Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR144420 Cardamine hirsuta HOM05D006770 ORTHO05D008356 2.3e-263 911.8 476 100.0
AL5G10970 Arabidopsis lyrata HOM05D006770 ORTHO05D008356 3.3e-238 828.2 477 90.6
Carub.0005s0082 Capsella rubella HOM05D006770 ORTHO05D008356 2.0e-235 818.9 478 90.6
AT2G01860 Arabidopsis thaliana HOM05D006770 ORTHO05D008356 1.3e-234 816.2 478 90.2
Sp2g13280 Schrenkiella parvula HOM05D006770 ORTHO05D008356 1.7e-223 779.2 481 85.0
Thhalv10004104m.g Eutrema salsugineum HOM05D006770 ORTHO05D008356 1.6e-221 772.7 480 84.4
BcaC06g31269 Brassica carinata HOM05D006770 ORTHO05D008356 2.9e-202 708.8 475 78.3
BraA06t27272Z Brassica rapa HOM05D006770 ORTHO05D008356 4.6e-200 701.4 475 78.9
BcaC06g34103 Brassica carinata HOM05D006770 ORTHO05D008356 1.5e-198 696.4 475 77.7
BolC7t43787H Brassica oleracea HOM05D006770 ORTHO05D008356 5.7e-198 694.5 476 77.3
A06p43970 Brassica napus HOM05D006770 ORTHO05D008356 9.7e-198 693.7 475 76.6
C07p32660 Brassica napus HOM05D006770 ORTHO05D008356 1.6e-197 693.0 476 77.5
Aa31LG2G8050 Aethionema arabicum HOM05D006770 ORTHO05D008356 2.6e-195 685.6 487 75.6
THA.LOC104813750 Tarenaya hassleriana HOM05D006770 ORTHO05D008356 1.6e-176 623.2 480 69.6
QL02p014697 Quercus lobata HOM05D006770 ORTHO05D008356 1.0e-151 540.8 483 59.8
Atru.chr13.120 Acer truncatum HOM05D006770 ORTHO05D008356 1.2e-150 537.3 459 61.4
PSO541G3292 Papaver somniferum HOM05D006770 ORTHO05D008356 3.3e-145 519.2 481 58.8
PSO675G2016 Papaver somniferum HOM05D006770 ORTHO05D008356 4.3e-145 518.8 480 58.8
Ciclev10000935m.g Citrus clementina HOM05D006770 ORTHO05D008356 3.6e-144 515.8 485 58.1
Duzib041G0267 Durio zibethinus HOM05D006770 ORTHO05D008356 3.6e-144 515.8 450 60.0
Potri.005G252300 Populus trichocarpa HOM05D006770 ORTHO05D008356 8.0e-144 514.6 481 58.2
CSS0047097 Camellia sinensis var. sinensis HOM05D006770 ORTHO05D008356 6.8e-143 511.5 483 58.8
RcHm_v2.0_Chr5g0066911 Rosa chinensis HOM05D006770 ORTHO05D008356 8.9e-143 511.1 458 59.0
FAN13G3072 Fragaria x ananassa HOM05D006770 ORTHO05D008356 1.2e-142 510.8 445 60.0
Haze_22817 Corylus avellana HOM05D006770 ORTHO05D008356 2.0e-142 510.0 469 58.4
Prupe.5G010100 Prunus persica HOM05D006770 ORTHO05D008356 2.0e-142 510.0 462 57.8
CiPaw.07G136700 Carya illinoinensis HOM05D006770 ORTHO05D008356 5.8e-142 508.4 464 58.8
FAN18G3713 Fragaria x ananassa HOM05D006770 ORTHO05D008356 7.5e-142 508.1 444 59.9
FvH4_5g25440 Fragaria vesca HOM05D006770 ORTHO05D008356 1.3e-141 507.3 444 59.9
FAN08G2065 Fragaria x ananassa HOM05D006770 ORTHO05D008356 2.9e-141 506.1 445 59.3
TAR625G0814 Trochodendron aralioides HOM05D006770 ORTHO05D008356 4.9e-141 505.4 478 58.2
Thecc.08G061300 Theobroma cacao HOM05D006770 ORTHO05D008356 1.9e-140 503.4 459 58.8
COL.COLO4_36416 Corchorus olitorius HOM05D006770 ORTHO05D008356 3.2e-140 502.7 472 57.0
TWI79G0343 Tripterygium wilfordii HOM05D006770 ORTHO05D008356 7.0e-140 501.5 463 57.9
MD00G1136800 Malus domestica HOM05D006770 ORTHO05D008356 6.0e-139 498.4 455 57.8
