Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR145770 Cardamine hirsuta HOM05D006591 ORTHO05D007861 9.5e-40 167.9 246 100.0
AL5G13180 Arabidopsis lyrata HOM05D006591 ORTHO05D007861 7.3e-32 141.7 110 89.1
AT2G03430 Arabidopsis thaliana HOM05D006591 ORTHO05D007861 6.2e-31 138.7 246 94.3
Carub.0005s0239 Capsella rubella HOM05D006591 ORTHO05D007861 3.1e-30 136.3 110 85.5
Sp2g14340 Schrenkiella parvula HOM05D006591 ORTHO05D007861 9.9e-29 131.3 114 83.3
BraA09t38037Z Brassica rapa HOM05D006591 ORTHO05D007861 4.9e-28 129.0 114 78.9
BcaC04g21487 Brassica carinata HOM05D006591 ORTHO05D007861 1.1e-27 127.9 114 63.2
C09p31230 Brassica napus HOM05D006591 ORTHO05D007861 1.1e-27 127.9 114 63.2
BolC9t55979H Brassica oleracea HOM05D006591 ORTHO05D007861 1.1e-27 127.9 114 63.2
A09p24440 Brassica napus HOM05D006591 ORTHO05D007861 4.2e-27 125.9 114 78.1
BcaB07g30669 Brassica carinata HOM05D006591 ORTHO05D007861 5.4e-27 125.6 115 80.0
Thhalv10004832m.g Eutrema salsugineum HOM05D006591 ORTHO05D007861 2.1e-26 123.6 115 61.7
THA.LOC104801815 Tarenaya hassleriana HOM05D006591 ORTHO05D007861 6.4e-20 102.1 114 67.5
Aa31LG2G7160 Aethionema arabicum HOM05D006961 ORTHO05D008809 8.4e-20 101.7 110 65.5
TWI75G0359 Tripterygium wilfordii HOM05D006591 ORTHO05D007861 5.4e-19 99.0 114 63.2
Sopen05g007420 Solanum pennellii HOM05D006591 ORTHO05D007861 9.3e-19 98.2 105 66.7
Cfa008903 Carpinus fangiana HOM05D006591 ORTHO05D007861 1.6e-18 97.4 114 65.8
QL03p070967 Quercus lobata HOM05D006591 ORTHO05D007861 4.6e-18 95.9 114 46.5
Solyc05g012590.4 Solanum lycopersicum HOM05D006591 ORTHO05D007861 6.0e-18 95.5 105 51.4
Manes.05G107800 Manihot esculenta HOM05D006591 ORTHO05D007861 7.9e-18 95.1 110 65.5
Thecc.02G335700 Theobroma cacao HOM05D006591 ORTHO05D007861 2.3e-17 93.6 74 66.2
Atru.chr11.1685 Acer truncatum HOM05D006591 ORTHO05D007861 3.0e-17 93.2 81 56.8
TWI79G1606 Tripterygium wilfordii HOM05D006591 ORTHO05D007861 3.0e-17 93.2 110 59.1
CANSAT64G0984 Cannabis sativa HOM05D006591 ORTHO05D007861 5.1e-17 92.4 81 58.0
Medtr5g043640 Medicago truncatula HOM05D006591 ORTHO05D007861 5.1e-17 92.4 81 60.5
PGSC0003DMG400028326 Solanum tuberosum HOM05D006591 ORTHO05D007861 5.1e-17 92.4 105 64.8
Phvul.002G068900 Phaseolus vulgaris HOM05D006591 ORTHO05D007861 6.7e-17 92.0 114 43.9
Psat2g128080 Pisum sativum HOM05D006591 ORTHO05D007861 6.7e-17 92.0 114 59.6
Lalb_Chr10g0098581 Lupinus albus HOM05D006591 ORTHO05D007861 8.7e-17 91.7 83 57.8
Hund25197 Selenicereus undatus HOM05D006591 ORTHO05D007861 8.7e-17 91.7 113 46.9
CAN.G1340.9 Capsicum annuum HOM05D006591 ORTHO05D007861 1.9e-16 90.5 102 62.7
Dinv16706 Davidia involucrata HOM05D006591 ORTHO05D007861 1.9e-16 90.5 79 63.3
Cc11_g12350 Coffea canephora HOM05D006591 ORTHO05D007861 4.3e-16 89.4 113 46.9
TAR374G1558 Trochodendron aralioides HOM05D006591 ORTHO05D007861 4.3e-16 89.4 116 62.9
Lj3C1032T3 Lonicera japonica HOM05D006591 ORTHO05D007861 5.6e-16 89.0 75 65.3
Duzib268G0337 Durio zibethinus HOM05D006591 ORTHO05D007861 7.4e-16 88.6 73 64.4
Eucgr.G02461 Eucalyptus grandis HOM05D006591 ORTHO05D007861 7.4e-16 88.6 77 61.0
