Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR140910 Cardamine hirsuta HOM05D004815 ORTHO05D005742 5.4e-170 600.9 303 100.0
AT2G45690 Arabidopsis thaliana HOM05D004815 ORTHO05D005742 1.8e-133 479.6 293 82.6
Carub.0004s2834 Capsella rubella HOM05D004815 ORTHO05D005742 9.1e-133 477.2 295 83.1
AL4G44860 Arabidopsis lyrata HOM05D004815 ORTHO05D005742 5.9e-132 474.6 293 83.3
Thhalv10001499m.g Eutrema salsugineum HOM05D004815 ORTHO05D005742 1.3e-126 456.8 293 82.6
Sp4g27730 Schrenkiella parvula HOM05D004815 ORTHO05D005742 2.8e-126 455.7 293 80.5
A05p05650 Brassica napus HOM05D004815 ORTHO05D005742 2.4e-125 452.6 292 81.5
BraA05t19537Z Brassica rapa HOM05D004815 ORTHO05D005742 9.1e-125 450.7 292 81.2
BcaB01g03258 Brassica carinata HOM05D004815 ORTHO05D005742 1.4e-122 443.4 292 80.5
BcaC02g12192 Brassica carinata HOM05D004815 ORTHO05D005742 1.9e-122 443.0 291 80.1
C04p06610 Brassica napus HOM05D004815 ORTHO05D005742 1.9e-122 443.0 291 80.1
BolC4t22283H Brassica oleracea HOM05D004815 ORTHO05D005742 5.5e-122 441.4 291 79.7
A03p25310 Brassica napus HOM05D004815 ORTHO05D005742 2.3e-120 436.0 290 78.3
C03p30200 Brassica napus HOM05D004815 ORTHO05D005742 9.7e-119 430.6 293 77.8
BcaC01g05112 Brassica carinata HOM05D004815 ORTHO05D005742 1.6e-116 423.3 294 76.9
BolC3t15369H Brassica oleracea HOM05D004815 ORTHO05D005742 1.3e-115 420.2 293 76.5
Aa31LG1G27160 Aethionema arabicum HOM05D004815 ORTHO05D005742 6.7e-112 407.9 291 75.3
BcaB02g09018 Brassica carinata HOM05D004815 ORTHO05D005742 3.1e-109 399.1 304 74.7
BraA03t11735Z Brassica rapa HOM05D004815 ORTHO05D005742 9.1e-109 397.5 291 72.5
THA.LOC104817269 Tarenaya hassleriana HOM05D004815 ORTHO05D005742 3.5e-92 342.4 296 62.5
Haze_16704 Corylus avellana HOM05D004815 ORTHO05D005742 1.0e-88 330.9 298 61.4
GSVIVG01027589001 Vitis vinifera HOM05D004815 ORTHO05D005742 5.2e-88 328.6 299 60.5
Cfa001810 Carpinus fangiana HOM05D004815 ORTHO05D005742 4.9e-86 322.0 300 59.3
Thecc.01G370200 Theobroma cacao HOM05D004815 ORTHO05D005742 9.2e-85 317.8 297 59.6
Rhsim07G0022400 Rhododendron simsii HOM05D004815 ORTHO05D005742 5.9e-84 315.1 299 55.9
Duzib138G1778 Durio zibethinus HOM05D004815 ORTHO05D005742 1.3e-83 313.9 309 56.6
Gohir.A07G144600 Gossypium hirsutum HOM05D004815 ORTHO05D005742 3.9e-83 312.4 300 58.0
Cpa.g.sc18.178 Carica papaya HOM05D004815 ORTHO05D005742 6.6e-83 311.6 294 59.2
Actinidia31455 Actinidia chinensis HOM05D004815 ORTHO05D005742 8.6e-83 311.2 300 57.3
Potri.002G152300 Populus trichocarpa HOM05D004815 ORTHO05D005742 8.6e-83 311.2 298 59.1
Manes.05G040900 Manihot esculenta HOM05D004815 ORTHO05D005742 1.1e-82 310.8 300 57.7
