Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR146570 Cardamine hirsuta HOM05D007408 ORTHO05D009325 1.0e-90 336.7 163 100.0
Sp2g14870 Schrenkiella parvula HOM05D007408 ORTHO05D009325 4.2e-76 288.1 167 84.4
C07p34420 Brassica napus HOM05D007408 ORTHO05D009325 5.5e-76 287.7 166 84.3
A06p42710 Brassica napus HOM05D007408 ORTHO05D009325 2.7e-75 285.4 166 84.3
BcaC06g33976 Brassica carinata HOM05D007408 ORTHO05D009325 1.8e-74 282.7 166 83.1
AT3G25597 Arabidopsis thaliana HOM05D007408 ORTHO05D009325 3.7e-72 275.0 161 85.1
AL5G14110 Arabidopsis lyrata HOM05D007408 ORTHO05D009325 4.1e-71 271.6 160 84.4
BraA06t27184Z Brassica rapa HOM05D007408 ORTHO05D009325 4.1e-71 271.6 146 88.4
Thhalv10005058m.g Eutrema salsugineum HOM05D007408 ORTHO05D009325 1.7e-69 266.2 160 81.2
BcaC06g31130 Brassica carinata HOM05D007408 ORTHO05D009325 3.2e-68 261.9 144 86.1
BcaC03g17274 Brassica carinata HOM05D007408 ORTHO05D009325 1.2e-67 260.0 163 77.9
C02p52180 Brassica napus HOM05D007408 ORTHO05D009325 1.2e-67 260.0 163 77.9
BolC2t11303H Brassica oleracea HOM05D007408 ORTHO05D009325 1.2e-67 260.0 163 77.9
Carub.0005s0338 Capsella rubella HOM05D007408 ORTHO05D009325 4.6e-67 258.1 161 80.7
BraA02t08410Z Brassica rapa HOM05D007408 ORTHO05D009325 6.3e-64 247.7 146 80.8
BcaB07g30265 Brassica carinata HOM05D007408 ORTHO05D009325 8.2e-64 247.3 164 76.2
A02p33920 Brassica napus HOM05D007408 ORTHO05D009325 8.5e-61 237.3 142 79.6
BolC7t43970H Brassica oleracea HOM05D007408 ORTHO05D009325 3.5e-46 188.7 101 87.1
THA.LOC104805235 Tarenaya hassleriana HOM05D007408 ORTHO05D009325 3.0e-42 175.6 146 63.0
MD13G1050800 Malus domestica HOM05D007408 ORTHO05D009325 1.2e-22 110.5 145 46.2
Gorai.008G188700 Gossypium raimondii HOM05D007408 ORTHO05D009325 7.8e-22 107.8 159 42.8
Gohir.D12G176300 Gossypium hirsutum HOM05D007408 ORTHO05D009325 1.0e-21 107.5 159 42.1
Cfa008792 Carpinus fangiana HOM05D007408 ORTHO05D009325 1.3e-21 107.1 154 43.5
Sabra08G0084200 Salix brachista HOM05D007408 ORTHO05D009325 2.9e-21 105.9 141 46.1
Glyma.16G099500 Glycine max HOM05D007408 ORTHO05D009325 3.9e-21 105.5 151 39.7
Cpa.g.sc1.248 Carica papaya HOM05D007408 ORTHO05D009325 5.0e-21 105.1 116 48.3
RcHm_v2.0_Chr4g0436431 Rosa chinensis HOM05D007408 ORTHO05D009325 5.0e-21 105.1 146 46.6
Haze_11804 Corylus avellana HOM05D007408 ORTHO05D009325 3.3e-20 102.4 122 45.1
Atru.chr11.1432 Acer truncatum HOM05D007408 ORTHO05D009325 5.6e-20 101.7 153 41.8
Prupe.1G301300 Prunus persica HOM05D007408 ORTHO05D009325 5.6e-20 101.7 151 43.0
PGR119G0146 Punica granatum HOM05D007408 ORTHO05D009325 5.6e-20 101.7 149 40.3
Potri.008G111500 Populus trichocarpa HOM05D007408 ORTHO05D009325 9.5e-20 100.9 148 41.9
FAN17G1226 Fragaria x ananassa HOM05D000085 ORTHO05D000274 1.2e-19 100.5 140 49.3
Gohir.A12G173800 Gossypium hirsutum HOM05D007408 ORTHO05D009325 1.6e-19 100.1 154 39.0
Phvul.003G281600 Phaseolus vulgaris HOM05D007408 ORTHO05D009325 1.6e-19 100.1 149 42.3
