.0 90 86.7
Sp2g16530 Schrenkiella parvula HOM05D006998 ORTHO05D008733 7.3e-38 160.2 90 87.8
Aa31LG2G5380 Aethionema arabicum HOM05D006998 ORTHO05D008733 6.8e-36 153.7 91 86.8
THA.LOC104823962 Tarenaya hassleriana HOM05D006998 ORTHO05D008733 1.5e-35 152.5 90 84.4
THA.LOC104823963 Tarenaya hassleriana HOM05D006998 ORTHO05D008733 1.5e-35 152.5 90 84.4
Potri.001G336600 Populus trichocarpa HOM05D006998 ORTHO05D008733 1.7e-26 122.5 90 68.9
Manes.15G155800 Manihot esculenta HOM05D006998 ORTHO05D008733 4.9e-26 120.9 90 71.1
Sabra16G0217400 Salix brachista HOM05D006998 ORTHO05D008733 8.3e-26 120.2 90 67.8
Ciclev10017134m.g Citrus clementina HOM05D006998 ORTHO05D008733 3.2e-25 118.2 90 65.6
Haze_03392 Corylus avellana HOM05D006998 ORTHO05D008733 5.4e-25 117.5 90 68.9
Haze_03396 Corylus avellana HOM05D006998 ORTHO05D008733 5.4e-25 117.5 90 68.9
Atru.chr6.2476 Acer truncatum HOM05D006998 ORTHO05D008733 9.2e-25 116.7 90 68.9
Cpa.g.sc130.46 Carica papaya HOM05D006998 ORTHO05D008733 9.2e-25 116.7 81 70.4
Cfa010438 Carpinus fangiana HOM05D006998 ORTHO05D008733 2.7e-24 115.2 90 67.8
Gohir.D07G232600 Gossypium hirsutum HOM05D006998 ORTHO05D008733 4.6e-24 114.4 90 65.6
Gorai.001G267900 Gossypium raimondii HOM05D006998 ORTHO05D008733 4.6e-24 114.4 90 65.6
VMungo0540G0081 Vigna mungo HOM05D006998 ORTHO05D008733 4.6e-24 114.4 69 76.8
RcHm_v2.0_Chr2g0174071 Rosa chinensis HOM05D006998 ORTHO05D008733 7.8e-24 113.6 90 63.3
Gohir.A07G225400 Gossypium hirsutum HOM05D006998 ORTHO05D008733 1.0e-23 113.2 90 64.4
COL.COLO4_29269 Corchorus olitorius HOM05D006998 ORTHO05D008733 1.3e-23 112.8 90 65.6
THA.LOC104801054 Tarenaya hassleriana HOM05D002401 ORTHO05D007109 1.7e-23 112.5 87 67.8
CiPaw.13G047700 Carya illinoinensis HOM05D006998 ORTHO05D008733 2.3e-23 112.1 90 64.4
Duzib147G0953 Durio zibethinus HOM05D006998 ORTHO05D008733 3.0e-23 111.7 81 66.7
QL02p001451 Quercus lobata HOM05D006998 ORTHO05D008733 3.0e-23 111.7 90 65.6
arahy.Tifrunner.gnm1.ann1.W3WD4H Arachis hypogaea HOM05D006998 ORTHO05D008733 3.9e-23 111.3 71 74.6
MD09G1018100 Malus domestica HOM05D006998 ORTHO05D008733 3.9e-23 111.3 90 64.4
Medtr3g052740 Medicago truncatula HOM05D006998 ORTHO05D008733 3.9e-23 111.3 82 65.9
PSO782G5351 Papaver somniferum HOM05D006998 ORTHO05D008733 3.9e-23 111.3 90 57.8
EL10Ac3g06878 Beta vulgaris HOM05D006998 ORTHO05D008733 5.1e-23 110.9 81 67.9
Thecc.04G025300 Theobroma cacao HOM05D006998 ORTHO05D008733 5.1e-23 110.9 80 68.8
Ca_14748_v3 Cicer arietinum L. HOM05D006998 ORTHO05D008733 8.6e-23 110.2 81 66.7
Lj6g0003593 Lotus japonicus HOM05D006998 ORTHO05D008733 8.6e-23 110.2 81 69.1
Lalb_Chr20g0116091 Lupinus albus HOM05D006998 ORTHO05D008733 8.6e-23 110.2 70 74.3
Phvul.006G045900 Phaseolus vulgaris HOM05D006998 ORTHO05D008733 8.6e-23 110.2 69 72.5