Duzib133G0793 Durio zibethinus HOM05D004815 ORTHO05D005742 4.3e-82 308.9 299 57.5
FvH4_7g12840 Fragaria vesca HOM05D004815 ORTHO05D005742 5.6e-82 308.5 297 56.9
FAN06G3277 Fragaria x ananassa HOM05D004815 ORTHO05D005742 5.6e-82 308.5 297 56.9
FAN06G3416 Fragaria x ananassa HOM05D004815 ORTHO05D005742 5.6e-82 308.5 297 56.9
Potri.014G078300 Populus trichocarpa HOM05D004815 ORTHO05D005742 5.6e-82 308.5 291 58.1
FAN01G1324 Fragaria x ananassa HOM05D004815 ORTHO05D005742 9.5e-82 307.8 297 57.2
vmacro13348 Vaccinium macrocarpon HOM05D004815 ORTHO05D005742 9.5e-82 307.8 297 57.9
Sabra14G0053800 Salix brachista HOM05D004815 ORTHO05D005742 6.2e-81 305.1 293 58.4
Ciclev10020702m.g Citrus clementina HOM05D004815 ORTHO05D005742 1.1e-80 304.3 302 58.3
RcHm_v2.0_Chr1g0351921 Rosa chinensis HOM05D004815 ORTHO05D005742 1.1e-80 304.3 296 56.8
Lj3g0020425 Lotus japonicus HOM05D004815 ORTHO05D005742 1.8e-80 303.5 298 56.0
Gorai.001G172600 Gossypium raimondii HOM05D004815 ORTHO05D005742 2.3e-80 303.1 300 57.3
CiPaw.01G257600 Carya illinoinensis HOM05D004815 ORTHO05D005742 4.0e-80 302.4 300 56.3
Gohir.D07G150500 Gossypium hirsutum HOM05D004815 ORTHO05D005742 5.2e-80 302.0 300 57.3
FAN10G2694 Fragaria x ananassa HOM05D004815 ORTHO05D005742 6.8e-80 301.6 296 56.4
Actinidia09581 Actinidia chinensis HOM05D004815 ORTHO05D005742 8.9e-80 301.2 294 55.8
MD02G1195800 Malus domestica HOM05D004815 ORTHO05D005742 1.5e-79 300.4 302 56.3
TWI23G0970 Tripterygium wilfordii HOM05D004815 ORTHO05D005742 2.6e-79 299.7 295 57.6
Manes.01G263200 Manihot esculenta HOM05D004815 ORTHO05D005742 4.4e-79 298.9 299 56.5
TAR629G0568 Trochodendron aralioides HOM05D004815 ORTHO05D005742 7.5e-79 298.1 297 56.2
DCAR_006900 Daucus carota HOM05D004815 ORTHO05D005742 9.8e-79 297.7 288 56.2
Atru.chr5.381_Atru.chr5.382 Acer truncatum HOM05D004815 ORTHO05D005742 1.3e-78 297.4 293 58.7
CANSAT56G0719 Cannabis sativa HOM05D004815 ORTHO05D005742 1.3e-78 297.4 297 57.2
MBI04_g28567_MAGBIO Magnolia biondii HOM05D004815 ORTHO05D005742 1.7e-78 297.0 296 57.4
Psat4g200880 Pisum sativum HOM05D004815 ORTHO05D005742 2.2e-78 296.6 293 54.6
QL08p050919 Quercus lobata HOM05D004815 ORTHO05D005742 8.3e-78 294.7 298 55.7
Medtr8g033040 Medicago truncatula HOM05D004815 ORTHO05D005742 1.4e-77 293.9 293 55.3
Glyma.03G018700 Glycine max HOM05D004815 ORTHO05D005742 4.1e-77 292.4 298 54.7
Ca_23774_v3 Cicer arietinum L. HOM05D004815 ORTHO05D005742 5.4e-77 292.0 293 53.2
TPR.G17590 Trifolium pratense HOM05D004815 ORTHO05D005742 9.2e-77 291.2 296 54.4
TPR.G17395 Trifolium pratense HOM05D004815 ORTHO05D005742 1.6e-76 290.4 295 54.9
