Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR141310 Cardamine hirsuta HOM05D004502 ORTHO05D005579 0.0e+00 1630.2 809 100.0
AL4G45280 Arabidopsis lyrata HOM05D004502 ORTHO05D005579 0.0e+00 1506.9 809 91.7
Carub.0004s2875 Capsella rubella HOM05D004502 ORTHO05D005579 0.0e+00 1504.6 810 91.9
Sp4g28120 Schrenkiella parvula HOM05D004502 ORTHO05D005579 0.0e+00 1484.2 810 90.1
Thhalv10001314m.g Eutrema salsugineum HOM05D004502 ORTHO05D005579 0.0e+00 1478.4 810 90.0
AT2G46060 Arabidopsis thaliana HOM05D004502 ORTHO05D005579 0.0e+00 1469.9 809 89.4
C04p06950 Brassica napus HOM05D004502 ORTHO05D005579 0.0e+00 1424.1 814 87.3
BolC4t22316H Brassica oleracea HOM05D004502 ORTHO05D005579 0.0e+00 1424.1 814 87.3
A05p06020 Brassica napus HOM05D004502 ORTHO05D005579 0.0e+00 1404.4 813 86.3
BraA05t19565Z Brassica rapa HOM05D004502 ORTHO05D005579 0.0e+00 1400.2 813 86.1
Aa31LG1G27460 Aethionema arabicum HOM05D004502 ORTHO05D005579 0.0e+00 1398.3 815 85.0
BraA04t18886Z Brassica rapa HOM05D004502 ORTHO05D005579 0.0e+00 1368.6 812 84.1
A04p34250 Brassica napus HOM05D004502 ORTHO05D005579 0.0e+00 1357.4 838 81.5
C04p72070 Brassica napus HOM05D004502 ORTHO05D005579 0.0e+00 1343.6 838 80.9
THA.LOC104802040 Tarenaya hassleriana HOM05D004502 ORTHO05D005579 0.0e+00 1268.8 815 76.7
Cpa.g.sc11.33 Carica papaya HOM05D004502 ORTHO05D005579 3.1e-289 998.4 815 62.3
Ciclev10018851m.g Citrus clementina HOM05D004502 ORTHO05D005579 1.8e-276 956.1 796 58.9
Haze_15535 Corylus avellana HOM05D004502 ORTHO05D005579 4.4e-275 951.4 818 59.5
Potri.014G087300 Populus trichocarpa HOM05D004502 ORTHO05D005579 1.1e-273 946.8 794 60.8
CiPaw.01G063800 Carya illinoinensis HOM05D004502 ORTHO05D005579 1.7e-271 939.5 828 58.1
QL04p054124 Quercus lobata HOM05D004502 ORTHO05D005579 1.7e-271 939.5 816 58.6
Atru.chr5.526 Acer truncatum HOM05D004502 ORTHO05D005579 2.2e-271 939.1 830 56.7
Cfa003897 Carpinus fangiana HOM05D004502 ORTHO05D005579 2.3e-268 929.1 771 60.6
TWI23G1305 Tripterygium wilfordii HOM05D004502 ORTHO05D005579 4.4e-267 924.9 823 57.4
GSVIVG01027000001 Vitis vinifera HOM05D004502 ORTHO05D005579 9.8e-267 923.7 800 58.2
Eucgr.E00113 Eucalyptus grandis HOM05D004502 ORTHO05D005579 4.1e-265 918.3 820 57.4
PGR042G2088 Punica granatum HOM05D004502 ORTHO05D005579 1.2e-261 906.7 793 57.6
Medtr8g028875 Medicago truncatula HOM05D004502 ORTHO05D005579 1.0e-260 903.7 796 55.4
Glyma.18G235400 Glycine max HOM05D004502 ORTHO05D005579 2.3e-260 902.5 816 55.8
Hma1.2p1_0071F.1_g037745 Hydrangea macrophylla HOM05D004502 ORTHO05D005579 3.0e-260 902.1 782 56.5
Glyma.07G068700 Glycine max HOM05D004502 ORTHO05D005579 1.2e-259 900.2 825 54.4
Duzib133G0971 Durio zibethinus HOM05D004502 ORTHO05D005579 4.4e-259 898.3 821 55.7
