Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR144850 Cardamine hirsuta HOM05D000222 ORTHO05D004962 1.7e-42 175.6 93 100.0
CARHR015270 Cardamine hirsuta HOM05D000222 ORTHO05D004962 1.1e-17 93.2 55 94.5
AL1G26750 Arabidopsis lyrata HOM05D000222 ORTHO05D004962 2.5e-17 92.0 55 92.7
AT1G14740 Arabidopsis thaliana HOM05D000222 ORTHO05D004962 2.5e-17 92.0 55 92.7
Thhalv10006891m.g Eutrema salsugineum HOM05D000222 ORTHO05D004962 2.5e-17 92.0 55 92.7
BcaB02g06545 Brassica carinata HOM05D000222 ORTHO05D004962 1.2e-16 89.7 55 90.9
A06p10790 Brassica napus HOM05D000222 ORTHO05D004962 1.2e-16 89.7 55 90.9
BraA06t24257Z Brassica rapa HOM05D000222 ORTHO05D004962 1.2e-16 89.7 55 90.9
Sp1g13180 Schrenkiella parvula HOM05D000222 ORTHO05D004962 1.2e-16 89.7 55 90.9
Carub.0001s1452 Capsella rubella HOM05D000222 ORTHO05D004962 3.6e-16 88.2 54 90.7
BcaC05g25393 Brassica carinata HOM05D000222 ORTHO05D004962 4.7e-16 87.8 55 89.1
C05p12690 Brassica napus HOM05D000222 ORTHO05D004962 4.7e-16 87.8 55 89.1
BolC5t30012H Brassica oleracea HOM05D000222 ORTHO05D004962 4.7e-16 87.8 55 89.1
BcaC07g38759 Brassica carinata HOM05D000222 ORTHO05D004962 8.1e-16 87.0 55 87.3
C08p16900 Brassica napus HOM05D000222 ORTHO05D004962 8.1e-16 87.0 55 87.3
BolC8t49317H Brassica oleracea HOM05D000222 ORTHO05D004962 8.1e-16 87.0 55 87.3
BcaB03g13083 Brassica carinata HOM05D000222 ORTHO05D004962 1.1e-15 86.7 55 87.3
THA.LOC104805095 Tarenaya hassleriana HOM05D000222 ORTHO05D004962 1.5e-14 82.8 55 83.6
Aa31LG1G350 Aethionema arabicum HOM05D000222 ORTHO05D004962 1.7e-13 79.3 62 74.2
Aqoxy3G04105 Aquilegia oxysepala HOM05D000222 ORTHO05D004962 1.9e-12 75.9 55 76.4
Cpa.g.sc2.140 Carica papaya HOM05D000222 ORTHO05D004962 3.2e-12 75.1 55 74.5
Eucgr.B02662 Eucalyptus grandis HOM05D000222 ORTHO05D004962 4.2e-12 74.7 55 74.5
PSO782G4980 Papaver somniferum HOM05D000222 ORTHO05D004962 4.2e-12 74.7 54 75.9
PSO063G5028 Papaver somniferum HOM05D000222 ORTHO05D004962 5.4e-12 74.3 54 75.9
Cfa015061 Carpinus fangiana HOM05D000222 ORTHO05D004962 7.1e-12 73.9 55 74.5
Manes.17G086800 Manihot esculenta HOM05D000222 ORTHO05D004962 7.1e-12 73.9 55 72.7
QL03p038766 Quercus lobata HOM05D000222 ORTHO05D004962 9.3e-12 73.6 52 76.9
Migut.E00527 Erythranthe guttata HOM05D000222 ORTHO05D004962 1.2e-11 73.2 55 70.9
MSTRG.13646 Avicennia marina HOM05D000222 ORTHO05D004962 1.6e-11 72.8 55 72.7
CANSAT78G2041 Cannabis sativa HOM05D000222 ORTHO05D004962 1.6e-11 72.8 55 72.7
Haze_10830 Corylus avellana HOM05D000222 ORTHO05D004962 2.1e-11 72.4 55 72.7
Oeu044992.1 Olea europaea HOM05D000222 ORTHO05D004962 2.1e-11 72.4 55 70.9