Cc02_g37080 Coffea canephora HOM05D004815 ORTHO05D005742 3.5e-76 289.3 297 54.2
Lj7C524T7 Lonicera japonica HOM05D004815 ORTHO05D005742 3.5e-76 289.3 295 55.3
MELO3C022521.2 Cucumis melo HOM05D004815 ORTHO05D005742 6.6e-75 285.0 296 53.7
Lalb_Chr17g0340041 Lupinus albus HOM05D004815 ORTHO05D005742 6.6e-75 285.0 297 51.5
VMungo0331G0142 Vigna mungo HOM05D004815 ORTHO05D005742 8.6e-75 284.6 297 53.5
Glyma.07G080200 Glycine max HOM05D004815 ORTHO05D005742 2.5e-74 283.1 298 53.7
TWI59G0538 Tripterygium wilfordii HOM05D004815 ORTHO05D005742 2.5e-74 283.1 300 54.3
TAR636G2513 Trochodendron aralioides HOM05D004815 ORTHO05D005742 3.3e-74 282.7 297 54.5
Nitab4.5_0013229g0020 Nicotiana tabacum HOM05D004815 ORTHO05D005742 2.1e-73 280.0 292 54.5
CsaV3_6G005940 Cucumis sativus L. HOM05D004815 ORTHO05D005742 3.6e-73 279.3 296 53.7
Oeu059223.1 Olea europaea HOM05D003859 ORTHO05D004927 4.7e-73 278.9 297 54.2
Phvul.010G089200 Phaseolus vulgaris HOM05D004815 ORTHO05D005742 6.2e-73 278.5 297 52.9
Peaxi162Scf00021g00232 Petunia axillaris HOM05D004815 ORTHO05D005742 8.1e-73 278.1 297 53.5
Migut.B01673 Erythranthe guttata HOM05D004815 ORTHO05D005742 1.8e-72 276.9 286 53.1
Lsat_1_v5_gn_7_8041 Lactuca sativa HOM05D004815 ORTHO05D005742 5.2e-72 275.4 293 51.2
Sc02g0002260 Simmondsia chinensis HOM05D004815 ORTHO05D005742 5.2e-72 275.4 295 51.2
PGR031G2979 Punica granatum HOM05D004815 ORTHO05D005742 8.9e-72 274.6 297 53.2
CAN.G170.62 Capsicum annuum HOM05D004815 ORTHO05D005742 2.0e-71 273.5 298 52.7
Cc09_g02920 Coffea canephora HOM05D004815 ORTHO05D005742 2.0e-71 273.5 292 52.7
SGA_v2.0_scaffold153G37057 Striga asiatica HOM05D004815 ORTHO05D005742 2.0e-71 273.5 288 52.4
AUR62033376 Chenopodium quinoa HOM05D004815 ORTHO05D005742 2.6e-71 273.1 301 53.8
Sed0027777 Sechium edule HOM05D004815 ORTHO05D005742 3.4e-71 272.7 297 52.9
PGSC0003DMG400000005 Solanum tuberosum HOM05D004815 ORTHO05D005742 3.4e-71 272.7 298 52.3
SalBow7G0216 Salvia bowleyana HOM05D004815 ORTHO05D005742 4.4e-71 272.3 294 52.4
Aqoxy7G00483 Aquilegia oxysepala HOM05D004815 ORTHO05D005742 9.9e-71 271.2 298 54.7
Prupe.2G152800 Prunus persica HOM05D004815 ORTHO05D005742 1.7e-70 270.4 265 56.2
Solyc01g091900.3 Solanum lycopersicum HOM05D004815 ORTHO05D005742 2.2e-70 270.0 297 51.2
HanXRQChr04g0121731 Helianthus annuus HOM05D004815 ORTHO05D005742 1.1e-69 267.7 293 50.9
EL10Ac1g00976 Beta vulgaris HOM05D004815 ORTHO05D005742 1.4e-69 267.3 298 52.3
Lalb_Chr10g0097591 Lupinus albus HOM05D004815 ORTHO05D005742 1.4e-69 267.3 298 50.0
PSO478G4379 Papaver somniferum HOM05D004815 ORTHO05D005742 2.4e-69 266.5 295 54.2