Gorai.004G159100 Gossypium raimondii HOM05D004502 ORTHO05D005579 5.4e-257 891.3 830 54.3
Glyma.09G257000 Glycine max HOM05D004502 ORTHO05D005579 7.0e-257 891.0 816 55.0
Lj3g0021790 Lotus japonicus HOM05D004502 ORTHO05D005579 9.2e-257 890.6 826 53.6
Hund16660 Selenicereus undatus HOM05D004502 ORTHO05D005579 2.3e-255 885.9 820 54.5
Sabra14G0063300 Salix brachista HOM05D004502 ORTHO05D005579 6.6e-255 884.4 812 56.9
VMungo1383G3442 Vigna mungo HOM05D004502 ORTHO05D005579 1.1e-254 883.6 819 55.2
Manes.01G254800 Manihot esculenta HOM05D004502 ORTHO05D005579 1.5e-254 883.2 740 61.2
MD07G1133800 Malus domestica HOM05D004502 ORTHO05D005579 2.5e-254 882.5 802 56.5
Gohir.D11G095000 Gossypium hirsutum HOM05D004502 ORTHO05D005579 4.3e-254 881.7 828 54.0
RcHm_v2.0_Chr1g0356801 Rosa chinensis HOM05D004502 ORTHO05D005579 2.1e-253 879.4 826 54.7
Gorai.007G101400 Gossypium raimondii HOM05D004502 ORTHO05D005579 2.8e-253 879.0 828 53.7
CsaV3_6G000710 Cucumis sativus L. HOM05D004502 ORTHO05D005579 1.0e-252 877.1 805 55.2
VMungo0331G1775 Vigna mungo HOM05D004502 ORTHO05D005579 4.0e-252 875.2 792 54.9
Lalb_Chr17g0339421 Lupinus albus HOM05D004502 ORTHO05D005579 8.9e-252 874.0 828 53.6
Phvul.010G100800 Phaseolus vulgaris HOM05D004502 ORTHO05D005579 1.2e-251 873.6 828 53.9
Nn1g01586 Nelumbo nucifera HOM05D004502 ORTHO05D005579 2.0e-251 872.8 829 53.7
TPR.G37813 Trifolium pratense HOM05D004502 ORTHO05D005579 2.0e-251 872.8 797 54.1
Dinv32500 Davidia involucrata HOM05D004502 ORTHO05D005579 2.6e-251 872.5 872 51.7
FvH4_7g14850 Fragaria vesca HOM05D004502 ORTHO05D005579 3.4e-251 872.1 825 54.1
Thecc.01G356300 Theobroma cacao HOM05D004502 ORTHO05D005579 3.4e-251 872.1 775 56.6
TAR629G1389 Trochodendron aralioides HOM05D004502 ORTHO05D005579 2.2e-250 869.4 838 54.1
arahy.Tifrunner.gnm1.ann1.0GN1Z3 Arachis hypogaea HOM05D004502 ORTHO05D005579 2.9e-250 869.0 826 54.1
Psat3g107400 Pisum sativum HOM05D004502 ORTHO05D005579 4.9e-250 868.2 799 53.9
arahy.Tifrunner.gnm1.ann1.V8X9PU Arachis hypogaea HOM05D004502 ORTHO05D005579 1.4e-249 866.7 828 53.6
Actinidia20888 Actinidia chinensis HOM05D004502 ORTHO05D005579 3.2e-249 865.5 845 54.3
Migut.B01778 Erythranthe guttata HOM05D004502 ORTHO05D005579 1.2e-248 863.6 777 55.1
Duzib138G1080 Durio zibethinus HOM05D004502 ORTHO05D005579 2.7e-248 862.4 778 57.3
Sed0014632 Sechium edule HOM05D004502 ORTHO05D005579 7.8e-248 860.9 807 53.8
CANSAT56G0477 Cannabis sativa HOM05D004502 ORTHO05D005579 2.5e-246 855.9 754 57.2
HanXRQChr17g0562371 Helianthus annuus HOM05D004502 ORTHO05D005579 1.1e-244 850.5 807 53.5
Cc02_g38300 Coffea canephora HOM05D004502 ORTHO05D005579 1.8e-244 849.7 795 54.2
Lsat_1_v5_gn_4_34660 Lactuca sativa HOM05D004502 ORTHO05D005579 8.9e-244 847.4 774 54.7
