Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR147430 Cardamine hirsuta HOM05D004862 ORTHO05D005841 3.6e-285 984.2 480 100.0
AT3G26410 Arabidopsis thaliana HOM05D004862 ORTHO05D005841 1.2e-272 942.6 480 96.0
AL5G15180 Arabidopsis lyrata HOM05D004862 ORTHO05D005841 2.7e-272 941.4 480 96.2
Thhalv10004120m.g Eutrema salsugineum HOM05D004862 ORTHO05D005841 1.5e-270 935.6 480 95.0
Carub.0005s0438 Capsella rubella HOM05D004862 ORTHO05D005841 6.2e-269 930.2 480 95.0
Sp2g15560 Schrenkiella parvula HOM05D004862 ORTHO05D005841 8.9e-268 926.4 480 94.2
BolC2t11381H Brassica oleracea HOM05D004862 ORTHO05D005841 1.3e-263 912.5 480 92.7
A06p42030 Brassica napus HOM05D004862 ORTHO05D005841 8.7e-263 909.8 481 93.3
BcaB07g30229 Brassica carinata HOM05D004862 ORTHO05D005841 2.5e-262 908.3 480 92.5
BraA02t08465Z Brassica rapa HOM05D004862 ORTHO05D005841 4.3e-262 907.5 480 92.1
BraA06t27120Z Brassica rapa HOM05D004862 ORTHO05D005841 5.6e-262 907.1 481 93.1
C07p35450 Brassica napus HOM05D004862 ORTHO05D005841 4.7e-261 904.0 481 92.7
BolC7t44069H Brassica oleracea HOM05D004862 ORTHO05D005841 4.7e-261 904.0 481 92.7
BcaC03g17366 Brassica carinata HOM05D004862 ORTHO05D005841 1.5e-259 899.0 504 88.3
Aa31LG2G6120 Aethionema arabicum HOM05D004862 ORTHO05D005841 2.4e-257 891.7 480 91.0
C02p53070 Brassica napus HOM05D004862 ORTHO05D005841 3.3e-246 854.7 504 85.5
BcaNung06886 Brassica carinata HOM05D004862 ORTHO05D005841 2.0e-243 845.5 490 87.3
THA.LOC104818254 Tarenaya hassleriana HOM05D004862 ORTHO05D005841 2.8e-229 798.5 480 80.6
CiPaw.13G145700 Carya illinoinensis HOM05D004862 ORTHO05D005841 1.5e-222 776.2 486 75.7
A02p34570 Brassica napus HOM05D004862 ORTHO05D005841 2.5e-222 775.4 412 92.2
Dinv24234 Davidia involucrata HOM05D004862 ORTHO05D005841 5.3e-220 767.7 489 75.1
Glyma.08G075600 Glycine max HOM05D004862 ORTHO05D005841 6.9e-220 767.3 485 75.9
arahy.Tifrunner.gnm1.ann1.34Q84K Arachis hypogaea HOM05D004862 ORTHO05D005841 3.4e-219 765.0 485 75.5
arahy.Tifrunner.gnm1.ann1.WE1E8S Arachis hypogaea HOM05D004862 ORTHO05D005841 4.5e-219 764.6 485 75.3
Thecc.02G156500 Theobroma cacao HOM05D004862 ORTHO05D005841 7.7e-219 763.8 488 75.2
Cfa010154 Carpinus fangiana HOM05D004862 ORTHO05D005841 1.0e-218 763.5 481 76.3
Phvul.002G205600 Phaseolus vulgaris HOM05D004862 ORTHO05D005841 1.0e-218 763.5 485 75.5
Manes.14G165200 Manihot esculenta HOM05D004862 ORTHO05D005841 1.3e-218 763.1 480 76.5
FAN14G5837 Fragaria x ananassa HOM05D004862 ORTHO05D005841 3.8e-218 761.5 480 75.6
Nitab4.5_0000078g0200 Nicotiana tabacum HOM05D004862 ORTHO05D005841 3.8e-218 761.5 492 74.6
