Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR141880 Cardamine hirsuta HOM05D007265 ORTHO05D009118 1.9e-27 125.2 66 100.0
AT2G46540 Arabidopsis thaliana HOM05D007265 ORTHO05D009118 8.8e-25 116.3 66 92.4
Sp4g28590 Schrenkiella parvula HOM05D007265 ORTHO05D009118 8.8e-25 116.3 66 92.4
AL4G45970 Arabidopsis lyrata HOM05D007265 ORTHO05D009118 1.2e-24 115.9 66 90.9
BcaC02g12671 Brassica carinata HOM05D007265 ORTHO05D009118 2.0e-24 115.2 66 90.9
BcaC02g12679 Brassica carinata HOM05D007265 ORTHO05D009118 2.0e-24 115.2 66 90.9
C04p01380 Brassica napus HOM05D007265 ORTHO05D009118 2.0e-24 115.2 66 90.9
BolC4t21791H Brassica oleracea HOM05D007265 ORTHO05D009118 2.0e-24 115.2 66 90.9
BraA05t19124Z Brassica rapa HOM05D007265 ORTHO05D009118 2.0e-24 115.2 66 90.9
Carub.0004s2926 Capsella rubella HOM05D007265 ORTHO05D009118 3.4e-24 114.4 64 92.2
BcaC02g07039 Brassica carinata HOM05D007265 ORTHO05D009118 3.1e-22 107.8 66 87.9
THA.LOC104817372 Tarenaya hassleriana HOM05D007265 ORTHO05D009118 5.4e-22 107.1 66 78.8
A04p34450 Brassica napus HOM05D007265 ORTHO05D009118 9.1e-22 106.3 66 86.4
Hma1.2p1_0390F.1_g142620 Hydrangea macrophylla HOM05D007265 ORTHO05D009118 1.6e-21 105.5 64 84.4
BraA04t18903Z Brassica rapa HOM05D007265 ORTHO05D009118 3.5e-21 104.4 66 84.8
THA.LOC104802081 Tarenaya hassleriana HOM05D007265 ORTHO05D009118 4.5e-21 104.0 66 77.3
Cc02_g39560 Coffea canephora HOM05D007265 ORTHO05D009118 1.3e-20 102.4 63 81.0
MD01G1083600 Malus domestica HOM05D007265 ORTHO05D009118 2.3e-20 101.7 63 84.1
MD07G1152300 Malus domestica HOM05D007265 ORTHO05D009118 2.3e-20 101.7 63 84.1
PGSC0003DMG400000233 Solanum tuberosum HOM05D007265 ORTHO05D009118 2.3e-20 101.7 66 80.3
Nitab4.5_0003865g0020 Nicotiana tabacum HOM05D007265 ORTHO05D009118 2.9e-20 101.3 66 78.8
Atru.chr5.686 Acer truncatum HOM05D007265 ORTHO05D009118 3.8e-20 100.9 63 81.0
BolC4t28709H Brassica oleracea HOM05D007265 ORTHO05D009118 3.8e-20 100.9 66 81.8
CSS0038215 Camellia sinensis var. sinensis HOM05D007265 ORTHO05D009118 5.0e-20 100.5 66 77.3
Ciclev10023834m.g Citrus clementina HOM05D007265 ORTHO05D009118 8.6e-20 99.8 66 78.8
Prupe.2G190600 Prunus persica HOM05D007265 ORTHO05D009118 8.6e-20 99.8 63 82.5
Thecc.01G340400 Theobroma cacao HOM05D007265 ORTHO05D009118 8.6e-20 99.8 66 77.3
Lj7E499T0 Lonicera japonica HOM05D007265 ORTHO05D009118 1.1e-19 99.4 66 75.8
Nn1g00287 Nelumbo nucifera HOM05D007265 ORTHO05D009118 1.1e-19 99.4 64 78.1
Nitab4.5_0000258g0270 Nicotiana tabacum HOM05D007265 ORTHO05D009118 1.1e-19 99.4 66 75.8
CAN.G1415.20 Capsicum annuum HOM05D007265 ORTHO05D009118 1.5e-19 99.0 66 77.3
CiPaw.01G077600 Carya illinoinensis HOM05D007265 ORTHO05D009118 1.5e-19 99.0 63 81.0
DCAR_005402 Daucus carota HOM05D007265 ORTHO05D009118 1.5e-19 99.0 66 75.8
BcaC02g07016 Brassica carinata HOM05D007265 ORTHO05D009118 1.9e-19 98.6 58 89.7
Oeu008708.1 Olea europaea HOM05D007265 ORTHO05D009118 1.9e-19 98.6 66 74.2
Solyc01g096090.4 Solanum lycopersicum HOM05D007265 ORTHO05D009118 1.9e-19 98.6 66 78.8