SGA_v2.0_scaffold65G22111 Striga asiatica HOM05D000222 ORTHO05D004962 2.1e-11 72.4 54 75.9
CiPaw.05G188400 Carya illinoinensis HOM05D000222 ORTHO05D004962 2.7e-11 72.0 55 72.7
Dinv14377 Davidia involucrata HOM05D000222 ORTHO05D004962 2.7e-11 72.0 55 74.5
Manes.15G137700 Manihot esculenta HOM05D000222 ORTHO05D004962 2.7e-11 72.0 55 72.7
Prupe.1G336600 Prunus persica HOM05D000222 ORTHO05D004962 2.7e-11 72.0 55 74.5
Dinv05676 Davidia involucrata HOM05D000222 ORTHO05D004962 3.5e-11 71.6 55 74.5
Solyc05g018500.3 Solanum lycopersicum HOM05D000222 ORTHO05D004962 3.5e-11 71.6 55 74.5
PGSC0003DMG400027429 Solanum tuberosum HOM05D000222 ORTHO05D004962 3.5e-11 71.6 55 74.5
Gohir.A13G029500 Gossypium hirsutum HOM05D000222 ORTHO05D004962 4.6e-11 71.2 55 72.7
Gohir.D13G027800 Gossypium hirsutum HOM05D000222 ORTHO05D004962 4.6e-11 71.2 55 72.7
Gorai.013G031700 Gossypium raimondii HOM05D000222 ORTHO05D004962 4.6e-11 71.2 55 72.7
Nitab4.5_0003878g0010 Nicotiana tabacum HOM05D000222 ORTHO05D004962 4.6e-11 71.2 55 74.5
Sabra08G0105200 Salix brachista HOM05D000222 ORTHO05D004962 4.6e-11 71.2 55 69.1
Peaxi162Scf00937g00112 Petunia axillaris HOM05D000222 ORTHO05D004962 6.0e-11 70.9 55 72.7
Rhsim09G0086600 Rhododendron simsii HOM05D000222 ORTHO05D004962 6.0e-11 70.9 55 72.7
Sopen05g015580 Solanum pennellii HOM05D000222 ORTHO05D004962 7.8e-11 70.5 55 72.7
Thecc.02G305400 Theobroma cacao HOM05D000222 ORTHO05D004962 7.8e-11 70.5 55 70.9
Nitab4.5_0013820g0010 Nicotiana tabacum HOM05D000222 ORTHO05D004962 1.0e-10 70.1 55 72.7
Atru.chr11.750 Acer truncatum HOM05D000222 ORTHO05D004962 1.3e-10 69.7 55 70.9
CSS0002438 Camellia sinensis var. sinensis HOM05D000222 ORTHO05D004962 1.3e-10 69.7 55 70.9
Cc11_g05940 Coffea canephora HOM05D000222 ORTHO05D004962 1.7e-10 69.3 55 70.9
MBI19_g10908_MAGBIO Magnolia biondii HOM05D000222 ORTHO05D004962 1.7e-10 69.3 55 72.7
MD13G1016800 Malus domestica HOM05D000222 ORTHO05D004962 1.7e-10 69.3 55 70.9
RcHm_v2.0_Chr4g0442161 Rosa chinensis HOM05D000222 ORTHO05D004962 2.3e-10 68.9 52 71.2
Actinidia12434 Actinidia chinensis HOM05D000222 ORTHO05D004962 3.9e-10 68.2 55 70.9
Hma1.2p1_0037F.1_g023820 Hydrangea macrophylla HOM05D000222 ORTHO05D004962 3.9e-10 68.2 55 70.9
Actinidia20114 Actinidia chinensis HOM05D000222 ORTHO05D004962 5.1e-10 67.8 55 69.1
Lj6A732T72 Lonicera japonica HOM05D000222 ORTHO05D004962 5.1e-10 67.8 52 69.2
PGSC0003DMG400022774 Solanum tuberosum HOM05D000222 ORTHO05D004962 5.1e-10 67.8 55 65.5
TWI74G1486 Tripterygium wilfordii HOM05D000222 ORTHO05D004962 5.1e-10 67.8 55 65.5