Solyc10g047120.2 Solanum lycopersicum HOM05D004862 ORTHO05D005841 5.0e-218 761.1 483 74.5
Sopen10g017280 Solanum pennellii HOM05D004862 ORTHO05D005841 8.5e-218 760.4 483 74.3
Duzib132G0210 Durio zibethinus HOM05D004862 ORTHO05D005841 1.1e-217 760.0 488 74.6
Haze_23539 Corylus avellana HOM05D004862 ORTHO05D005841 1.4e-217 759.6 481 75.9
FAN14G4788 Fragaria x ananassa HOM05D004862 ORTHO05D005841 1.4e-217 759.6 480 75.4
Lsat_1_v5_gn_9_117961 Lactuca sativa HOM05D004862 ORTHO05D005841 1.4e-217 759.6 483 74.3
Lj4g0019477 Lotus japonicus HOM05D004862 ORTHO05D005841 1.4e-217 759.6 486 74.3
DCAR_021834 Daucus carota HOM05D004862 ORTHO05D005841 1.9e-217 759.2 484 73.1
Gohir.A01G012300 Gossypium hirsutum HOM05D004862 ORTHO05D005841 1.9e-217 759.2 488 74.6
MD12G1223100 Malus domestica HOM05D004862 ORTHO05D005841 4.2e-217 758.1 483 74.3
Nitab4.5_0005079g0020 Nicotiana tabacum HOM05D004862 ORTHO05D005841 4.2e-217 758.1 492 74.0
CSS0027197 Camellia sinensis var. sinensis HOM05D004862 ORTHO05D005841 5.5e-217 757.7 496 72.6
Glyma.05G121000 Glycine max HOM05D004862 ORTHO05D005841 5.5e-217 757.7 485 74.6
CAN.G1.65 Capsicum annuum HOM05D004862 ORTHO05D005841 7.2e-217 757.3 480 74.0
FAN05G4126 Fragaria x ananassa HOM05D004862 ORTHO05D005841 7.2e-217 757.3 480 75.2
CSS0014529 Camellia sinensis var. sinensis HOM05D004862 ORTHO05D005841 9.4e-217 756.9 496 72.6
RcHm_v2.0_Chr3g0454151 Rosa chinensis HOM05D004862 ORTHO05D005841 9.4e-217 756.9 480 74.8
Aqoxy6G00342 Aquilegia oxysepala HOM05D004862 ORTHO05D005841 1.6e-216 756.1 480 75.2
Prupe.6G329700 Prunus persica HOM05D004862 ORTHO05D005841 1.6e-216 756.1 481 74.8
FvH4_6g05370 Fragaria vesca HOM05D004862 ORTHO05D005841 2.1e-216 755.7 480 75.0
FAN02G3155 Fragaria x ananassa HOM05D004862 ORTHO05D005841 7.9e-216 753.8 480 75.2
COL.COLO4_33088 Corchorus olitorius HOM05D004862 ORTHO05D005841 1.8e-215 752.7 488 74.2
PGR042G3925 Punica granatum HOM05D004862 ORTHO05D005841 3.9e-215 751.5 483 73.9
Gorai.002G015300 Gossypium raimondii HOM05D004862 ORTHO05D005841 5.1e-215 751.1 488 74.2
Ca_29818_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 1.1e-214 750.0 485 73.8
ClCG09G014610 Citrullus lanatus HOM05D004862 ORTHO05D005841 7.4e-214 747.3 481 75.7
Cc02_g18820 Coffea canephora HOM05D004862 ORTHO05D005841 1.3e-213 746.5 485 73.4
Nn1g06191 Nelumbo nucifera HOM05D004862 ORTHO05D005841 1.3e-213 746.5 484 73.3
Rhsim11G0133700 Rhododendron simsii HOM05D004862 ORTHO05D005841 1.3e-213 746.5 492 72.6
Sed0027136 Sechium edule HOM05D004862 ORTHO05D005841 1.7e-213 746.1 481 75.9
TWI23G0249 Tripterygium wilfordii HOM05D004862 ORTHO05D005841 1.7e-213 746.1 480 72.9