Sopen01g039810 Solanum pennellii HOM05D007265 ORTHO05D009118 1.9e-19 98.6 66 78.8
GSVIVG01027169001 Vitis vinifera HOM05D007265 ORTHO05D009118 1.9e-19 98.6 66 75.8
MELO3C022263.2 Cucumis melo HOM05D007265 ORTHO05D009118 2.5e-19 98.2 63 77.8
PSO063G4371 Papaver somniferum HOM05D007265 ORTHO05D009118 2.5e-19 98.2 64 76.6
DCAR_025264 Daucus carota HOM05D007265 ORTHO05D009118 3.3e-19 97.8 66 77.3
A05p01230 Brassica napus HOM05D007265 ORTHO05D009118 4.2e-19 97.4 55 90.9
Sabra02G0140200 Salix brachista HOM05D007265 ORTHO05D009118 4.2e-19 97.4 68 75.0
PSO170G4391 Papaver somniferum HOM05D007265 ORTHO05D009118 5.5e-19 97.1 64 75.0
HPP92_020189 Vanilla planifolia HOM05D004435 ORTHO05D005103 5.5e-19 97.1 64 76.6
CsaV3_6G008500 Cucumis sativus L. HOM05D007265 ORTHO05D009118 7.2e-19 96.7 63 76.2
Nitab4.5_0001763g0020 Nicotiana tabacum HOM05D007265 ORTHO05D009118 7.2e-19 96.7 66 77.3
TWI59G0786 Tripterygium wilfordii HOM05D007265 ORTHO05D009118 7.2e-19 96.7 63 77.8
Aa31LG1G27910 Aethionema arabicum HOM05D007265 ORTHO05D009118 1.2e-18 95.9 54 87.0
Potri.002G173101 Populus trichocarpa HOM05D007265 ORTHO05D009118 1.2e-18 95.9 68 75.0
Duzib138G0325 Durio zibethinus HOM05D007265 ORTHO05D009118 1.6e-18 95.5 66 75.8
TAR374G1528 Trochodendron aralioides HOM05D007265 ORTHO05D009118 2.1e-18 95.1 63 77.8
Gohir.A11G097900 Gossypium hirsutum HOM05D007265 ORTHO05D009118 2.8e-18 94.7 66 74.2
Gohir.D11G102600 Gossypium hirsutum HOM05D007265 ORTHO05D009118 2.8e-18 94.7 66 74.2
PGR042G1917 Punica granatum HOM05D007265 ORTHO05D009118 4.7e-18 94.0 66 72.7
ATR0602G127 Amborella trichopoda HOM05D007265 ORTHO05D009118 6.1e-18 93.6 64 75.0
Duzib133G0073 Durio zibethinus HOM05D007265 ORTHO05D009118 6.1e-18 93.6 66 72.7
Thhalv10001742m.g Eutrema salsugineum HOM05D007265 ORTHO05D009118 6.1e-18 93.6 114 53.5
Sed0002056 Sechium edule HOM05D007265 ORTHO05D009118 6.1e-18 93.6 63 74.6
Gohir.D12G116700 Gossypium hirsutum HOM05D007265 ORTHO05D009118 8.0e-18 93.2 66 72.7
HanXRQChr03g0093001 Helianthus annuus HOM05D007265 ORTHO05D009118 8.0e-18 93.2 63 73.0
Manes.05G021500 Manihot esculenta HOM05D007265 ORTHO05D009118 8.0e-18 93.2 66 75.8
Migut.N01534 Erythranthe guttata HOM05D007265 ORTHO05D009118 1.0e-17 92.8 66 71.2
Gohir.A12G113200 Gossypium hirsutum HOM05D007265 ORTHO05D009118 3.0e-17 91.3 66 71.2
HanXRQChr16g0521331 Helianthus annuus HOM05D007265 ORTHO05D009118 4.0e-17 90.9 64 68.8
Manes.01G244801 Manihot esculenta HOM05D007265 ORTHO05D009118 4.0e-17 90.9 66 74.2
Aqoxy5G04249 Aquilegia oxysepala HOM05D007265 ORTHO05D009118 8.9e-17 89.7 61 73.8
HanXRQChr13g0423241 Helianthus annuus HOM05D007265 ORTHO05D009118 8.9e-17 89.7 64 68.8
Lsat_1_v5_gn_4_39661 Lactuca sativa HOM05D007265 ORTHO05D009118 2.0e-16 88.6 58 72.4
ClCG06G002640 Citrullus lanatus HOM05D007265 ORTHO05D009118 2.6e-16 88.2 56 78.6
Os05g0542100 Oryza sativa ssp. japonica HOM05D007265 ORTHO05D009118 3.4e-16 87.8 66 66.7
Oeu007878.1 Olea europaea HOM05D007265 ORTHO05D009118 4.4e-16 87.4 55 81.8
