Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR147570 Cardamine hirsuta HOM05D006540 ORTHO05D008202 1.3e-183 646.4 355 100.0
AL5G15370 Arabidopsis lyrata HOM05D006540 ORTHO05D008202 2.4e-161 572.4 355 90.7
Sp2g15690 Schrenkiella parvula HOM05D006540 ORTHO05D008202 3.3e-158 562.0 357 88.8
Thhalv10004491m.g Eutrema salsugineum HOM05D006540 ORTHO05D008202 1.2e-157 560.1 357 85.4
BcaC06g33900 Brassica carinata HOM05D006540 ORTHO05D008202 1.6e-157 559.7 356 84.6
AT3G26580 Arabidopsis thaliana HOM05D006540 ORTHO05D008202 2.3e-156 555.8 355 88.5
Aa31LG2G5960 Aethionema arabicum HOM05D006540 ORTHO05D008202 1.5e-155 553.1 357 86.0
A06p41910 Brassica napus HOM05D006540 ORTHO05D008202 2.0e-155 552.7 356 85.1
BraA06t27110Z Brassica rapa HOM05D006540 ORTHO05D008202 2.0e-155 552.7 356 85.1
C07p35560 Brassica napus HOM05D006540 ORTHO05D008202 3.4e-155 552.0 356 83.7
BolC7t44080H Brassica oleracea HOM05D006540 ORTHO05D008202 3.4e-155 552.0 356 83.7
BcaC06g31063 Brassica carinata HOM05D006540 ORTHO05D008202 5.6e-150 534.6 357 84.3
Carub.0005s0457 Capsella rubella HOM05D006540 ORTHO05D008202 5.8e-147 524.6 355 83.7
THA.LOC104825662 Tarenaya hassleriana HOM05D006540 ORTHO05D008202 2.5e-126 456.1 355 76.3
CiPaw.05G182700 Carya illinoinensis HOM05D006540 ORTHO05D008202 1.8e-119 433.3 358 67.3
Cpa.g.sc33.16 Carica papaya HOM05D006540 ORTHO05D008202 6.7e-119 431.4 358 70.1
Atru.chr11.2104 Acer truncatum HOM05D006540 ORTHO05D008202 4.3e-118 428.7 359 65.7
Ciclev10032003m.g Citrus clementina HOM05D006540 ORTHO05D008202 2.5e-113 412.9 360 66.4
ClCG05G025710 Citrullus lanatus HOM05D006540 ORTHO05D008202 7.1e-113 411.4 359 63.8
MD16G1102400 Malus domestica HOM05D006540 ORTHO05D008202 3.5e-112 409.1 363 65.0
Cfa009208 Carpinus fangiana HOM05D006540 ORTHO05D008202 7.9e-112 407.9 360 64.4
Duzib268G1404 Durio zibethinus HOM05D006540 ORTHO05D008202 1.0e-111 407.5 361 68.1
Migut.K00595 Erythranthe guttata HOM05D006540 ORTHO05D008202 1.1e-110 404.1 361 62.3
Prupe.1G243900 Prunus persica HOM05D006540 ORTHO05D008202 4.3e-110 402.1 363 65.0
PGR102G2745 Punica granatum HOM05D006540 ORTHO05D008202 4.3e-110 402.1 360 67.5
Eucgr.B03288 Eucalyptus grandis HOM05D006540 ORTHO05D008202 4.8e-109 398.7 360 67.2
MD13G1101900 Malus domestica HOM05D006540 ORTHO05D008202 4.8e-109 398.7 363 64.2
RcHm_v2.0_Chr4g0432921 Rosa chinensis HOM05D006540 ORTHO05D008202 1.0e-106 391.0 362 63.0
MSTRG.568 Avicennia marina HOM05D006540 ORTHO05D008202 2.9e-106 389.4 363 61.4
Manes.13G024900 Manihot esculenta HOM05D006540 ORTHO05D008202 3.8e-106 389.0 356 64.0
