Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR143360 Cardamine hirsuta HOM05D004682 ORTHO05D006197 0.0e+00 2110.9 1098 100.0
Carub.0004s3070 Capsella rubella HOM05D004682 ORTHO05D006197 0.0e+00 1879.8 1046 91.1
AL4G47570 Arabidopsis lyrata HOM05D004682 ORTHO05D006197 0.0e+00 1875.1 1039 91.6
Sp4g29900 Schrenkiella parvula HOM05D004682 ORTHO05D006197 0.0e+00 1875.1 1109 87.4
AT2G47980 Arabidopsis thaliana HOM05D004682 ORTHO05D006197 0.0e+00 1863.2 1041 90.7
Thhalv10001288m.g Eutrema salsugineum HOM05D004682 ORTHO05D006197 0.0e+00 1856.6 1117 87.3
BcaB02g08728 Brassica carinata HOM05D004682 ORTHO05D006197 0.0e+00 1838.9 1073 87.4
C04p00010 Brassica napus HOM05D004682 ORTHO05D006197 0.0e+00 1829.7 1065 87.4
A05p00090 Brassica napus HOM05D004682 ORTHO05D006197 0.0e+00 1826.6 1052 88.1
BraA05t19005Z Brassica rapa HOM05D004682 ORTHO05D006197 0.0e+00 1826.6 1051 88.3
BcaC02g12533 Brassica carinata HOM05D004682 ORTHO05D006197 0.0e+00 1824.3 1067 87.3
BolC4t21648H Brassica oleracea HOM05D004682 ORTHO05D006197 0.0e+00 1816.2 1077 86.4
Aa31LG1G29400 Aethionema arabicum HOM05D004682 ORTHO05D006197 0.0e+00 1771.5 1127 82.4
AL7G17990 Arabidopsis lyrata HOM05D004682 ORTHO05D006197 0.0e+00 1677.1 979 86.9
THA.LOC104817537 Tarenaya hassleriana HOM05D004682 ORTHO05D006197 0.0e+00 1604.3 1084 77.6
Thecc.01G288600 Theobroma cacao HOM05D004682 ORTHO05D006197 0.0e+00 1448.7 1092 68.8
Duzib138G0788 Durio zibethinus HOM05D004682 ORTHO05D006197 0.0e+00 1439.1 1093 68.1
Gohir.A11G118700 Gossypium hirsutum HOM05D004682 ORTHO05D006197 0.0e+00 1431.8 1089 68.0
Gohir.D11G123600 Gossypium hirsutum HOM05D004682 ORTHO05D006197 0.0e+00 1431.4 1089 67.9
Ciclev10018593m.g Citrus clementina HOM05D004682 ORTHO05D006197 0.0e+00 1428.3 1095 67.0
QL12p023658 Quercus lobata HOM05D004682 ORTHO05D006197 0.0e+00 1426.8 1085 66.7
Gorai.007G132500 Gossypium raimondii HOM05D004682 ORTHO05D006197 0.0e+00 1425.6 1089 67.7
CiPaw.07G098500 Carya illinoinensis HOM05D004682 ORTHO05D006197 0.0e+00 1409.0 1089 67.1
Hma1.2p1_0399F.1_g144320 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 0.0e+00 1402.9 1089 65.5
CSS0044691 Camellia sinensis var. sinensis HOM05D004682 ORTHO05D006197 0.0e+00 1389.8 1089 64.6
GSVIVG01011020001 Vitis vinifera HOM05D004682 ORTHO05D006197 0.0e+00 1389.8 1094 64.9
Manes.01G212500 Manihot esculenta HOM05D004682 ORTHO05D006197 0.0e+00 1385.2 1030 68.1
Dinv32984 Davidia involucrata HOM05D004682 ORTHO05D006197 0.0e+00 1383.6 1063 66.0
TAR633G2734 Trochodendron aralioides HOM05D004682 ORTHO05D006197 0.0e+00 1378.6 1067 65.7
Eucgr.K03425 Eucalyptus grandis HOM05D004682 ORTHO05D006197 0.0e+00 1376.3 1086 65.0
Potri.002G230800 Populus trichocarpa HOM05D004682 ORTHO05D006197 0.0e+00 1374.8 1079 65.2
Prupe.8G250900 Prunus persica HOM05D004682 ORTHO05D006197 0.0e+00 1372.8 1089 65.3
Haze_04797 Corylus avellana HOM05D004682 ORTHO05D006197 0.0e+00 1370.9 1004 69.0
CsaV3_1G038120 Cucumis sativus L. HOM05D004682 ORTHO05D006197 0.0e+00 1367.1 1087 64.5
CANSAT25G1381 Cannabis sativa HOM05D004682 ORTHO05D006197 0.0e+00 1363.2 1083 65.6