Glyma.03G258500 Glycine max HOM05D007265 ORTHO05D009118 5.7e-16 87.0 63 68.3
Glyma.19G257100 Glycine max HOM05D007265 ORTHO05D009118 5.7e-16 87.0 63 68.3
Phvul.006G114500 Phaseolus vulgaris HOM05D007265 ORTHO05D009118 7.5e-16 86.7 63 68.3
Medtr7g117700 Medicago truncatula HOM05D007265 ORTHO05D009118 9.8e-16 86.3 63 68.3
Hund16719 Selenicereus undatus HOM05D007265 ORTHO05D009118 9.8e-16 86.3 81 58.0
Lalb_Chr18g0044541 Lupinus albus HOM05D007265 ORTHO05D009118 1.7e-15 85.5 63 68.3
arahy.Tifrunner.gnm1.ann1.4N8QKH Arachis hypogaea HOM05D007265 ORTHO05D009118 2.2e-15 85.1 61 70.5
Sc01g0002550 Simmondsia chinensis HOM05D007265 ORTHO05D009118 2.2e-15 85.1 57 70.2
SalBow5G3999 Salvia bowleyana HOM05D002476 ORTHO05D002652 2.8e-15 84.7 55 80.0
MSTRG.17355 Avicennia marina HOM05D007265 ORTHO05D009118 3.7e-15 84.3 55 80.0
CANSAT56G3703 Cannabis sativa HOM05D007265 ORTHO05D009118 3.7e-15 84.3 63 68.3
Ca_09518_v3 Cicer arietinum L. HOM05D007265 ORTHO05D009118 3.7e-15 84.3 63 65.1
arahy.Tifrunner.gnm1.ann1.PH1UFL Arachis hypogaea HOM05D007265 ORTHO05D009118 4.9e-15 84.0 60 70.0
BcaNung06658 Brassica carinata HOM05D007265 ORTHO05D009118 4.9e-15 84.0 48 89.6
Lsat_1_v5_gn_3_126500 Lactuca sativa HOM05D007265 ORTHO05D009118 6.3e-15 83.6 57 71.9
Nn3g18955 Nelumbo nucifera HOM05D007265 ORTHO05D009118 6.3e-15 83.6 64 71.9
EL10Ac1g00247 Beta vulgaris HOM05D007265 ORTHO05D009118 8.3e-15 83.2 55 72.7
Hund27188 Selenicereus undatus HOM05D007265 ORTHO05D009118 1.1e-14 82.8 57 73.7
COL.COLO4_06226 Corchorus olitorius HOM05D007265 ORTHO05D009118 3.1e-14 81.3 54 77.8
vmacro13170 Vaccinium macrocarpon HOM05D007265 ORTHO05D009118 3.1e-14 81.3 58 70.7
Lj1g0009143 Lotus japonicus HOM05D007265 ORTHO05D009118 4.1e-14 80.9 63 61.9
Lalb_Chr15g0076341 Lupinus albus HOM05D007265 ORTHO05D009118 4.1e-14 80.9 63 63.5
MBI07_g24775_MAGBIO Magnolia biondii HOM05D007265 ORTHO05D009118 1.2e-13 79.3 60 70.0
AUR62004508 Chenopodium quinoa HOM05D007265 ORTHO05D009118 2.7e-13 78.2 54 72.2
Gorai.008G126400 Gossypium raimondii HOM05D007265 ORTHO05D009118 4.5e-13 77.4 55 70.9
Ah.05g179400 Amaranthus hybridus HOM05D007265 ORTHO05D009118 1.0e-12 76.3 57 68.4
Rhsim01G0174400 Rhododendron simsii HOM05D007265 ORTHO05D009118 1.3e-12 75.9 82 54.9
Psat3g174080 Pisum sativum HOM05D007265 ORTHO05D009118 1.7e-12 75.5 56 66.1
Psat3g001880 Pisum sativum HOM05D007265 ORTHO05D009118 1.9e-11 72.0 52 69.2
Os01g0705500 Oryza sativa ssp. japonica HOM05D007265 ORTHO05D009118 7.3e-11 70.1 51 76.5
Gorai.007G109700 Gossypium raimondii HOM05D007265 ORTHO05D009118 3.6e-10 67.8 45 75.6
Nitab4.5_0010712g0030 Nicotiana tabacum HOM05D007265 ORTHO05D009118 1.4e-09 65.9 43 74.4
RcHm_v2.0_Chr1g0360081 Rosa chinensis HOM05D000497 ORTHO05D013080 3.1e-09 64.7 37 83.8
SGA_v2.0_scaffold232G43548 Striga asiatica HOM05D007265 ORTHO05D009118 8.9e-09 63.2 39 79.5
BcaC03g16694 Brassica carinata HOM05D007265 ORTHO05D009118 5.8e-08 60.5 42 81.0


User provided reference genes

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