Manes.06G075900 Manihot esculenta HOM05D007408 ORTHO05D009325 2.1e-19 99.8 128 45.3
Oeu024124.1 Olea europaea HOM05D007408 ORTHO05D009325 2.1e-19 99.8 167 39.5
FAN22G2286 Fragaria x ananassa HOM05D000227 ORTHO05D001491 2.8e-19 99.4 143 48.3
FAN12G0389 Fragaria x ananassa HOM05D000085 ORTHO05D000274 3.6e-19 99.0 139 48.9
FAN07G2148 Fragaria x ananassa HOM05D000085 ORTHO05D000274 6.1e-19 98.2 148 46.6
THA.LOC104822179 Tarenaya hassleriana HOM05D007408 ORTHO05D009325 8.0e-19 97.8 129 44.2
Cc11_g10990 Coffea canephora HOM05D007408 ORTHO05D009325 1.0e-18 97.4 146 41.8
SGA_v2.0_scaffold36G14509 Striga asiatica HOM05D007408 ORTHO05D009325 1.8e-18 96.7 134 41.8
Solyc05g010130.1 Solanum lycopersicum HOM05D007408 ORTHO05D009325 2.3e-18 96.3 166 36.7
TWI79G0837 Tripterygium wilfordii HOM05D007408 ORTHO05D009325 2.3e-18 96.3 149 40.3
DCAR_026703 Daucus carota HOM05D002818 ORTHO05D003244 3.1e-18 95.9 131 39.7
Eucgr.B03072 Eucalyptus grandis HOM05D007408 ORTHO05D009325 2.0e-17 93.2 152 38.8
Lj4g0027659 Lotus japonicus HOM05D007408 ORTHO05D009325 2.0e-17 93.2 149 39.6
CiPaw.06G098200 Carya illinoinensis HOM05D007408 ORTHO05D009325 3.4e-17 92.4 161 41.0
CANSAT64G2960 Cannabis sativa HOM05D007408 ORTHO05D009325 2.2e-16 89.7 147 40.1
VMungo0251G2162 Vigna mungo HOM05D007408 ORTHO05D009325 2.2e-16 89.7 125 42.4
HanXRQChr17g0551421 Helianthus annuus HOM05D007408 ORTHO05D009325 3.7e-16 89.0 124 42.7
TAR629G0610 Trochodendron aralioides HOM05D007408 ORTHO05D009325 1.4e-15 87.0 153 37.9
CARHR061510 Cardamine hirsuta HOM05D007408 ORTHO05D009325 1.9e-15 86.7 116 36.2
Lalb_Chr20g0122411 Lupinus albus HOM05D007408 ORTHO05D009325 1.9e-15 86.7 127 40.9
TPR.G24816 Trifolium pratense HOM05D007408 ORTHO05D009325 1.9e-15 86.7 166 37.3
AL1G39610 Arabidopsis lyrata HOM05D007408 ORTHO05D009325 2.4e-15 86.3 114 40.4
Thecc.02G364900 Theobroma cacao HOM05D007408 ORTHO05D009325 2.4e-15 86.3 127 44.1
Lsat_1_v5_gn_3_60200 Lactuca sativa HOM05D007408 ORTHO05D009325 3.2e-15 85.9 121 42.1
SalBow8G1270 Salvia bowleyana HOM05D007408 ORTHO05D009325 3.2e-15 85.9 152 38.2
SalBow8G3082 Salvia bowleyana HOM05D007408 ORTHO05D009325 3.2e-15 85.9 152 38.2
Sp5g23800 Schrenkiella parvula HOM05D007408 ORTHO05D009325 7.0e-15 84.7 144 34.7
A08p27160 Brassica napus HOM05D007408 ORTHO05D009325 9.2e-15 84.3 115 42.6
Migut.L01119 Erythranthe guttata HOM05D007408 ORTHO05D009325 1.6e-14 83.6 136 39.0
C03p72700 Brassica napus HOM05D007408 ORTHO05D009325 3.5e-14 82.4 115 42.6
BolC3t19568H Brassica oleracea HOM05D007408 ORTHO05D009325 3.5e-14 82.4 115 42.6
Ah.02g127260 Amaranthus hybridus HOM05D007408 ORTHO05D009325 4.6e-14 82.0 185 30.8
AT1G26140 Arabidopsis thaliana HOM05D007408 ORTHO05D009325 4.6e-14 82.0 116 40.5
arahy.Tifrunner.gnm1.ann1.24G1QJ Arachis hypogaea HOM05D007408 ORTHO05D009325 4.6e-14 82.0 144 34.0
HanXRQChr15g0475971 Helianthus annuus HOM05D007408 ORTHO05D009325 4.6e-14 82.0 120 41.7
BcaB03g15446 Brassica carinata HOM05D007408 ORTHO05D009325 1.3e-13 80.5 145 33.8