Medtr4g084940 Medicago truncatula HOM05D006770 ORTHO05D008356 6.0e-139 498.4 450 58.4
Nn5g30983 Nelumbo nucifera HOM05D006770 ORTHO05D008356 6.0e-139 498.4 481 57.4
Gohir.A11G329900 Gossypium hirsutum HOM05D006770 ORTHO05D008356 3.0e-138 496.1 459 57.7
Oeu032124.1 Olea europaea HOM05D006770 ORTHO05D008356 6.6e-138 495.0 451 59.0
Ca_25485_v3 Cicer arietinum L. HOM05D006770 ORTHO05D008356 8.6e-138 494.6 446 58.5
Sabra05G0195800 Salix brachista HOM05D006770 ORTHO05D008356 1.1e-137 494.2 449 59.5
Aqoxy6G01625 Aquilegia oxysepala HOM05D006770 ORTHO05D008356 5.6e-137 491.9 477 55.6
Cfa014101 Carpinus fangiana HOM05D006770 ORTHO05D008356 1.2e-136 490.7 399 64.7
TPR.G35412 Trifolium pratense HOM05D006770 ORTHO05D008356 1.6e-136 490.3 455 57.1
Glyma.07G217000 Glycine max HOM05D006770 ORTHO05D008356 2.8e-136 489.6 451 57.2
Gorai.006G274800 Gossypium raimondii HOM05D006770 ORTHO05D008356 2.8e-136 489.6 459 56.6
CANSAT64G1545 Cannabis sativa HOM05D006770 ORTHO05D008356 8.1e-136 488.0 454 57.3
Phvul.001G002700 Phaseolus vulgaris HOM05D006770 ORTHO05D008356 1.1e-135 487.6 431 58.7
Gorai.004G294200 Gossypium raimondii HOM05D006770 ORTHO05D008356 3.1e-135 486.1 459 56.2
Manes.17G081600 Manihot esculenta HOM05D006770 ORTHO05D008356 3.1e-135 486.1 480 57.3
AUR62040821 Chenopodium quinoa HOM05D006770 ORTHO05D008356 8.9e-135 484.6 466 57.1
EL10Ac1g01921 Beta vulgaris HOM05D006770 ORTHO05D008356 1.2e-134 484.2 467 56.5
Glyma.20G013900 Glycine max HOM05D006770 ORTHO05D008356 4.4e-134 482.3 452 56.6
Lj4g0024175 Lotus japonicus HOM05D006770 ORTHO05D008356 4.4e-134 482.3 435 60.5
VMungo0251G0866 Vigna mungo HOM05D006770 ORTHO05D008356 5.8e-134 481.9 446 57.8
CAN.G79.22 Capsicum annuum HOM05D006770 ORTHO05D008356 2.2e-133 479.9 443 58.0
Rhsim13G0054100 Rhododendron simsii HOM05D006770 ORTHO05D008356 3.7e-133 479.2 473 55.8
Sc02g0009170 Simmondsia chinensis HOM05D006770 ORTHO05D008356 8.3e-133 478.0 490 55.1
PGR031G0937 Punica granatum HOM05D006770 ORTHO05D008356 1.9e-132 476.9 432 59.0
Manes.05G095800 Manihot esculenta HOM05D006770 ORTHO05D008356 2.4e-132 476.5 486 56.0
AUR62035131 Chenopodium quinoa HOM05D006770 ORTHO05D008356 9.2e-132 474.6 487 54.2
CAN.G79.18 Capsicum annuum HOM05D006770 ORTHO05D008356 1.2e-131 474.2 444 57.2
Cc09_g04530 Coffea canephora HOM05D006770 ORTHO05D008356 2.1e-131 473.4 502 52.6
Psat7g128200 Pisum sativum HOM05D006770 ORTHO05D008356 2.7e-131 473.0 442 58.6
Lalb_Chr05g0219451 Lupinus albus HOM05D006770 ORTHO05D008356 4.6e-131 472.2 446 56.3
Sopen02g019170 Solanum pennellii HOM05D006770 ORTHO05D008356 1.0e-130 471.1 458 55.9
Solyc02g070010.1 Solanum lycopersicum HOM05D006770 ORTHO05D008356 3.0e-130 469.5 458 55.9
CsaV3_1G014370 Cucumis sativus L. HOM05D006770 ORTHO05D008356 1.1e-129 467.6 457 55.4
Gohir.D08G007000 Gossypium hirsutum HOM05D006770 ORTHO05D008356 1.1e-129 467.6 437 56.8
PGSC0003DMG400021117 Solanum tuberosum HOM05D006770 ORTHO05D008356 1.1e-129 467.6 461 56.0