Actinidia14191 Actinidia chinensis HOM05D004502 ORTHO05D005579 3.4e-243 845.5 845 52.7
arahy.Tifrunner.gnm1.ann1.C1BLFK Arachis hypogaea HOM05D004502 ORTHO05D005579 7.5e-243 844.3 829 52.7
FAN01G2073 Fragaria x ananassa HOM05D004502 ORTHO05D005579 9.8e-243 844.0 829 53.1
FAN10G2351 Fragaria x ananassa HOM05D004502 ORTHO05D005579 1.3e-242 843.6 829 53.0
Rhsim07G0013000 Rhododendron simsii HOM05D004502 ORTHO05D005579 4.9e-242 841.6 841 53.0
Peaxi162Scf00020g01028 Petunia axillaris HOM05D004502 ORTHO05D005579 1.9e-241 839.7 806 53.0
Nn6g33342 Nelumbo nucifera HOM05D004502 ORTHO05D005579 1.6e-240 836.6 775 55.4
ECA234G4483 Erigeron canadensis HOM05D004502 ORTHO05D005579 2.0e-240 836.3 789 52.9
Sed0001889 Sechium edule HOM05D004502 ORTHO05D005579 7.8e-240 834.3 807 53.4
Oeu052960.2 Olea europaea HOM05D004502 ORTHO05D005579 8.6e-239 830.9 815 52.9
FAN06G1095 Fragaria x ananassa HOM05D004502 ORTHO05D005579 1.1e-238 830.5 853 51.0
Gohir.A11G090500 Gossypium hirsutum HOM05D004502 ORTHO05D005579 1.9e-238 829.7 780 53.7
AUR62004387 Chenopodium quinoa HOM05D004502 ORTHO05D005579 4.7e-237 825.1 775 52.5
SalBow3G3684 Salvia bowleyana HOM05D004502 ORTHO05D005579 1.1e-236 823.9 789 52.6
ClCG06G003550 Citrullus lanatus HOM05D004502 ORTHO05D005579 2.3e-236 822.8 808 52.8
FAN06G0667 Fragaria x ananassa HOM05D004502 ORTHO05D005579 8.9e-236 820.8 825 51.9
Phvul.008G060500 Phaseolus vulgaris HOM05D004502 ORTHO05D005579 3.4e-235 818.9 742 56.2
Solyc01g094860.4 Solanum lycopersicum HOM05D004502 ORTHO05D005579 1.9e-233 813.1 785 53.0
Sc01g0003530 Simmondsia chinensis HOM05D004502 ORTHO05D005579 4.1e-233 812.0 760 53.3
SGA_v2.0_scaffold95G28821 Striga asiatica HOM05D004502 ORTHO05D005579 5.4e-233 811.6 801 51.4
Sopen01g038640 Solanum pennellii HOM05D004502 ORTHO05D005579 7.1e-233 811.2 785 53.4
HanXRQChr06g0170231 Helianthus annuus HOM05D004502 ORTHO05D005579 9.2e-233 810.8 827 50.9
CSS0020518 Camellia sinensis var. sinensis HOM05D004502 ORTHO05D005579 1.2e-232 810.4 772 53.5
MSTRG.17285 Avicennia marina HOM05D004502 ORTHO05D005579 1.0e-231 807.4 793 52.2
Lj9C585G14 Lonicera japonica HOM05D004502 ORTHO05D005579 3.9e-231 805.4 803 52.3
TPR.G17909 Trifolium pratense HOM05D004502 ORTHO05D005579 1.9e-230 803.1 833 49.6
Aqoxy7G00260 Aquilegia oxysepala HOM05D004502 ORTHO05D005579 8.1e-229 797.7 837 49.6
CAN.G78.100 Capsicum annuum HOM05D004502 ORTHO05D005579 1.4e-228 797.0 808 52.5
arahy.Tifrunner.gnm1.ann1.04AGHE Arachis hypogaea HOM05D004502 ORTHO05D005579 4.0e-228 795.4 825 50.8
COL.COLO4_12736 Corchorus olitorius HOM05D004502 ORTHO05D005579 5.2e-228 795.0 683 58.4
FAN10G2492 Fragaria x ananassa HOM05D004502 ORTHO05D005579 3.4e-227 792.3 829 50.8