arahy.Tifrunner.gnm1.ann1.32Q5MD Arachis hypogaea HOM05D004815 ORTHO05D005742 1.2e-68 264.2 296 51.4
arahy.Tifrunner.gnm1.ann1.GZV6IQ Arachis hypogaea HOM05D004815 ORTHO05D005742 1.6e-68 263.8 291 51.9
Sopen01g037670 Solanum pennellii HOM05D004815 ORTHO05D005742 3.5e-68 262.7 289 52.2
Sabra02G0120600 Salix brachista HOM05D004815 ORTHO05D005742 2.3e-67 260.0 298 52.0
MD02G1195700 Malus domestica HOM05D004815 ORTHO05D005742 3.0e-67 259.6 295 53.2
PSO782G2788 Papaver somniferum HOM05D004815 ORTHO05D005742 3.9e-67 259.2 295 53.6
ECA236G5005 Erigeron canadensis HOM05D004815 ORTHO05D005742 8.6e-67 258.1 293 50.2
Nn1g01309 Nelumbo nucifera HOM05D004815 ORTHO05D005742 1.9e-66 256.9 289 52.6
Sed0004795 Sechium edule HOM05D004815 ORTHO05D005742 7.3e-66 255.0 268 53.7
MSTRG.20784 Avicennia marina HOM05D004815 ORTHO05D005742 2.8e-65 253.1 293 49.8
Ciclev10023945m.g Citrus clementina HOM05D004815 ORTHO05D005742 6.2e-65 251.9 294 51.0
Lalb_Chr19g0127171 Lupinus albus HOM05D004815 ORTHO05D005742 1.1e-64 251.1 305 47.9
HanXRQChr06g0169351 Helianthus annuus HOM05D004815 ORTHO05D005742 3.1e-64 249.6 292 50.3
ClCG06G000170 Citrullus lanatus HOM05D004815 ORTHO05D005742 7.6e-63 245.0 274 52.2
Peaxi162Scf00114g00211 Petunia axillaris HOM05D004815 ORTHO05D005742 9.9e-63 244.6 300 47.3
Ah.15g094120 Amaranthus hybridus HOM05D001215 ORTHO05D001387 2.9e-62 243.0 298 48.7
CAN.G919.13 Capsicum annuum HOM05D004815 ORTHO05D005742 1.4e-61 240.7 301 47.2
unitig_749.g14360 Utricularia gibba HOM05D003518 ORTHO05D005164 5.4e-61 238.8 290 49.7
Hund27330 Selenicereus undatus HOM05D004815 ORTHO05D005742 9.2e-61 238.0 292 49.3
Solyc06g074460.4 Solanum lycopersicum HOM05D004815 ORTHO05D005742 3.5e-60 236.1 301 46.5
Nitab4.5_0005459g0020 Nicotiana tabacum HOM05D004815 ORTHO05D005742 1.0e-59 234.6 293 49.1
Sopen06g030930 Solanum pennellii HOM05D004815 ORTHO05D005742 1.0e-59 234.6 301 46.2
AUR62004281 Chenopodium quinoa HOM05D004815 ORTHO05D005742 1.7e-59 233.8 254 52.8
Nitab4.5_0001901g0030 Nicotiana tabacum HOM05D004815 ORTHO05D005742 3.0e-59 233.0 298 47.7
CSS0047010 Camellia sinensis var. sinensis HOM05D004815 ORTHO05D005742 1.5e-58 230.7 280 49.6
Lalb_Chr01g0021231 Lupinus albus HOM05D004815 ORTHO05D005742 3.3e-58 229.6 293 46.8
Os02g0123200 Oryza sativa ssp. japonica HOM05D004815 ORTHO05D005742 6.2e-57 225.3 303 43.6
CSS0023679 Camellia sinensis var. sinensis HOM05D004815 ORTHO05D005742 3.1e-56 223.0 294 47.3
HPP92_004960 Vanilla planifolia HOM05D004815 ORTHO05D005742 6.9e-56 221.9 295 45.1
Zm00001eb208530 Zea mays HOM05D004815 ORTHO05D005742 1.2e-55 221.1 306 43.1