COL.COLO4_29265 Corchorus olitorius HOM05D006998 ORTHO05D008733 1.5e-22 109.4 90 64.4
FAN02G1980 Fragaria x ananassa HOM05D006998 ORTHO05D008733 1.5e-22 109.4 90 62.2
FAN14G5586 Fragaria x ananassa HOM05D006998 ORTHO05D008733 1.5e-22 109.4 90 62.2
Glyma.08G318800 Glycine max HOM05D006998 ORTHO05D008733 1.5e-22 109.4 69 73.9
TPR.G39742 Trifolium pratense HOM05D006998 ORTHO05D008733 1.5e-22 109.4 81 66.7
Ah.13g075640 Amaranthus hybridus HOM05D000240 ORTHO05D001153 2.5e-22 108.6 90 63.3
Psat5g174840 Pisum sativum HOM05D006998 ORTHO05D008733 2.5e-22 108.6 69 73.9
Sed0003364 Sechium edule HOM05D006998 ORTHO05D008733 3.3e-22 108.2 81 66.7
MELO3C014841.2 Cucumis melo HOM05D006998 ORTHO05D008733 4.3e-22 107.8 90 61.1
GSVIVG01003966001 Vitis vinifera HOM05D006998 ORTHO05D008733 4.3e-22 107.8 90 65.6
arahy.Tifrunner.gnm1.ann1.24IP75 Arachis hypogaea HOM05D006998 ORTHO05D008733 1.6e-21 105.9 71 71.8
TAR371G1002 Trochodendron aralioides HOM05D006998 ORTHO05D008733 1.6e-21 105.9 90 60.0
AUR62015328 Chenopodium quinoa HOM05D006998 ORTHO05D008733 2.1e-21 105.5 90 62.2
Zm00001eb144320 Zea mays HOM05D006998 ORTHO05D008733 2.1e-21 105.5 90 56.7
TPR.G33763 Trifolium pratense HOM05D006998 ORTHO05D008733 3.6e-21 104.8 96 59.4
vmacro18311 Vaccinium macrocarpon HOM05D006998 ORTHO05D008733 3.6e-21 104.8 90 60.0
CANSAT64G0830 Cannabis sativa HOM05D006998 ORTHO05D008733 4.7e-21 104.4 73 69.9
Actinidia18425 Actinidia chinensis HOM05D006998 ORTHO05D008733 6.2e-21 104.0 90 60.0
Sc03g0006900 Simmondsia chinensis HOM05D006998 ORTHO05D008733 8.1e-21 103.6 90 60.0
Sc03g0007000 Simmondsia chinensis HOM05D006998 ORTHO05D008733 8.1e-21 103.6 90 60.0
MBI06_g05240_MAGBIO Magnolia biondii HOM05D006998 ORTHO05D008733 1.1e-20 103.2 86 62.8
Eucgr.I01699 Eucalyptus grandis HOM05D006998 ORTHO05D008733 1.4e-20 102.8 89 59.6
TWI56G1021 Tripterygium wilfordii HOM05D006998 ORTHO05D008733 1.8e-20 102.4 90 57.8
HPP92_007225 Vanilla planifolia HOM05D006998 ORTHO05D008733 1.8e-20 102.4 81 60.5
SHI03852 Sapria himalayana HOM05D006998 ORTHO05D008733 2.4e-20 102.1 65 75.4
Nn5g27086 Nelumbo nucifera HOM05D006998 ORTHO05D008733 3.1e-20 101.7 72 68.1
PGR142G0400 Punica granatum HOM05D006998 ORTHO05D008733 3.1e-20 101.7 90 58.9
MSTRG.3117 Avicennia marina HOM05D006998 ORTHO05D008733 4.0e-20 101.3 70 67.1
Cc07_g00360 Coffea canephora HOM05D006998 ORTHO05D008733 5.2e-20 100.9 73 63.0
Aqoxy1G01464 Aquilegia oxysepala HOM05D006998 ORTHO05D008733 6.8e-20 100.5 75 60.0
SGA_v2.0_scaffold135G34933 Striga asiatica HOM05D006998 ORTHO05D008733 6.8e-20 100.5 70 65.7
unitig_744.g24361 Utricularia gibba HOM05D002252 ORTHO05D002451 6.8e-20 100.5 87 56.3
Os02g0197800 Oryza sativa ssp. japonica HOM05D006998 ORTHO05D008733 8.9e-20 100.1 89 53.9
Solyc02g093730.4 Solanum lycopersicum HOM05D006998 ORTHO05D008733 8.9e-20 100.1 73 64.4