Ca_23605_v3 Cicer arietinum L. HOM05D004502 ORTHO05D005579 6.4e-226 788.1 731 53.4
ECA236G0795 Erigeron canadensis HOM05D004502 ORTHO05D005579 3.5e-224 782.3 773 51.9
Prupe.2G173600 Prunus persica HOM05D004502 ORTHO05D005579 1.5e-222 776.9 716 56.0
PSO478G3176 Papaver somniferum HOM05D004502 ORTHO05D005579 7.3e-222 774.6 800 50.4
vmacro13259 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 2.1e-221 773.1 777 52.1
PGSC0003DMG400000181 Solanum tuberosum HOM05D004502 ORTHO05D005579 1.2e-219 767.3 792 50.8
Ca_00829_v3 Cicer arietinum L. HOM05D004502 ORTHO05D005579 8.4e-218 761.1 698 54.6
PSO782G3525 Papaver somniferum HOM05D004502 ORTHO05D005579 1.9e-217 760.0 786 50.4
Rhsim01G0146800 Rhododendron simsii HOM05D004502 ORTHO05D005579 4.9e-210 735.3 847 47.6
Gohir.D08G153200 Gossypium hirsutum HOM05D004502 ORTHO05D005579 2.4e-209 733.0 690 53.6
Psat4g212960 Pisum sativum HOM05D004502 ORTHO05D005579 2.4e-201 706.4 658 52.7
Nitab4.5_0010258g0020 Nicotiana tabacum HOM05D004502 ORTHO05D005579 2.1e-200 703.4 773 49.5
Os10g0446200 Oryza sativa ssp. japonica HOM05D004502 ORTHO05D005579 1.8e-196 690.3 821 44.1
HPP92_022633 Vanilla planifolia HOM05D004502 ORTHO05D005579 4.5e-195 685.6 824 43.7
AUR62022593 Chenopodium quinoa HOM05D004502 ORTHO05D005579 7.9e-192 674.9 675 50.4
ATR0680G297 Amborella trichopoda HOM05D004502 ORTHO05D005579 1.5e-190 670.6 858 42.4
QL12p032431 Quercus lobata HOM05D004502 ORTHO05D005579 7.6e-187 658.3 787 43.8
EL10Ac1g00390 Beta vulgaris HOM05D004502 ORTHO05D005579 1.1e-185 654.4 831 43.8
MBI18_g32047_MAGBIO Magnolia biondii HOM05D004502 ORTHO05D005579 1.0e-183 647.9 945 40.8
vmacro20915 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 4.8e-181 639.0 658 50.3
TWI60G0172 Tripterygium wilfordii HOM05D004502 ORTHO05D005579 5.0e-178 629.0 787 43.7
MELO3C021198.2 Cucumis melo HOM05D004502 ORTHO05D005579 7.9e-176 621.7 524 58.4
SHI13432 Sapria himalayana HOM05D004502 ORTHO05D005579 2.8e-173 613.2 714 48.5
COL.COLO4_34496 Corchorus olitorius HOM05D004502 ORTHO05D005579 1.5e-171 607.4 760 43.3
Nitab4.5_0000583g0350 Nicotiana tabacum HOM05D004502 ORTHO05D005579 1.5e-171 607.4 832 42.5
MD01G1067200 Malus domestica HOM05D004502 ORTHO05D005579 4.5e-163 579.3 579 52.0
Zm00001eb222430 Zea mays HOM05D004502 ORTHO05D005579 1.9e-161 573.9 685 45.0
Aqoxy7G00261 Aquilegia oxysepala HOM05D004502 ORTHO05D005579 5.5e-161 572.4 717 43.8
FAN03G0719 Fragaria x ananassa HOM05D004502 ORTHO05D005579 7.8e-139 498.8 726 40.5
Ah.05g180370 Amaranthus hybridus HOM05D004502 ORTHO05D005579 4.4e-134 483.0 529 47.8
DCAR_008618 Daucus carota HOM05D004502 ORTHO05D005579 9.2e-132 475.3 391 61.6
Glyma.16G034551 Glycine max HOM05D004502 ORTHO05D005579 1.6e-128 464.5 342 64.9