SalBow2G2200 Salvia bowleyana HOM05D006540 ORTHO05D008202 5.0e-106 388.7 366 59.8
Gohir.D01G150500 Gossypium hirsutum HOM05D006540 ORTHO05D008202 2.5e-105 386.3 364 64.6
Gorai.002G186600 Gossypium raimondii HOM05D006540 ORTHO05D008202 4.2e-105 385.6 364 64.6
Dinv24788 Davidia involucrata HOM05D006540 ORTHO05D008202 2.1e-104 383.3 357 65.0
Hma1.2p1_0223F.1_g093990 Hydrangea macrophylla HOM05D006540 ORTHO05D008202 5.1e-103 378.6 384 59.1
Oeu059907.1 Olea europaea HOM05D006540 ORTHO05D008202 4.3e-102 375.6 368 59.8
TAR622G1382 Trochodendron aralioides HOM05D006540 ORTHO05D008202 9.7e-102 374.4 359 60.4
Phvul.003G064400 Phaseolus vulgaris HOM05D006540 ORTHO05D008202 1.3e-101 374.0 357 61.9
QL03p058139 Quercus lobata HOM05D006540 ORTHO05D008202 3.1e-100 369.4 414 57.5
vmacro16198 Vaccinium macrocarpon HOM05D006540 ORTHO05D008202 3.1e-100 369.4 364 59.1
FAN22G2305 Fragaria x ananassa HOM05D006540 ORTHO05D008202 1.2e-99 367.5 363 60.3
FAN07G1259 Fragaria x ananassa HOM05D006540 ORTHO05D008202 2.0e-99 366.7 363 60.3
FAN17G1845 Fragaria x ananassa HOM05D006540 ORTHO05D008202 2.6e-99 366.3 363 60.1
Lj6A811T79 Lonicera japonica HOM05D006540 ORTHO05D008202 2.6e-99 366.3 364 58.2
Thecc.02G259400 Theobroma cacao HOM05D006540 ORTHO05D008202 2.6e-99 366.3 356 64.6
TWI18G0987 Tripterygium wilfordii HOM05D006540 ORTHO05D008202 3.4e-99 365.9 361 60.1
Actinidia37429 Actinidia chinensis HOM05D006540 ORTHO05D008202 7.7e-99 364.8 358 62.0
Duzib248G0112 Durio zibethinus HOM05D006540 ORTHO05D008202 1.0e-98 364.4 361 63.7
FvH4_4g25530 Fragaria vesca HOM05D006540 ORTHO05D008202 1.0e-98 364.4 363 59.8
FAN12G0822 Fragaria x ananassa HOM05D006540 ORTHO05D008202 1.0e-98 364.4 363 59.8
Glyma.17G134500 Glycine max HOM05D006540 ORTHO05D008202 1.3e-98 364.0 358 63.1
CANSAT35G0572 Cannabis sativa HOM05D006540 ORTHO05D008202 5.0e-98 362.1 360 61.9
Lj4g0023216 Lotus japonicus HOM05D006540 ORTHO05D008202 1.9e-97 360.1 361 59.8
arahy.Tifrunner.gnm1.ann1.LD9JWE Arachis hypogaea HOM05D006540 ORTHO05D008202 4.2e-97 359.0 364 60.2
arahy.Tifrunner.gnm1.ann1.NX3C69 Arachis hypogaea HOM05D006540 ORTHO05D008202 9.4e-97 357.8 364 59.9
DCAR_024432 Daucus carota HOM05D006540 ORTHO05D008202 1.2e-96 357.5 339 61.9
Haze_12245 Corylus avellana HOM05D006540 ORTHO05D008202 2.1e-96 356.7 379 56.5
Gohir.A01G159600 Gossypium hirsutum HOM05D006540 ORTHO05D008202 3.0e-95 352.8 357 62.2
Rhsim12G0110600 Rhododendron simsii HOM05D006540 ORTHO05D008202 5.1e-95 352.1 363 60.3
COL.COLO4_24263 Corchorus olitorius HOM05D006540 ORTHO05D008202 4.4e-94 349.0 356 56.2