FAN05G2331 Fragaria x ananassa HOM05D006998 ORTHO05D008733 2.0e-19 99.0 80 62.5
PGSC0003DMG400012647 Solanum tuberosum HOM05D006998 ORTHO05D008733 2.0e-19 99.0 81 60.5
HanXRQChr09g0255661 Helianthus annuus HOM05D006998 ORTHO05D008733 2.6e-19 98.6 70 61.4
CDE04G0536 Ceratophyllum demersum HOM05D006998 ORTHO05D008733 3.4e-19 98.2 70 65.7
SalBow2G2409 Salvia bowleyana HOM05D006998 ORTHO05D008733 3.4e-19 98.2 70 62.9
Lsat_1_v5_gn_4_184841 Lactuca sativa HOM05D006998 ORTHO05D008733 4.4e-19 97.8 70 62.9
ClCG05G013170 Citrullus lanatus HOM05D006998 ORTHO05D008733 9.9e-19 96.7 57 78.9
ECA232G0345 Erigeron canadensis HOM05D006998 ORTHO05D008733 1.3e-18 96.3 90 53.3
PSO063G6009 Papaver somniferum HOM05D006998 ORTHO05D008733 2.2e-18 95.5 124 42.7
ATR1089G022 Amborella trichopoda HOM05D006998 ORTHO05D008733 2.9e-18 95.1 70 64.3
CsaV3_3G027380 Cucumis sativus L. HOM05D006998 ORTHO05D008733 2.9e-18 95.1 57 77.2
MBI06_g43854_MAGBIO Magnolia biondii HOM05D006998 ORTHO05D008733 4.9e-18 94.4 59 72.9
arahy.Tifrunner.gnm1.ann1.5E1CRJ Arachis hypogaea HOM05D006998 ORTHO05D008733 8.4e-18 93.6 71 64.8
Migut.H00050 Erythranthe guttata HOM05D006998 ORTHO05D008733 2.4e-17 92.0 68 64.7
CDE07G0016 Ceratophyllum demersum HOM05D006998 ORTHO05D008733 1.2e-16 89.7 57 73.7
Nitab4.5_0005414g0020 Nicotiana tabacum HOM05D006998 ORTHO05D008733 1.2e-16 89.7 63 63.5
Nitab4.5_0000040g0550 Nicotiana tabacum HOM05D006998 ORTHO05D008733 1.6e-16 89.4 57 68.4
Os01g0904300 Oryza sativa ssp. japonica HOM05D006998 ORTHO05D008733 1.6e-16 89.4 63 66.7
Peaxi162Scf00080g01715 Petunia axillaris HOM05D006998 ORTHO05D008733 1.6e-16 89.4 57 70.2
CAN.G473.52 Capsicum annuum HOM05D006998 ORTHO05D008733 2.7e-16 88.6 57 71.9
SalBow2G0885 Salvia bowleyana HOM05D006998 ORTHO05D008733 6.0e-16 87.4 57 68.4
Hund25052 Selenicereus undatus HOM05D006998 ORTHO05D008733 7.8e-16 87.0 78 57.7
Medtr1252s0010 Medicago truncatula HOM05D006998 ORTHO05D008733 4.7e-13 77.8 80 47.5
AagrBONN_evm.TU.Sc2ySwM_362.2114 Anthoceros agrestis HOM05D006998 ORTHO05D008733 8.1e-13 77.0 58 60.3
Dinv33390 Davidia involucrata HOM05D006998 ORTHO05D008733 2.0e-11 72.4 70 55.7
SMO364G0335 Selaginella moellendorffii HOM05D006998 ORTHO05D008733 2.0e-11 72.4 56 57.1
Prupe.3G299000 Prunus persica HOM05D000008 ORTHO05D000005 2.6e-11 72.0 69 56.5
FvH4_6g52430 Fragaria vesca HOM05D006998 ORTHO05D008733 4.4e-11 71.2 69 52.2
Sed0018714 Sechium edule HOM05D006998 ORTHO05D008733 5.8e-11 70.9 69 52.2
Mapoly0001s0548 Marchantia polymorpha HOM05D006998 ORTHO05D008733 4.9e-10 67.8 62 54.8
CBR_g38954 Chara braunii HOM05D006723 ORTHO05D008194 7.1e-09 63.9 60 46.7
Pp3c11_10230 Physcomitrium patens HOM05D006998 ORTHO05D008733 1.2e-08 63.2 60 46.7


User provided reference genes

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