VMungo0251G1232 Vigna mungo HOM05D004862 ORTHO05D005841 2.2e-213 745.7 510 71.6
FAN09G3019 Fragaria x ananassa HOM05D004862 ORTHO05D005841 6.3e-213 744.2 480 74.2
Lalb_Chr07g0189371 Lupinus albus HOM05D004862 ORTHO05D005841 6.3e-213 744.2 489 74.2
MELO3C012691.2 Cucumis melo HOM05D004862 ORTHO05D005841 1.1e-212 743.4 482 75.1
Medtr4g094315 Medicago truncatula HOM05D004862 ORTHO05D005841 1.1e-212 743.4 485 74.2
PGSC0003DMG400017691 Solanum tuberosum HOM05D004862 ORTHO05D005841 1.1e-212 743.4 519 69.4
Gohir.D13G060400 Gossypium hirsutum HOM05D004862 ORTHO05D005841 1.4e-212 743.0 485 74.2
Ciclev10015108m.g Citrus clementina HOM05D004862 ORTHO05D005841 1.2e-211 740.0 480 74.0
Oeu000228.1 Olea europaea HOM05D004862 ORTHO05D005841 1.2e-211 740.0 481 73.4
CANSAT54G0577 Cannabis sativa HOM05D004862 ORTHO05D005841 1.5e-211 739.6 486 73.3
Sc09g0004450 Simmondsia chinensis HOM05D004862 ORTHO05D005841 2.0e-211 739.2 480 73.1
SGA_v2.0_scaffold332G48937 Striga asiatica HOM05D004862 ORTHO05D005841 2.6e-211 738.8 480 74.6
HanXRQChr03g0065771 Helianthus annuus HOM05D004862 ORTHO05D005841 5.9e-211 737.6 480 72.7
Gorai.013G068500 Gossypium raimondii HOM05D004862 ORTHO05D005841 7.7e-211 737.3 499 72.5
Psat7g096360 Pisum sativum HOM05D004862 ORTHO05D005841 2.2e-210 735.7 485 73.0
Gohir.D01G013500 Gossypium hirsutum HOM05D004862 ORTHO05D005841 2.9e-210 735.3 473 74.2
AUR62003397 Chenopodium quinoa HOM05D004862 ORTHO05D005841 8.5e-210 733.8 486 72.0
Lj5A244T54 Lonicera japonica HOM05D004862 ORTHO05D005841 3.2e-209 731.9 481 72.6
Ah.04g163010 Amaranthus hybridus HOM05D004862 ORTHO05D005841 1.6e-208 729.6 484 72.1
Hund06875 Selenicereus undatus HOM05D004862 ORTHO05D005841 2.7e-208 728.8 492 71.3
CDE02G2941 Ceratophyllum demersum HOM05D004862 ORTHO05D005841 3.6e-208 728.4 480 72.9
ECA240G2004 Erigeron canadensis HOM05D004862 ORTHO05D005841 4.4e-206 721.5 474 72.4
CsaV3_7G022230 Cucumis sativus L. HOM05D004862 ORTHO05D005841 7.4e-206 720.7 463 75.2
Potri.001G207000 Populus trichocarpa HOM05D004862 ORTHO05D005841 9.7e-206 720.3 480 71.9
PSO675G5038 Papaver somniferum HOM05D004862 ORTHO05D005841 2.8e-205 718.8 484 71.7
QL01p020593 Quercus lobata HOM05D004862 ORTHO05D005841 6.3e-205 717.6 575 62.8
vmacro01803 Vaccinium macrocarpon HOM05D004862 ORTHO05D005841 8.2e-205 717.2 573 63.5
Gohir.A13G061500 Gossypium hirsutum HOM05D004862 ORTHO05D005841 5.3e-204 714.5 463 74.3
EL10Ac4g08938 Beta vulgaris HOM05D004862 ORTHO05D005841 9.1e-204 713.8 486 70.2
PSO541G6054 Papaver somniferum HOM05D004862 ORTHO05D005841 1.6e-203 713.0 489 71.0
Migut.B00646 Erythranthe guttata HOM05D004862 ORTHO05D005841 4.5e-203 711.4 480 70.8