Hund01783 Selenicereus undatus HOM05D006770 ORTHO05D008356 2.5e-129 466.5 471 52.4
CDE04G3028 Ceratophyllum demersum HOM05D006770 ORTHO05D008356 1.2e-128 464.2 478 54.6
Gohir.A01G231900 Gossypium hirsutum HOM05D006770 ORTHO05D008356 6.2e-128 461.8 453 54.7
Gorai.009G456100 Gossypium raimondii HOM05D006770 ORTHO05D008356 6.2e-128 461.8 459 54.9
Nitab4.5_0001583g0140 Nicotiana tabacum HOM05D006770 ORTHO05D008356 1.1e-127 461.1 453 55.4
Nitab4.5_0001225g0180 Nicotiana tabacum HOM05D006770 ORTHO05D008356 4.0e-127 459.1 453 55.4
Sc02g0009150 Simmondsia chinensis HOM05D006770 ORTHO05D008356 4.0e-127 459.1 476 54.8
Gohir.D08G275542 Gossypium hirsutum HOM05D006770 ORTHO05D008356 5.2e-127 458.8 411 58.2
MELO3C004826.2 Cucumis melo HOM05D006770 ORTHO05D008356 8.9e-127 458.0 457 54.7
Gohir.A13G000201 Gossypium hirsutum HOM05D006770 ORTHO05D008356 8.9e-127 458.0 411 57.9
Atru.chr13.118 Acer truncatum HOM05D006770 ORTHO05D008356 5.8e-126 455.3 470 53.4
HanXRQChr06g0167391 Helianthus annuus HOM05D006770 ORTHO05D008356 1.1e-124 451.1 464 52.8
DCAR_024417 Daucus carota HOM05D006770 ORTHO05D008356 1.9e-124 450.3 469 56.1
ECA246G3919 Erigeron canadensis HOM05D006770 ORTHO05D008356 1.2e-123 447.6 496 50.4
Migut.M00215 Erythranthe guttata HOM05D006770 ORTHO05D008356 2.1e-123 446.8 437 56.1
Ah.00g000990 Amaranthus hybridus HOM05D006770 ORTHO05D008356 3.5e-123 446.0 468 52.8
SalBow7G3490 Salvia bowleyana HOM05D006770 ORTHO05D008356 1.3e-122 444.1 466 53.4
Dinv31957 Davidia involucrata HOM05D006770 ORTHO05D008356 1.9e-121 440.3 361 62.0
Lsat_1_v5_gn_3_16821 Lactuca sativa HOM05D006770 ORTHO05D008356 1.6e-120 437.2 463 51.0
Peaxi162Scf00670g00024 Petunia axillaris HOM05D006770 ORTHO05D008356 5.8e-118 428.7 455 54.7
vmacro02830 Vaccinium macrocarpon HOM05D006770 ORTHO05D008356 3.3e-113 412.9 339 61.4
Actinidia23351 Actinidia chinensis HOM05D006770 ORTHO05D008356 7.3e-113 411.8 458 53.9
Gorai.007G379700 Gossypium raimondii HOM05D006770 ORTHO05D008356 8.1e-112 408.3 404 55.2
HPP92_007114 Vanilla planifolia HOM05D006770 ORTHO05D008356 9.9e-110 401.4 454 50.0
ATR0807G062 Amborella trichopoda HOM05D006770 ORTHO05D008356 2.1e-107 393.7 483 48.7
Zm00001eb391890 Zea mays HOM05D006770 ORTHO05D008356 4.5e-102 375.9 413 49.2
SGA_v2.0_scaffold476G52129 Striga asiatica HOM05D006770 ORTHO05D008356 1.6e-99 367.5 469 48.0
SGA_v2.0_scaffold538G52786 Striga asiatica HOM05D006770 ORTHO05D008356 2.1e-99 367.1 469 47.8
Lj9P204T39 Lonicera japonica HOM05D006770 ORTHO05D008356 2.3e-98 363.6 319 63.3
Os02g0118000 Oryza sativa ssp. japonica HOM05D006770 ORTHO05D008356 1.6e-96 357.5 403 49.6
MD16G1284100 Malus domestica HOM05D006770 ORTHO05D008356 4.0e-95 352.8 399 50.1
SEGI_37300 Sequoiadendron giganteum HOM05D006770 ORTHO05D008356 1.9e-92 344.0 375 47.7
Gohir.D11G349500 Gossypium hirsutum HOM05D006770 ORTHO05D008356 6.1e-75 285.8 216 62.0
Sed0018053 Sechium edule HOM05D006770 ORTHO05D008356 2.2e-72 277.3 358 48.0
SEGI_07142 Sequoiadendron giganteum HOM05D006770 ORTHO05D008356 6.5e-61 239.2 394 37.3