CiPaw.06G090100 Carya illinoinensis HOM05D006591 ORTHO05D007861 1.6e-15 87.4 81 58.0
Lj2g0025600 Lotus japonicus HOM05D006591 ORTHO05D007861 1.6e-15 87.4 82 54.9
PSO017G3262 Papaver somniferum HOM05D006591 ORTHO05D007861 1.6e-15 87.4 78 56.4
GSVIVG01012181001 Vitis vinifera HOM05D006591 ORTHO05D007861 1.6e-15 87.4 107 58.9
Potri.010G161300 Populus trichocarpa HOM05D006591 ORTHO05D007861 2.1e-15 87.0 81 54.3
CSS0002938 Camellia sinensis var. sinensis HOM05D006591 ORTHO05D007861 4.8e-15 85.9 83 56.6
CSS0020090 Camellia sinensis var. sinensis HOM05D006591 ORTHO05D007861 4.8e-15 85.9 83 56.6
MELO3C002930.2 Cucumis melo HOM05D006591 ORTHO05D007861 4.8e-15 85.9 114 44.7
DCAR_027452 Daucus carota HOM05D006591 ORTHO05D007861 4.8e-15 85.9 114 57.9
Nn4g23331 Nelumbo nucifera HOM05D006591 ORTHO05D007861 4.8e-15 85.9 112 59.8
Sabra10G0122800 Salix brachista HOM05D006591 ORTHO05D007861 4.8e-15 85.9 81 56.8
Cpa.g.sc1.95 Carica papaya HOM05D006591 ORTHO05D007861 8.1e-15 85.1 110 41.8
Ca_04911_v3 Cicer arietinum L. HOM05D006591 ORTHO05D007861 8.1e-15 85.1 77 57.1
TPR.G2283 Trifolium pratense HOM05D006591 ORTHO05D007861 8.1e-15 85.1 103 46.6
CSS0024373 Camellia sinensis var. sinensis HOM05D006591 ORTHO05D007861 1.1e-14 84.7 83 56.6
TPR.G24426 Trifolium pratense HOM05D006591 ORTHO05D007861 1.1e-14 84.7 70 61.4
arahy.Tifrunner.gnm1.ann1.09DLU7 Arachis hypogaea HOM05D006591 ORTHO05D007861 1.4e-14 84.3 81 56.8
CSS0029304 Camellia sinensis var. sinensis HOM05D006591 ORTHO05D007861 1.4e-14 84.3 83 55.4
CSS0032544 Camellia sinensis var. sinensis HOM05D006591 ORTHO05D007861 1.4e-14 84.3 83 55.4
VMungo1215G0675 Vigna mungo HOM05D006591 ORTHO05D007861 1.4e-14 84.3 77 55.8
Actinidia19919 Actinidia chinensis HOM05D006591 ORTHO05D007861 1.8e-14 84.0 116 43.1
COL.COLO4_05797 Corchorus olitorius HOM05D006591 ORTHO05D007861 1.8e-14 84.0 66 62.1
Ciclev10032613m.g Citrus clementina HOM05D006591 ORTHO05D007861 2.4e-14 83.6 66 62.1
Glyma.02G113900 Glycine max HOM05D006591 ORTHO05D007861 2.4e-14 83.6 114 46.5
Peaxi162Scf00314g00027 Petunia axillaris HOM05D006591 ORTHO05D007861 3.1e-14 83.2 98 57.1
CsaV3_5G025480 Cucumis sativus L. HOM05D006591 ORTHO05D007861 4.0e-14 82.8 81 55.6
Glyma.01G055500 Glycine max HOM05D006591 ORTHO05D007861 4.0e-14 82.8 81 54.3
Aqoxy3G00449 Aquilegia oxysepala HOM05D006591 ORTHO05D007861 5.3e-14 82.4 99 65.7
RcHm_v2.0_Chr4g0438821 Rosa chinensis HOM05D006591 ORTHO05D007861 5.3e-14 82.4 100 68.0
Gohir.D05G306200 Gossypium hirsutum HOM05D006591 ORTHO05D007861 6.9e-14 82.0 69 59.4
C06p01310 Brassica napus HOM05D006591 ORTHO05D007861 9.0e-14 81.6 82 62.2
Haze_11932 Corylus avellana HOM05D006591 ORTHO05D007861 9.0e-14 81.6 140 39.3
MD13G1065800 Malus domestica HOM05D006591 ORTHO05D007861 9.0e-14 81.6 110 61.8
Prupe.1G282400 Prunus persica HOM05D006591 ORTHO05D007861 1.2e-13 81.3 81 51.9
PGR119G1238 Punica granatum HOM05D006591 ORTHO05D007861 1.2e-13 81.3 114 40.4
EL10Ac6g14958 Beta vulgaris HOM05D006591 ORTHO05D007861 1.5e-13 80.9 103 59.2
vmacro16368 Vaccinium macrocarpon HOM05D006591 ORTHO05D007861 1.5e-13 80.9 103 47.6
BcaC02g07876 Brassica carinata HOM05D006591 ORTHO05D007861 2.6e-13 80.1 81 61.7