CDE11G1150 Ceratophyllum demersum HOM05D000222 ORTHO05D004962 6.6e-10 67.4 55 65.5
COL.COLO4_27597 Corchorus olitorius HOM05D000222 ORTHO05D004962 6.6e-10 67.4 67 59.7
DCAR_023547 Daucus carota HOM05D000222 ORTHO05D004962 6.6e-10 67.4 55 67.3
Duzib248G1586 Durio zibethinus HOM05D000222 ORTHO05D004962 6.6e-10 67.4 55 67.3
Nn4g24491 Nelumbo nucifera HOM05D000222 ORTHO05D004962 6.6e-10 67.4 55 69.1
Oeu044073.1 Olea europaea HOM05D000222 ORTHO05D004962 1.5e-09 66.2 81 48.1
Sed0022559 Sechium edule HOM05D000222 ORTHO05D004962 1.9e-09 65.9 55 67.3
ATR0598G253 Amborella trichopoda HOM05D000222 ORTHO05D004962 2.5e-09 65.5 53 66.0
CiPaw.06G056800 Carya illinoinensis HOM05D000222 ORTHO05D004962 2.5e-09 65.5 55 67.3
CDE05G0510 Ceratophyllum demersum HOM05D000222 ORTHO05D004962 2.5e-09 65.5 55 63.6
Duzib251G0369 Durio zibethinus HOM05D000222 ORTHO05D004962 2.5e-09 65.5 55 67.3
MD16G1014700 Malus domestica HOM05D000222 ORTHO05D004962 2.5e-09 65.5 55 67.3
HPP92_004208 Vanilla planifolia HOM05D000222 ORTHO05D004962 2.5e-09 65.5 55 69.1
Ah.08g214190 Amaranthus hybridus HOM05D000222 ORTHO05D004962 3.3e-09 65.1 55 65.5
AUR62011848 Chenopodium quinoa HOM05D000222 ORTHO05D004962 3.3e-09 65.1 55 63.6
AUR62024691 Chenopodium quinoa HOM05D000222 ORTHO05D004962 3.3e-09 65.1 55 63.6
CsaV3_5G027810 Cucumis sativus L. HOM05D000222 ORTHO05D004962 3.3e-09 65.1 55 65.5
Lalb_Chr13g0293651 Lupinus albus HOM05D000222 ORTHO05D004962 3.3e-09 65.1 55 65.5
Potri.008G138100 Populus trichocarpa HOM05D000222 ORTHO05D004962 3.3e-09 65.1 55 63.6
Ciclev10014296m.g Citrus clementina HOM05D000222 ORTHO05D004962 5.6e-09 64.3 55 70.9
Lalb_Chr07g0187811 Lupinus albus HOM05D000222 ORTHO05D004962 5.6e-09 64.3 55 67.3
Hund22722 Selenicereus undatus HOM05D000222 ORTHO05D004962 5.6e-09 64.3 52 65.4
CAN.G647.5 Capsicum annuum HOM05D000222 ORTHO05D004962 7.3e-09 63.9 55 70.9
ClCG01G006740 Citrullus lanatus HOM05D000222 ORTHO05D004962 7.3e-09 63.9 55 63.6
Potri.010G102600 Populus trichocarpa HOM05D000222 ORTHO05D004962 7.3e-09 63.9 55 67.3
Actinidia34054 Actinidia chinensis HOM05D000222 ORTHO05D004962 9.6e-09 63.5 55 65.5
FAN22G0304 Fragaria x ananassa HOM05D000222 ORTHO05D004962 9.6e-09 63.5 51 70.6
Lj3A861T64 Lonicera japonica HOM05D000222 ORTHO05D004962 9.6e-09 63.5 54 66.7
Zm00001eb010160 Zea mays HOM05D000222 ORTHO05D004962 9.6e-09 63.5 55 61.8
Zm00001eb399110 Zea mays HOM05D000222 ORTHO05D004962 1.3e-08 63.2 55 61.8
MSTRG.2110 Avicennia marina HOM05D000222 ORTHO05D004962 1.6e-08 62.8 55 61.8
Os03g0239200 Oryza sativa ssp. japonica HOM05D000222 ORTHO05D004962 1.6e-08 62.8 55 61.8