Sed0020737 Sechium edule HOM05D004682 ORTHO05D006197 0.0e+00 1359.0 1078 64.0
Actinidia00705 Actinidia chinensis HOM05D004682 ORTHO05D006197 0.0e+00 1353.2 1074 63.9
PGR044G1334 Punica granatum HOM05D004682 ORTHO05D006197 0.0e+00 1341.3 1079 62.9
Nn3g21239 Nelumbo nucifera HOM05D004682 ORTHO05D006197 0.0e+00 1340.5 1094 63.1
MD11G1296700 Malus domestica HOM05D004682 ORTHO05D006197 0.0e+00 1337.8 1096 63.6
arahy.Tifrunner.gnm1.ann1.SJK0SQ Arachis hypogaea HOM05D004682 ORTHO05D006197 0.0e+00 1335.1 1084 62.7
Ca_09103_v3 Cicer arietinum L. HOM05D004682 ORTHO05D006197 0.0e+00 1332.4 1071 62.7
Cc01_g20100 Coffea canephora HOM05D004682 ORTHO05D006197 0.0e+00 1332.4 1091 62.9
Sabra02G0176000 Salix brachista HOM05D004682 ORTHO05D006197 0.0e+00 1331.6 1104 62.7
Cfa006055 Carpinus fangiana HOM05D003625 ORTHO05D006197 0.0e+00 1317.4 967 69.1
Oeu002696.1 Olea europaea HOM05D004682 ORTHO05D006197 0.0e+00 1316.6 1121 61.9
MBI19_g27957_MAGBIO Magnolia biondii HOM05D004682 ORTHO05D006197 0.0e+00 1313.5 1132 61.4
Rhsim13G0018300 Rhododendron simsii HOM05D004682 ORTHO05D006197 0.0e+00 1305.0 1056 63.4
arahy.Tifrunner.gnm1.ann1.BJ6WT1 Arachis hypogaea HOM05D004682 ORTHO05D006197 0.0e+00 1301.2 1084 61.5
Aqoxy2G03153 Aquilegia oxysepala HOM05D004682 ORTHO05D006197 0.0e+00 1300.8 1081 62.5
VMungo1383G2773 Vigna mungo HOM05D004682 ORTHO05D006197 0.0e+00 1298.5 1083 62.3
Glyma.03G207600 Glycine max HOM05D004682 ORTHO05D006197 0.0e+00 1295.8 1080 61.6
Lalb_Chr20g0111011 Lupinus albus HOM05D004682 ORTHO05D006197 0.0e+00 1294.3 1080 61.4
Lj1g0026346 Lotus japonicus HOM05D004682 ORTHO05D006197 0.0e+00 1286.2 1085 60.9
RcHm_v2.0_Chr6g0292391 Rosa chinensis HOM05D004682 ORTHO05D006197 0.0e+00 1284.2 1088 61.1
AUR62013599 Chenopodium quinoa HOM05D004682 ORTHO05D006197 0.0e+00 1283.5 1077 60.8
COL.COLO4_08044 Corchorus olitorius HOM05D004682 ORTHO05D006197 0.0e+00 1283.1 1095 63.1
Sopen05g022990 Solanum pennellii HOM05D004682 ORTHO05D006197 0.0e+00 1283.1 1079 60.6
MSTRG.18200 Avicennia marina HOM05D004682 ORTHO05D006197 0.0e+00 1281.5 1084 60.9
FAN27G0404 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1279.6 1087 61.0
vmacro02515 Vaccinium macrocarpon HOM05D004682 ORTHO05D006197 0.0e+00 1279.6 1195 56.9
FvH4_2g24570 Fragaria vesca HOM05D004682 ORTHO05D006197 0.0e+00 1277.7 1086 61.2
FAN15G3206 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1276.2 1087 61.2
CAN.G13.21 Capsicum annuum HOM05D004682 ORTHO05D006197 0.0e+00 1273.5 1078 60.9
Phvul.001G201200 Phaseolus vulgaris HOM05D004682 ORTHO05D006197 0.0e+00 1273.5 1077 61.9
TPR.G32282 Trifolium pratense HOM05D004682 ORTHO05D006197 0.0e+00 1273.1 1089 60.4
FAN24G1905 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1272.7 1086 61.0
PSO170G5080 Papaver somniferum HOM05D004682 ORTHO05D006197 0.0e+00 1272.7 1084 61.1
SalBow3G2371 Salvia bowleyana HOM05D004682 ORTHO05D006197 0.0e+00 1271.9 1098 59.7
Solyc05g026510.4 Solanum lycopersicum HOM05D004682 ORTHO05D006197 0.0e+00 1271.9 1095 59.9
Psat3g025520 Pisum sativum HOM05D004682 ORTHO05D006197 0.0e+00 1271.5 1094 60.4
AUR62026692 Chenopodium quinoa HOM05D004682 ORTHO05D006197 0.0e+00 1267.3 1112 58.6