Gorai.009G326200 Gossypium raimondii HOM05D006591 ORTHO05D007861 2.6e-13 80.1 66 59.1
Actinidia31944 Actinidia chinensis HOM05D006591 ORTHO05D007861 3.4e-13 79.7 114 42.1
Gohir.A05G306200 Gossypium hirsutum HOM05D006591 ORTHO05D007861 3.4e-13 79.7 69 56.5
Rhsim12G0134100 Rhododendron simsii HOM05D006591 ORTHO05D007861 3.4e-13 79.7 73 57.5
arahy.Tifrunner.gnm1.ann1.74ATFD Arachis hypogaea HOM05D006591 ORTHO05D007861 4.5e-13 79.3 114 43.0
ECA246G1963 Erigeron canadensis HOM05D006591 ORTHO05D007861 7.6e-13 78.6 110 57.3
MD16G1064400 Malus domestica HOM05D006591 ORTHO05D007861 9.9e-13 78.2 110 61.8
Oeu028261.1 Olea europaea HOM05D006591 ORTHO05D007861 1.7e-12 77.4 73 53.4
HanXRQChr17g0545461 Helianthus annuus HOM05D006591 ORTHO05D007861 2.2e-12 77.0 115 52.2
Sc11g0002290 Simmondsia chinensis HOM05D006591 ORTHO05D007861 2.9e-12 76.6 114 54.4
Migut.E00061 Erythranthe guttata HOM05D006591 ORTHO05D007861 4.9e-12 75.9 102 64.7
FAN17G0139 Fragaria x ananassa HOM05D006591 ORTHO05D007861 4.9e-12 75.9 100 64.0
PSO478G2874 Papaver somniferum HOM05D006591 ORTHO05D007861 4.9e-12 75.9 77 54.5
SGA_v2.0_scaffold287G47153 Striga asiatica HOM05D006591 ORTHO05D007861 4.9e-12 75.9 99 65.7
CDE07G0054 Ceratophyllum demersum HOM05D006591 ORTHO05D007861 8.4e-12 75.1 77 49.4
FAN12G1471 Fragaria x ananassa HOM05D006591 ORTHO05D007861 1.4e-11 74.3 100 63.0
Lsat_1_v5_gn_3_56260 Lactuca sativa HOM05D006591 ORTHO05D007861 1.4e-11 74.3 107 59.8
MSTRG.2323 Avicennia marina HOM05D006591 ORTHO05D007861 2.4e-11 73.6 102 59.8
FvH4_4g30470 Fragaria vesca HOM05D006591 ORTHO05D007861 2.4e-11 73.6 100 63.0
FAN07G2187 Fragaria x ananassa HOM05D006591 ORTHO05D007861 3.2e-11 73.2 67 55.2
FAN22G1196 Fragaria x ananassa HOM05D006591 ORTHO05D007861 9.3e-11 71.6 100 62.0
unitig_22.g5555 Utricularia gibba HOM05D006591 ORTHO05D007861 2.7e-10 70.1 64 51.6
Ah.02g126600 Amaranthus hybridus HOM05D006591 ORTHO05D007861 6.0e-10 68.9 61 62.3
Mapoly0001s0139 Marchantia polymorpha HOM05D006591 ORTHO05D007861 7.9e-10 68.6 58 58.6
HPP92_018457 Vanilla planifolia HOM05D006591 ORTHO05D007861 1.3e-09 67.8 77 46.8
CSS0029980 Camellia sinensis var. sinensis HOM05D006591 ORTHO05D007861 2.3e-09 67.0 82 51.2
C04p62430 Brassica napus HOM05D006591 ORTHO05D007861 3.9e-09 66.2 52 71.2
BolC4t27718H Brassica oleracea HOM05D006591 ORTHO05D007861 3.9e-09 66.2 52 71.2
Sed0000747 Sechium edule HOM05D006591 ORTHO05D007861 6.7e-09 65.5 48 66.7
SEGI_35394 Sequoiadendron giganteum HOM05D006591 ORTHO05D007861 5.6e-08 62.4 62 54.8
Nitab4.5_0000334g0240 Nicotiana tabacum HOM05D006591 ORTHO05D007861 1.6e-07 60.8 101 40.6
ATR0111G005 Amborella trichopoda HOM05D006591 ORTHO05D007861 2.8e-07 60.1 64 46.9
Zm00001eb214530 Zea mays HOM05D006591 ORTHO05D007861 4.8e-07 59.3 105 60.0
AagrBONN_evm.TU.Sc2ySwM_344.1136 Anthoceros agrestis HOM05D006591 ORTHO05D007861 8.1e-07 58.5 54 55.6
EL10Ac6g14964 Beta vulgaris HOM05D027931 ORTHO05D007861 8.1e-07 58.5 63 49.2
CBR_g23768 Chara braunii HOM05D006591 ORTHO05D007861 1.4e-06 57.8 66 43.9


User provided reference genes

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