ATR1136G066 Amborella trichopoda HOM05D004862 ORTHO05D005841 3.8e-202 708.4 489 69.5
MSTRG.16558 Avicennia marina HOM05D004862 ORTHO05D005841 6.5e-202 707.6 480 71.2
Os02g0556400 Oryza sativa ssp. japonica HOM05D004862 ORTHO05D005841 6.5e-202 707.6 483 69.6
Lj9A317G73 Lonicera japonica HOM05D004862 ORTHO05D005841 7.2e-201 704.1 492 68.7
MBI06_g20970_MAGBIO Magnolia biondii HOM05D004862 ORTHO05D005841 9.4e-201 703.7 488 70.5
Sabra01G0160300 Salix brachista HOM05D004862 ORTHO05D005841 5.9e-195 684.5 564 61.7
SalBow5G3806 Salvia bowleyana HOM05D004862 ORTHO05D005841 1.8e-191 672.9 569 60.6
AUR62004780 Chenopodium quinoa HOM05D004862 ORTHO05D005841 4.0e-191 671.8 541 62.5
SHI16537 Sapria himalayana HOM05D004862 ORTHO05D005841 2.0e-190 669.5 480 67.3
GSVIVG01029751001 Vitis vinifera HOM05D004862 ORTHO05D005841 3.4e-190 668.7 480 68.5
Eucgr.G00660 Eucalyptus grandis HOM05D004862 ORTHO05D005841 9.8e-190 667.2 412 77.2
SalBow5G4932 Salvia bowleyana HOM05D004862 ORTHO05D005841 1.4e-188 663.3 594 58.1
Peaxi162Scf00003g03739 Petunia axillaris HOM05D004862 ORTHO05D005841 3.5e-187 658.7 412 77.2
BcaC03g17340 Brassica carinata HOM05D004862 ORTHO05D005841 9.2e-180 634.0 362 88.1
BolC2t11366H Brassica oleracea HOM05D004862 ORTHO05D005841 1.5e-177 626.7 334 93.1
C02p53050 Brassica napus HOM05D004862 ORTHO05D005841 4.3e-177 625.2 326 94.2
Ciclev10008412m.g Citrus clementina HOM05D004862 ORTHO05D005841 1.3e-173 613.6 448 67.0
Mapoly0006s0193 Marchantia polymorpha HOM05D004862 ORTHO05D005841 7.0e-172 607.8 484 61.0
SEGI_34202 Sequoiadendron giganteum HOM05D004862 ORTHO05D005841 8.6e-170 600.9 427 67.0
TAR116G0002 Trochodendron aralioides HOM05D004862 ORTHO05D005841 3.4e-166 589.0 375 74.9
Atru.chr6.1121 Acer truncatum HOM05D004862 ORTHO05D005841 1.7e-162 576.6 361 76.7
Pp3c13_18080 Physcomitrium patens HOM05D004862 ORTHO05D005841 1.1e-161 573.9 494 56.3
C02p52870 Brassica napus HOM05D004862 ORTHO05D005841 1.9e-161 573.2 328 88.7
HPP92_004639 Vanilla planifolia HOM05D004862 ORTHO05D005841 2.5e-161 572.8 373 72.1
SMO115G0021 Selaginella moellendorffii HOM05D004862 ORTHO05D005841 3.6e-160 568.9 485 56.7
HPP92_004630 Vanilla planifolia HOM05D004862 ORTHO05D005841 1.4e-159 567.0 373 71.6
TPR.G31479 Trifolium pratense HOM05D004862 ORTHO05D005841 1.6e-155 553.5 342 75.7
Cpa.g.sc845.1 Carica papaya HOM05D004862 ORTHO05D005841 2.1e-152 543.1 328 81.4
FAN05G4337 Fragaria x ananassa HOM05D004862 ORTHO05D005841 2.0e-150 536.6 328 78.0
TAR628G0283 Trochodendron aralioides HOM05D004862 ORTHO05D005841 3.8e-149 532.3 328 78.7
CBR_g37214 Chara braunii HOM05D004862 ORTHO05D005841 9.6e-145 517.7 482 53.9