Cc11_g15700 Coffea canephora HOM05D006540 ORTHO05D008202 2.2e-93 346.7 371 59.3
PGSC0003DMG400018605 Solanum tuberosum HOM05D006540 ORTHO05D008202 2.2e-93 346.7 366 59.6
Sc04g0009450 Simmondsia chinensis HOM05D006540 ORTHO05D008202 1.1e-92 344.4 357 60.8
EL10Ac6g13801 Beta vulgaris HOM05D006540 ORTHO05D008202 1.8e-92 343.6 365 57.5
Potri.013G090000 Populus trichocarpa HOM05D006540 ORTHO05D008202 1.8e-92 343.6 351 59.8
Psat4g116680 Pisum sativum HOM05D006540 ORTHO05D008202 2.0e-91 340.1 366 57.4
Actinidia15092 Actinidia chinensis HOM05D006540 ORTHO05D008202 1.7e-90 337.0 358 58.9
Sabra13G0070200 Salix brachista HOM05D006540 ORTHO05D008202 2.2e-90 336.7 317 64.0
Peaxi162Scf00128g00138 Petunia axillaris HOM05D006540 ORTHO05D008202 2.5e-89 333.2 366 56.6
Medtr8g069450 Medicago truncatula HOM05D006540 ORTHO05D008202 3.2e-89 332.8 357 56.0
CSS0000303 Camellia sinensis var. sinensis HOM05D006540 ORTHO05D008202 7.2e-89 331.6 367 58.9
Lsat_1_v5_gn_8_152220 Lactuca sativa HOM05D006540 ORTHO05D008202 7.2e-89 331.6 367 58.3
Aqoxy3G01202 Aquilegia oxysepala HOM05D006540 ORTHO05D008202 3.6e-88 329.3 362 55.5
Nitab4.5_0000007g0060 Nicotiana tabacum HOM05D006540 ORTHO05D008202 6.1e-88 328.6 368 54.3
Ca_22583_v3 Cicer arietinum L. HOM05D006540 ORTHO05D008202 1.4e-87 327.4 238 73.1
PSO017G4849 Papaver somniferum HOM05D006540 ORTHO05D008202 5.2e-87 325.5 374 52.7
vmacro01127 Vaccinium macrocarpon HOM05D006540 ORTHO05D008202 1.1e-86 324.3 363 52.6
CDE09G1037 Ceratophyllum demersum HOM05D006540 ORTHO05D008202 2.0e-86 323.6 357 54.9
BcaB01g00564 Brassica carinata HOM05D006540 ORTHO05D008202 3.3e-86 322.8 287 65.9
CDE02G2769 Ceratophyllum demersum HOM05D006540 ORTHO05D008202 4.4e-86 322.4 357 56.0
Nitab4.5_0003628g0010 Nicotiana tabacum HOM05D006540 ORTHO05D008202 2.2e-85 320.1 368 54.3
ECA233G5619 Erigeron canadensis HOM05D006540 ORTHO05D008202 8.2e-85 318.2 250 66.8
AUR62024282 Chenopodium quinoa HOM05D006540 ORTHO05D008202 2.4e-84 316.6 361 56.0
CAN.G832.5 Capsicum annuum HOM05D006540 ORTHO05D008202 3.1e-84 316.2 367 54.5
HanXRQChr08g0208131 Helianthus annuus HOM05D006540 ORTHO05D008202 4.1e-84 315.8 368 55.4
Sopen05g008320 Solanum pennellii HOM05D006540 ORTHO05D008202 7.0e-84 315.1 365 51.8
unitig_21.g20872 Utricularia gibba HOM05D006540 ORTHO05D008202 2.6e-83 313.2 365 52.6
Ah.03g133040 Amaranthus hybridus HOM05D006540 ORTHO05D008202 3.5e-83 312.8 363 56.2
GSVIVG01004073001 Vitis vinifera HOM05D006540 ORTHO05D008202 3.5e-83 312.8 196 78.1
ATR0686G190 Amborella trichopoda HOM05D006540 ORTHO05D008202 4.5e-83 312.4 332 55.7