DCAR_018370 Daucus carota HOM05D004682 ORTHO05D006197 0.0e+00 1263.8 1087 61.3
CDE05G1251 Ceratophyllum demersum HOM05D004682 ORTHO05D006197 0.0e+00 1262.3 1068 60.4
Medtr7g107440 Medicago truncatula HOM05D004682 ORTHO05D006197 0.0e+00 1260.0 1080 60.9
Atru.chr5.1294 Acer truncatum HOM05D004682 ORTHO05D006197 0.0e+00 1257.3 1092 61.3
FAN20G1430 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1255.7 1085 60.3
PSO407G0071 Papaver somniferum HOM05D004682 ORTHO05D006197 0.0e+00 1255.0 1083 60.5
Lj2A1184G69 Lonicera japonica HOM05D004682 ORTHO05D006197 0.0e+00 1249.6 1032 62.8
HanXRQChr10g0283031 Helianthus annuus HOM05D004682 ORTHO05D006197 0.0e+00 1245.3 1085 60.5
Lsat_1_v5_gn_9_5121 Lactuca sativa HOM05D004682 ORTHO05D006197 0.0e+00 1241.9 1080 60.5
Migut.D00237 Erythranthe guttata HOM05D004682 ORTHO05D006197 0.0e+00 1241.1 1042 60.5
SGA_v2.0_scaffold1G00427 Striga asiatica HOM05D004682 ORTHO05D006197 0.0e+00 1235.7 1094 59.0
Ah.05g167980 Amaranthus hybridus HOM05D004682 ORTHO05D006197 0.0e+00 1235.3 1019 60.8
ECA247G2915 Erigeron canadensis HOM05D004682 ORTHO05D006197 0.0e+00 1225.3 1060 59.8
Lalb_Chr25g0287581 Lupinus albus HOM05D004682 ORTHO05D006197 0.0e+00 1224.9 1062 59.7
EL10Ac1g01562 Beta vulgaris HOM05D004682 ORTHO05D006197 0.0e+00 1216.8 1088 57.4
TWI59G0906 Tripterygium wilfordii HOM05D004682 ORTHO05D006197 0.0e+00 1199.9 1093 58.8
Hund18022 Selenicereus undatus HOM05D004682 ORTHO05D006197 0.0e+00 1196.8 1021 59.8
Nitab4.5_0000135g0040 Nicotiana tabacum HOM05D004682 ORTHO05D006197 0.0e+00 1191.0 990 61.4
Peaxi162Scf00159g01650 Petunia axillaris HOM05D004682 ORTHO05D006197 0.0e+00 1183.7 1076 58.3
Medtr1g048130 Medicago truncatula HOM05D004682 ORTHO05D006197 0.0e+00 1178.3 1047 57.4
Nitab4.5_0000282g0030 Nicotiana tabacum HOM05D004682 ORTHO05D006197 0.0e+00 1176.8 1050 58.7
MELO3C015235.2 Cucumis melo HOM05D004682 ORTHO05D006197 0.0e+00 1175.6 875 67.9
Os05g0188500 Oryza sativa ssp. japonica HOM05D004682 ORTHO05D006197 0.0e+00 1173.7 1030 58.1
unitig_22.g5252 Utricularia gibba HOM05D004682 ORTHO05D006197 0.0e+00 1158.7 1054 57.7
ATR0706G112 Amborella trichopoda HOM05D004682 ORTHO05D006197 0.0e+00 1157.1 1042 58.8
SEGI_13218 Sequoiadendron giganteum HOM05D004682 ORTHO05D006197 0.0e+00 1134.4 1051 55.9
Zm00001eb115650 Zea mays HOM05D004682 ORTHO05D006197 0.0e+00 1134.0 1027 56.2
PGSC0003DMG401015901 Solanum tuberosum HOM05D004682 ORTHO05D006197 0.0e+00 1120.9 896 63.3
Medtr1g047970 Medicago truncatula HOM05D004682 ORTHO05D006197 0.0e+00 1109.4 1065 54.7
HPP92_017192 Vanilla planifolia HOM05D004682 ORTHO05D006197 1.7e-306 1056.2 1078 53.6
Cpa.g.sc9.149 Carica papaya HOM05D004682 ORTHO05D006197 1.2e-304 1050.0 1070 54.7
Potri.014G151400 Populus trichocarpa HOM05D004682 ORTHO05D006197 7.0e-300 1034.2 871 61.7
Sc17g0003630 Simmondsia chinensis HOM05D004682 ORTHO05D006197 4.7e-296 1021.5 781 65.7
COL.COLO4_31667 Corchorus olitorius HOM05D004682 ORTHO05D006197 2.7e-288 995.7 957 54.4
Hma1.2p1_1049F.1_g251880 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 1.5e-286 989.9 677 73.0
HPP92_027340 Vanilla planifolia HOM05D004682 ORTHO05D006197 8.3e-285 984.2 1075 50.6