EL10Ac6g14203 Beta vulgaris HOM05D000222 ORTHO05D004962 2.1e-08 62.4 55 61.8
Hma1.2p1_1450F.1_g284240 Hydrangea macrophylla HOM05D000222 ORTHO05D004962 2.1e-08 62.4 55 61.8
AUR62024692 Chenopodium quinoa HOM05D000222 ORTHO05D004962 2.8e-08 62.0 73 50.7
DCAR_030303 Daucus carota HOM05D000222 ORTHO05D004962 2.8e-08 62.0 54 64.8
FvH4_4g33110 Fragaria vesca HOM05D000222 ORTHO05D004962 2.8e-08 62.0 51 68.6
FAN07G1810 Fragaria x ananassa HOM05D000222 ORTHO05D004962 2.8e-08 62.0 51 68.6
FAN12G2155 Fragaria x ananassa HOM05D000222 ORTHO05D004962 2.8e-08 62.0 51 68.6
unitig_52.g17291 Utricularia gibba HOM05D000222 ORTHO05D004962 2.8e-08 62.0 55 61.8
ECA234G2546 Erigeron canadensis HOM05D000222 ORTHO05D004962 3.6e-08 61.6 55 60.0
Lj2g0002621 Lotus japonicus HOM05D000222 ORTHO05D004962 3.6e-08 61.6 50 70.0
Phvul.003G014700 Phaseolus vulgaris HOM05D000222 ORTHO05D004962 4.8e-08 61.2 55 63.6
VMungo1215G2627 Vigna mungo HOM05D000222 ORTHO05D004962 4.8e-08 61.2 55 63.6
arahy.Tifrunner.gnm1.ann1.EPT9JX Arachis hypogaea HOM05D000222 ORTHO05D004962 6.2e-08 60.8 55 65.5
arahy.Tifrunner.gnm1.ann1.J9EPM7 Arachis hypogaea HOM05D000222 ORTHO05D004962 6.2e-08 60.8 55 65.5
FAN17G0744 Fragaria x ananassa HOM05D000222 ORTHO05D004962 8.1e-08 60.5 51 68.6
Glyma.20G012600 Glycine max HOM05D000222 ORTHO05D004962 1.4e-07 59.7 55 60.0
Sed0000815 Sechium edule HOM05D000222 ORTHO05D004962 1.8e-07 59.3 55 61.8
Glyma.05G138900 Glycine max HOM05D000222 ORTHO05D004962 3.1e-07 58.5 55 61.8
Glyma.08G094100 Glycine max HOM05D000222 ORTHO05D004962 3.1e-07 58.5 55 61.8
Phvul.002G182200 Phaseolus vulgaris HOM05D000222 ORTHO05D004962 4.0e-07 58.2 55 60.0
VMungo0251G0007 Vigna mungo HOM05D000222 ORTHO05D004962 4.0e-07 58.2 55 60.0
SHI04273 Sapria himalayana HOM05D000222 ORTHO05D004962 5.3e-07 57.8 48 62.5
PGSC0003DMG400022773 Solanum tuberosum HOM05D000222 ORTHO05D004962 6.9e-07 57.4 55 60.0
MBI04_g34431_MAGBIO Magnolia biondii HOM05D000222 ORTHO05D007489 1.5e-06 56.2 53 58.5
TAR623G1053 Trochodendron aralioides HOM05D000222 ORTHO05D007489 2.0e-06 55.8 54 59.3
Ca_11582_v3 Cicer arietinum L. HOM05D000222 ORTHO05D004962 3.4e-06 55.1 55 58.2
Ca_18180_v3 Cicer arietinum L. HOM05D000222 ORTHO05D004962 3.4e-06 55.1 55 58.2
Hund22022 Selenicereus undatus HOM05D000222 ORTHO05D007489 4.4e-06 54.7 53 60.4
TPR.G5124 Trifolium pratense HOM05D000222 ORTHO05D004962 4.4e-06 54.7 55 58.2
HanXRQChr16g0524451 Helianthus annuus HOM05D000222 ORTHO05D007489 7.6e-06 53.9 51 58.8
Lj4g0012229 Lotus japonicus HOM05D000222 ORTHO05D004962 7.6e-06 53.9 55 56.4


User provided reference genes

Program Settings