Gohir.A06G000350 Gossypium hirsutum HOM05D006770 ORTHO05D008356 1.3e-53 214.9 192 55.2
Actinidia12910 Actinidia chinensis HOM05D006770 ORTHO05D008356 1.5e-52 211.5 342 43.0
ClCG01G012950 Citrullus lanatus HOM05D006770 ORTHO05D008356 1.4e-39 168.3 187 51.9
CAN.G733.12 Capsicum annuum HOM05D006770 ORTHO05D008356 1.9e-36 157.9 210 43.8
AagrBONN_evm.TU.Sc2ySwM_117.3058 Anthoceros agrestis HOM05D006770 ORTHO05D008356 4.7e-35 153.3 308 33.8
Gohir.D02G000400 Gossypium hirsutum HOM05D006770 ORTHO05D008356 6.2e-19 99.8 143 45.5
VMungo0720G0800 Vigna mungo HOM05D006770 ORTHO05D008356 5.2e-18 96.7 136 45.6
CAN.G332.6 Capsicum annuum HOM05D006770 ORTHO05D008356 3.4e-17 94.0 107 47.7
VMungo0331G1801 Vigna mungo HOM05D002295 ORTHO05D008356 9.9e-17 92.4 71 64.8
Mapoly0166s0014 Marchantia polymorpha HOM05D006770 ORTHO05D008356 1.6e-14 85.1 238 34.5
CBR_g51330 Chara braunii HOM05D009772 ORTHO05D000353 2.1e-14 84.7 320 21.9
Pp3c13_18720 Physcomitrium patens HOM05D006770 ORTHO05D008356 7.3e-12 76.3 211 28.9
Pp3c13_18722 Physcomitrium patens HOM05D006770 ORTHO05D008356 7.3e-12 76.3 211 28.9
Ca_18849_v3 Cicer arietinum L. HOM05D000068 ORTHO05D000084 1.2e-11 75.5 167 26.3
HPP92_006127 Vanilla planifolia HOM05D002479 ORTHO05D002675 1.1e-10 72.4 135 30.4
vmacro02831 Vaccinium macrocarpon HOM05D006770 ORTHO05D008356 1.4e-10 72.0 147 38.8
arahy.Tifrunner.gnm1.ann1.7VJC80 Arachis hypogaea HOM05D003177 ORTHO05D003481 1.1e-07 62.4 165 23.0
arahy.Tifrunner.gnm1.ann1.P62B18 Arachis hypogaea HOM05D003177 ORTHO05D003481 1.1e-07 62.4 165 23.0
arahy.Tifrunner.gnm1.ann1.Y3PJTZ Arachis hypogaea HOM05D003177 ORTHO05D003481 1.1e-07 62.4 165 23.0
arahy.Tifrunner.gnm1.ann1.W18Y25 Arachis hypogaea HOM05D003177 ORTHO05D003481 1.4e-07 62.0 165 23.0
Cpa.g.sc97.68 Carica papaya HOM05D003177 ORTHO05D003481 7.1e-07 59.7 145 24.8
AT5G25630 Arabidopsis thaliana HOM05D003689 ORTHO05D003950 9.2e-07 59.3 121 25.6
CAN.G1228.5 Capsicum annuum HOM05D005362 ORTHO05D006895 1.2e-06 58.9 291 22.3
Lsat_1_v5_gn_1_52140 Lactuca sativa HOM05D004824 ORTHO05D003903 1.2e-06 58.9 173 24.3
TAR381G0468 Trochodendron aralioides HOM05D006770 ORTHO05D008356 1.2e-06 58.9 88 42.0
Carub.0006s2350 Capsella rubella HOM05D003689 ORTHO05D003950 2.1e-06 58.2 124 25.8
Nitab4.5_0003410g0050 Nicotiana tabacum HOM05D000891 ORTHO05D000761 3.5e-06 57.4 256 23.0
CANSAT11G0661 Cannabis sativa HOM05D003056 ORTHO05D003422 6.0e-06 56.6 165 28.5
Glyma.06G268800 Glycine max HOM05D003177 ORTHO05D003481 6.0e-06 56.6 165 23.0
Rhsim12G0149500 Rhododendron simsii HOM05D005362 ORTHO05D006895 6.0e-06 56.6 296 20.3
Rhsim12G0149700 Rhododendron simsii HOM05D005362 ORTHO05D006895 6.0e-06 56.6 296 20.3
Sp2g21900 Schrenkiella parvula HOM05D003689 ORTHO05D003950 6.0e-06 56.6 124 25.0
CARHR187690 Cardamine hirsuta HOM05D003689 ORTHO05D003950 7.8e-06 56.2 124 25.0
Nitab4.5_0000628g0030 Nicotiana tabacum HOM05D000891 ORTHO05D000761 7.8e-06 56.2 256 23.0


User provided reference genes

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