Lalb_Chr05g0228421 Lupinus albus HOM05D006540 ORTHO05D008202 5.9e-83 312.0 359 52.6
Nn4g22628 Nelumbo nucifera HOM05D006540 ORTHO05D008202 1.7e-82 310.5 193 80.3
PSO478G4529 Papaver somniferum HOM05D006540 ORTHO05D008202 8.0e-80 301.6 353 52.7
AUR62005459 Chenopodium quinoa HOM05D006540 ORTHO05D008202 3.0e-79 299.7 361 52.6
Rhsim12G0041000 Rhododendron simsii HOM05D006540 ORTHO05D008202 4.0e-79 299.3 437 47.1
MBI10_g13027_MAGBIO Magnolia biondii HOM05D006540 ORTHO05D008202 7.2e-73 278.5 391 50.9
VMungo0251G1250 Vigna mungo HOM05D006540 ORTHO05D008202 4.7e-72 275.8 291 59.1
CsaV3_5G031170 Cucumis sativus L. HOM05D006540 ORTHO05D008202 4.0e-71 272.7 286 59.8
MELO3C011955.2 Cucumis melo HOM05D006540 ORTHO05D008202 5.2e-71 272.3 286 59.8
TPR.G17765 Trifolium pratense HOM05D006540 ORTHO05D008202 9.1e-68 261.5 356 49.4
Sed0005489 Sechium edule HOM05D006540 ORTHO05D008202 3.8e-66 256.1 289 56.1
HPP92_002022 Vanilla planifolia HOM05D006540 ORTHO05D008202 8.0e-64 248.4 251 55.4
TAR374G0845 Trochodendron aralioides HOM05D006540 ORTHO05D008202 2.6e-62 243.4 285 59.3
Os03g0428800 Oryza sativa ssp. japonica HOM05D006540 ORTHO05D008202 2.7e-59 233.4 201 61.7
Zm00001eb096140 Zea mays HOM05D006540 ORTHO05D008202 2.8e-56 223.4 246 53.7
Mapoly0037s0067 Marchantia polymorpha HOM05D006540 ORTHO05D008202 3.3e-49 199.9 240 49.2
AagrBONN_evm.TU.Sc2ySwM_340.367 Anthoceros agrestis HOM05D006540 ORTHO05D008202 1.2e-48 198.0 249 43.8
SMO347G0417 Selaginella moellendorffii HOM05D006540 ORTHO05D008202 5.2e-47 192.6 237 46.0
SEGI_37038 Sequoiadendron giganteum HOM05D006540 ORTHO05D008202 8.3e-45 185.3 173 51.4
Pp3c27_6670 Physcomitrium patens HOM05D006540 ORTHO05D008202 3.0e-42 176.8 193 46.1
BcaC06g33898 Brassica carinata HOM05D006540 ORTHO05D008202 6.0e-35 152.5 82 87.8
Cre12.g528050 Chlamydomonas reinhardtii HOM05D006540 ORTHO05D008202 2.1e-19 100.9 151 37.7
CBR_g8379 Chara braunii HOM05D006540 ORTHO05D008202 3.0e-18 97.1 133 39.1
RcHm_v2.0_Chr5g0067811 Rosa chinensis HOM05D006540 ORTHO05D008202 8.1e-16 89.0 61 77.0
MCO07G599 Micromonas commoda HOM05D006540 ORTHO05D008202 1.1e-15 88.6 151 36.4
Oeu029879.1 Olea europaea HOM05D006540 ORTHO05D008202 5.3e-15 86.3 72 56.9
QL04p066147 Quercus lobata HOM05D006540 ORTHO05D008202 2.0e-14 84.3 52 84.6
PRCOL_00004949 Prasinoderma coloniale HOM05D006540 ORTHO05D008202 8.4e-13 79.0 211 29.4
unitig_744.g24293 Utricularia gibba HOM05D006540 ORTHO05D008202 5.6e-09 66.2 44 63.6
TAR625G0150 Trochodendron aralioides HOM05D006540 ORTHO05D008202 8.1e-08 62.4 105 41.9


User provided reference genes

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