A09p39710 Brassica napus HOM05D007408 ORTHO05D009325 1.3e-13 80.5 112 40.2
BraA08t34661Z Brassica rapa HOM05D007408 ORTHO05D009325 1.3e-13 80.5 112 40.2
BraA09t39470Z Brassica rapa HOM05D007408 ORTHO05D009325 1.3e-13 80.5 112 40.2
C06p41170 Brassica napus HOM05D000085 ORTHO05D000274 1.7e-13 80.1 165 29.7
Ciclev10033573m.g Citrus clementina HOM05D007408 ORTHO05D009325 1.7e-13 80.1 111 39.6
Medtr8g069910 Medicago truncatula HOM05D007408 ORTHO05D009325 1.7e-13 80.1 143 37.8
AT1G68700 Arabidopsis thaliana HOM05D007408 ORTHO05D009325 2.3e-13 79.7 117 37.6
BcaC08g46321 Brassica carinata HOM05D000085 ORTHO05D000274 2.3e-13 79.7 165 29.1
BolC6t39308H Brassica oleracea HOM05D000085 ORTHO05D000274 2.3e-13 79.7 165 29.1
BcaB03g15828 Brassica carinata HOM05D007408 ORTHO05D009325 3.9e-13 79.0 116 35.3
CsaV3_2G010890 Cucumis sativus L. HOM05D007408 ORTHO05D009325 6.6e-13 78.2 144 36.1
A07p35100 Brassica napus HOM05D000085 ORTHO05D000274 8.6e-13 77.8 147 33.3
BraA07t31103Z Brassica rapa HOM05D000085 ORTHO05D000274 8.6e-13 77.8 147 33.3
Sc11g0002930 Simmondsia chinensis HOM05D007408 ORTHO05D009325 8.6e-13 77.8 149 38.3
Thhalv10009687m.g Eutrema salsugineum HOM05D007408 ORTHO05D009325 1.1e-12 77.4 123 39.0
Carub.0001s2482 Capsella rubella HOM05D007408 ORTHO05D009325 1.5e-12 77.0 114 38.6
Sp1g22520 Schrenkiella parvula HOM05D007408 ORTHO05D009325 1.5e-12 77.0 115 41.7
C06p37420 Brassica napus HOM05D007408 ORTHO05D009325 2.5e-12 76.3 128 35.9
CARHR025780 Cardamine hirsuta HOM05D007408 ORTHO05D009325 2.5e-12 76.3 113 38.9
BraA07t30814Z Brassica rapa HOM05D007408 ORTHO05D009325 4.3e-12 75.5 111 36.9
A07p31850 Brassica napus HOM05D007408 ORTHO05D009325 5.6e-12 75.1 111 36.9
BcaC05g26429 Brassica carinata HOM05D007408 ORTHO05D009325 9.5e-12 74.3 117 39.3
C05p24760 Brassica napus HOM05D007408 ORTHO05D009325 9.5e-12 74.3 117 39.3
PSO782G1144 Papaver somniferum HOM05D007408 ORTHO05D009325 8.0e-11 71.2 141 36.2
Psat4g113200 Pisum sativum HOM05D007408 ORTHO05D009325 8.0e-11 71.2 145 35.2
HanXRQChr12g0365241 Helianthus annuus HOM05D007408 ORTHO05D009325 1.4e-10 70.5 131 36.6
Carub.0002s1524 Capsella rubella HOM05D007408 ORTHO05D009325 3.1e-10 69.3 105 35.2
BolC6t38845H Brassica oleracea HOM05D000085 ORTHO05D000274 3.4e-09 65.9 121 34.7
Manes.14G095101 Manihot esculenta HOM05D007408 ORTHO05D009325 3.4e-09 65.9 56 55.4
Aqoxy3G03838 Aquilegia oxysepala HOM05D007408 ORTHO05D009325 1.3e-08 63.9 169 30.8
Sed0018728 Sechium edule HOM05D007408 ORTHO05D009325 2.2e-08 63.2 119 37.0
MELO3C020393.2 Cucumis melo HOM05D007408 ORTHO05D009325 4.9e-08 62.0 145 31.7
BcaC08g43155 Brassica carinata HOM05D007408 ORTHO05D009325 1.4e-07 60.5 112 36.6
HPP92_003100 Vanilla planifolia HOM05D007408 ORTHO05D009325 1.9e-07 60.1 43 60.5
HPP92_003114 Vanilla planifolia HOM05D007408 ORTHO05D009325 1.9e-07 60.1 113 35.4
PSO063G0414 Papaver somniferum HOM05D007408 ORTHO05D009325 7.1e-07 58.2 143 34.3


User provided reference genes

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