Gohir.A08G131800 Gossypium hirsutum HOM05D004502 ORTHO05D005579 4.0e-127 459.9 348 65.2
TAR375G0606 Trochodendron aralioides HOM05D004502 ORTHO05D005579 2.1e-120 437.6 450 48.7
AUR62010714 Chenopodium quinoa HOM05D004502 ORTHO05D005579 6.8e-119 432.6 727 36.6
Gohir.A08G131900 Gossypium hirsutum HOM05D004502 ORTHO05D005579 1.3e-101 375.2 433 45.0
unitig_26.g9298 Utricularia gibba HOM05D004502 ORTHO05D005579 6.4e-101 372.9 318 57.2
Mapoly0035s0107 Marchantia polymorpha HOM05D004502 ORTHO05D005579 1.6e-96 358.2 781 30.0
Haze_08811 Corylus avellana HOM05D004502 ORTHO05D005579 4.2e-92 343.6 623 35.2
Pp3c10_11170 Physcomitrium patens HOM05D004502 ORTHO05D005579 7.9e-91 339.3 913 28.3
Glyma.16G034476 Glycine max HOM05D004502 ORTHO05D005579 1.8e-87 328.2 372 44.1
unitig_26.g9297 Utricularia gibba HOM05D004502 ORTHO05D005579 9.6e-81 305.8 397 42.1
Hund14837 Selenicereus undatus HOM05D004502 ORTHO05D005579 8.4e-77 292.7 457 38.1
CDE06G0820 Ceratophyllum demersum HOM05D004502 ORTHO05D005579 4.1e-71 273.9 351 42.2
Cc08_g14990 Coffea canephora HOM05D004502 ORTHO05D005579 4.6e-67 260.4 306 44.4
MELO3C021197.2 Cucumis melo HOM05D004502 ORTHO05D005579 2.4e-63 248.1 254 49.6
SEGI_07374 Sequoiadendron giganteum HOM05D004502 ORTHO05D005579 1.4e-58 232.3 512 30.5
COL.COLO4_28934 Corchorus olitorius HOM05D004502 ORTHO05D005579 2.2e-53 214.9 201 55.7
MD01G1067000 Malus domestica HOM05D004502 ORTHO05D005579 6.3e-48 196.8 180 58.9
vmacro20916 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 3.8e-45 187.6 177 55.9
CBR_g17145 Chara braunii HOM05D004502 ORTHO05D005579 8.0e-27 126.7 117 45.3
MELO3C031211.2 Cucumis melo HOM05D004502 ORTHO05D005579 2.3e-26 125.2 143 45.5
Hund14845 Selenicereus undatus HOM05D004502 ORTHO05D005579 7.0e-23 113.6 110 52.7
Hund14838 Selenicereus undatus HOM05D004502 ORTHO05D005579 4.0e-18 97.8 118 39.8
CDE06G0272 Ceratophyllum demersum HOM05D004502 ORTHO05D005579 2.6e-17 95.1 87 58.6
TPR.G24958 Trifolium pratense HOM05D004502 ORTHO05D005579 1.9e-12 79.0 107 41.1
arahy.Tifrunner.gnm1.ann1.YV6W0W Arachis hypogaea HOM05D000064 ORTHO05D001480 6.8e-10 70.5 52 57.7
arahy.Tifrunner.gnm1.ann1.I8C0YZ Arachis hypogaea HOM05D000064 ORTHO05D001480 2.6e-09 68.6 48 58.3
MELO3C034807.2 Cucumis melo HOM05D004502 ORTHO05D011879 4.4e-09 67.8 79 44.3
arahy.Tifrunner.gnm1.ann1.R57FTB Arachis hypogaea HOM05D004502 ORTHO05D002623 2.9e-08 65.1 31 87.1
SEGI_31877 Sequoiadendron giganteum HOM05D004502 ORTHO05D005579 6.4e-08 63.9 66 42.4
Thecc.03G282200 Theobroma cacao HOM05D004502 ORTHO05D005579 2.4e-07 62.0 200 28.0
Hund14846 Selenicereus undatus HOM05D004502 ORTHO05D005579 1.6e-06 59.3 65 38.5


User provided reference genes

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