Eucgr.D02393 Eucalyptus grandis HOM05D004815 ORTHO05D005742 8.7e-51 204.9 206 54.4
SHI13492 Sapria himalayana HOM05D004815 ORTHO05D005742 1.6e-49 200.7 272 45.6
PGSC0003DMG400007146 Solanum tuberosum HOM05D004815 ORTHO05D005742 1.2e-47 194.5 269 44.6
Nitab4.5_0001127g0010 Nicotiana tabacum HOM05D004815 ORTHO05D005742 1.3e-46 191.0 272 45.6
Dinv43746 Davidia involucrata HOM05D004815 ORTHO05D005742 8.7e-43 178.3 245 46.9
SEGI_15318 Sequoiadendron giganteum HOM05D004815 ORTHO05D005742 8.1e-41 171.8 304 37.8
SMO147G0187 Selaginella moellendorffii HOM05D004815 ORTHO05D005742 5.3e-40 169.1 297 36.7
Mapoly0047s0037 Marchantia polymorpha HOM05D004815 ORTHO05D005742 1.3e-38 164.5 332 35.5
COL.COLO4_12639 Corchorus olitorius HOM05D004815 ORTHO05D005742 1.7e-38 164.1 197 50.3
Eucgr.D02410 Eucalyptus grandis HOM05D004815 ORTHO05D005742 9.3e-37 158.3 203 48.3
AagrBONN_evm.TU.Sc2ySwM_228.5506 Anthoceros agrestis HOM05D004815 ORTHO05D005742 1.3e-35 154.5 325 33.2
Pp3c20_6130 Physcomitrium patens HOM05D004815 ORTHO05D005742 6.7e-35 152.1 304 34.5
Eucgr.D02397 Eucalyptus grandis HOM05D004815 ORTHO05D005742 8.7e-35 151.8 173 49.7
Dinv32412 Davidia involucrata HOM05D004815 ORTHO05D005742 6.2e-33 145.6 180 48.9
CDE11G0368 Ceratophyllum demersum HOM05D004815 ORTHO05D005742 3.4e-31 139.8 178 44.4
Gohir.A11G084200 Gossypium hirsutum HOM05D004815 ORTHO05D005742 1.2e-28 131.3 214 41.6
ATR0757G181 Amborella trichopoda HOM05D004815 ORTHO05D005742 1.3e-27 127.9 109 57.8
AagrBONN_evm.TU.Sc2ySwM_369.172 Anthoceros agrestis HOM05D004815 ORTHO05D005742 5.1e-27 125.9 310 30.3
Aa31LG6G10720 Aethionema arabicum HOM05D004815 ORTHO05D005742 1.1e-26 124.8 110 63.6
ATR0757G223 Amborella trichopoda HOM05D004815 ORTHO05D005742 6.9e-24 115.5 197 39.6
CDE11G0585 Ceratophyllum demersum HOM05D004815 ORTHO05D005742 1.4e-16 91.3 97 47.4
C07p07230 Brassica napus HOM05D004815 ORTHO05D005742 2.0e-15 87.4 58 72.4
FAN10G0991 Fragaria x ananassa HOM05D004815 ORTHO05D005742 8.5e-14 82.0 77 57.1
COL.COLO4_24134 Corchorus olitorius HOM05D000638 ORTHO05D000801 4.7e-12 76.3 76 52.6
CBR_g3181 Chara braunii HOM05D004815 ORTHO05D005742 1.3e-09 68.2 138 34.1
PRCOL_00005618 Prasinoderma coloniale HOM05D004815 ORTHO05D005742 1.1e-08 65.1 253 24.1
RcHm_v2.0_Chr1g0351871 Rosa chinensis HOM05D004815 ORTHO05D005742 2.4e-08 63.9 39 69.2
Glyma.04G148600 Glycine max HOM05D004815 ORTHO05D005742 1.5e-07 61.2 37 73.0
Aa31sc1021G10 Aethionema arabicum HOM05D004815 ORTHO05D005742 2.0e-07 60.8 34 79.4


User provided reference genes

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