Mapoly0007s0132 Marchantia polymorpha HOM05D004682 ORTHO05D006197 5.0e-282 974.9 1050 49.2
SHI14494 Sapria himalayana HOM05D004682 ORTHO05D006197 3.5e-267 925.6 783 61.3
Pp3c9_5570 Physcomitrium patens HOM05D004682 ORTHO05D006197 1.2e-262 910.6 992 47.7
SMO347G0479 Selaginella moellendorffii HOM05D004682 ORTHO05D006197 6.0e-259 898.3 964 48.8
AagrBONN_evm.TU.Sc2ySwM_369.560 Anthoceros agrestis HOM05D004682 ORTHO05D006197 9.2e-244 847.8 1018 45.4
QL12p023612 Quercus lobata HOM05D004682 ORTHO05D006197 6.7e-218 761.9 663 59.3
Hma1.2p1_0399F.1_g144310 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 1.1e-209 734.6 513 71.9
Hma1.2p1_1049F.1_g251875 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 1.1e-209 734.6 513 71.9
CBR_g31051 Chara braunii HOM05D004682 ORTHO05D006197 2.5e-196 690.3 1063 38.7
Hma1.2p1_0399F.1_g144330 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 3.7e-192 676.4 575 59.8
ClCG03G018080 Citrullus lanatus HOM05D004682 ORTHO05D006197 2.9e-144 517.3 363 71.9
Medtr3g050420 Medicago truncatula HOM05D004682 ORTHO05D006197 1.4e-95 355.5 398 49.7
MCO01G509 Micromonas commoda HOM05D004682 ORTHO05D006197 1.7e-64 252.3 1042 23.9
HanXRQChr08g0228671 Helianthus annuus HOM05D004682 ORTHO05D006197 8.3e-59 233.4 202 58.4
Actinidia24288 Actinidia chinensis HOM05D004682 ORTHO05D006197 4.0e-53 214.5 143 70.6
PSO384G2775 Papaver somniferum HOM05D004682 ORTHO05D006197 3.3e-47 194.9 164 61.6
Thecc.06G206000 Theobroma cacao HOM05D004682 ORTHO05D006197 2.2e-43 182.2 172 59.9
Cfa025969 Carpinus fangiana HOM05D004682 ORTHO05D006197 4.3e-39 167.9 635 23.9
PGSC0003DMG402015901 Solanum tuberosum HOM05D004682 ORTHO05D006197 3.6e-38 164.9 204 44.6
PGSC0003DMG400019559 Solanum tuberosum HOM05D004682 ORTHO05D006197 3.4e-36 158.3 177 50.8
Cre17.g736400 Chlamydomonas reinhardtii HOM05D004682 ORTHO05D006197 5.8e-36 157.5 388 30.4
HanXRQChr08g0228681 Helianthus annuus HOM05D004682 ORTHO05D006197 2.3e-32 145.6 154 52.6
ClCG03G018060 Citrullus lanatus HOM05D004682 ORTHO05D006197 1.2e-30 139.8 167 47.3
DCAR_030309 Daucus carota HOM05D004682 ORTHO05D006197 1.1e-26 126.7 141 48.9
PGSC0003DMG400006683 Solanum tuberosum HOM05D004682 ORTHO05D006197 3.5e-25 121.7 121 56.2
RcHm_v2.0_Chr5g0002211 Rosa chinensis HOM05D004682 ORTHO05D029379 3.7e-19 101.7 270 28.5
Medtr5g092930 Medicago truncatula HOM05D004682 ORTHO05D006197 2.4e-18 99.0 89 53.9
PGSC0003DMG400019558 Solanum tuberosum HOM05D004682 ORTHO05D006197 2.1e-17 95.9 103 47.6
Thecc.06G205900 Theobroma cacao HOM05D004682 ORTHO05D006197 1.6e-14 86.3 74 62.2
Medtr7g089690 Medicago truncatula HOM05D004682 ORTHO05D006197 1.3e-11 76.6 68 57.4
Medtr5g092920 Medicago truncatula HOM05D036979 ORTHO05D006197 2.9e-11 75.5 302 26.5
Solyc09g037030.2 Solanum lycopersicum HOM05D020974 ORTHO05D023151 1.5e-07 63.2 123 35.8
PGSC0003DMG400017057 Solanum tuberosum HOM05D004682 ORTHO05D005906 5.6e-07 61.2 50 48.0
PGSC0003DMG400005432 Solanum tuberosum HOM05D004682 ORTHO05D003903 2.1e-06 59.3 48 56.2


User provided reference genes

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