Zm00001eb243830 Zea mays HOM05D004862 ORTHO05D005841 2.2e-141 506.5 328 74.1
CsaV3_7G014980 Cucumis sativus L. HOM05D004862 ORTHO05D005841 1.0e-130 471.1 296 76.0
SEGI_00112 Sequoiadendron giganteum HOM05D004862 ORTHO05D005841 3.9e-130 469.2 352 66.5
CsaV3_UNG189490 Cucumis sativus L. HOM05D004862 ORTHO05D005841 8.8e-98 361.7 222 77.5
MCO05G740 Micromonas commoda HOM05D004862 ORTHO05D005841 2.2e-96 357.1 446 43.3
Cre08.g359100 Chlamydomonas reinhardtii HOM05D004862 ORTHO05D005841 1.8e-95 354.0 447 43.0
Ca_29817_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 7.5e-89 332.0 211 74.4
PRCOL_00003583 Prasinoderma coloniale HOM05D004862 ORTHO05D005841 1.9e-84 317.4 427 42.2
unitig_26.g9584 Utricularia gibba HOM05D004862 ORTHO05D005841 2.8e-80 303.5 227 62.1
Ca_25384_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 1.5e-76 291.2 191 72.8
CsaV3_7G015000 Cucumis sativus L. HOM05D004862 ORTHO05D005841 4.9e-72 276.2 159 83.6
CsaV3_UNG187480 Cucumis sativus L. HOM05D004862 ORTHO05D005841 4.9e-72 276.2 159 83.6
CsaV3_7G014960 Cucumis sativus L. HOM05D004862 ORTHO05D005841 1.7e-69 267.7 159 82.4
unitig_26.g9585 Utricularia gibba HOM05D004862 ORTHO05D005841 1.4e-63 248.1 135 80.7
Cfa021801 Carpinus fangiana HOM05D004862 ORTHO05D005841 7.3e-52 209.1 410 32.0
BolC2t11379H Brassica oleracea HOM05D004862 ORTHO05D005841 1.6e-46 191.4 119 81.5
CsaV3_7G014970 Cucumis sativus L. HOM05D004862 ORTHO05D005841 6.8e-42 176.0 94 89.4
CsaV3_7G015010 Cucumis sativus L. HOM05D004862 ORTHO05D005841 8.9e-42 175.6 93 90.3
Ca_31280_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 1.2e-41 175.3 106 79.2
CsaV3_UNG197500 Cucumis sativus L. HOM05D004862 ORTHO05D005841 1.3e-40 171.8 106 81.1
AagrBONN_evm.TU.Sc2ySwM_344.4621 Anthoceros agrestis HOM05D004862 ORTHO05D005841 4.1e-39 166.8 137 58.4
Potri.003G022650 Populus trichocarpa HOM05D004862 ORTHO05D005841 5.1e-29 133.3 91 69.2
TAR628G0087 Trochodendron aralioides HOM05D004862 ORTHO05D005841 5.6e-20 103.2 93 50.5
Cfa010153 Carpinus fangiana HOM05D004862 ORTHO05D005841 1.5e-17 95.1 70 65.7
Actinidia00239 Actinidia chinensis HOM05D004862 ORTHO05D005841 2.6e-17 94.4 87 54.0
CsaV3_7G014950 Cucumis sativus L. HOM05D004862 ORTHO05D005841 7.6e-17 92.8 65 61.5
Potri.003G022701 Populus trichocarpa HOM05D004862 ORTHO05D005841 4.9e-16 90.1 77 58.4
unitig_26.g9586 Utricularia gibba HOM05D004862 ORTHO05D005841 3.2e-15 87.4 69 65.2
MCO05G371 Micromonas commoda HOM05D004862 ORTHO05D267887 9.3e-07 59.3 130 33.1
Dinv28090 Davidia involucrata HOM05D000259 ORTHO05D000155 6.0e-06 56.6 123 35.0


User provided reference genes

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