Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR140520 Cardamine hirsuta HOM05D005612 ORTHO05D007014 3.3e-115 418.3 200 100.0
AL4G44420 Arabidopsis lyrata HOM05D005612 ORTHO05D007014 2.1e-109 399.1 200 96.0
Thhalv10001485m.g Eutrema salsugineum HOM05D005612 ORTHO05D007014 6.0e-109 397.5 200 95.0
BraA03t11718Z Brassica rapa HOM05D005612 ORTHO05D007014 3.9e-108 394.8 200 94.5
AT2G45320 Arabidopsis thaliana HOM05D005612 ORTHO05D007014 1.9e-107 392.5 200 95.0
C03p30020 Brassica napus HOM05D005612 ORTHO05D007014 1.9e-107 392.5 200 93.5
Sp4g27340 Schrenkiella parvula HOM05D005612 ORTHO05D007014 3.3e-107 391.7 200 94.0
Carub.0004s2795 Capsella rubella HOM05D005612 ORTHO05D007014 1.3e-106 389.8 199 94.0
BcaB01g03271 Brassica carinata HOM05D005612 ORTHO05D007014 3.7e-106 388.3 200 92.5
A03p25180 Brassica napus HOM05D005612 ORTHO05D007014 3.7e-106 388.3 200 93.0
BcaC01g05140 Brassica carinata HOM05D005612 ORTHO05D007014 6.9e-105 384.0 200 92.0
BolC3t15349H Brassica oleracea HOM05D005612 ORTHO05D007014 6.9e-105 384.0 200 92.0
Aa31LG1G26830 Aethionema arabicum HOM05D005612 ORTHO05D007014 9.0e-105 383.6 196 92.3
THA.LOC104827614 Tarenaya hassleriana HOM05D005612 ORTHO05D007014 1.3e-98 363.2 201 86.6
AUR62019310 Chenopodium quinoa HOM05D005612 ORTHO05D007014 5.1e-92 341.3 195 80.5
COL.COLO4_12531 Corchorus olitorius HOM05D005612 ORTHO05D007014 5.1e-92 341.3 202 78.7
TWI14G1300 Tripterygium wilfordii HOM05D005612 ORTHO05D007014 6.7e-92 340.9 202 79.2
GSVIVG01027677001 Vitis vinifera HOM05D005612 ORTHO05D007014 9.7e-91 337.0 201 78.6
Cpa.g.sc18.108 Carica papaya HOM05D005612 ORTHO05D007014 1.3e-90 336.7 202 79.7
Duzib138G1608 Durio zibethinus HOM05D005612 ORTHO05D007014 1.3e-90 336.7 202 77.7
Thecc.01G378200 Theobroma cacao HOM05D005612 ORTHO05D007014 1.3e-90 336.7 202 78.7
AUR62000130 Chenopodium quinoa HOM05D005612 ORTHO05D007014 1.6e-90 336.3 195 79.5
QL08p052678 Quercus lobata HOM05D005612 ORTHO05D007014 1.6e-90 336.3 200 77.5
Atru.chr2.2479 Acer truncatum HOM05D005612 ORTHO05D007014 4.8e-90 334.7 202 78.2
Nitab4.5_0000264g0010 Nicotiana tabacum HOM05D005612 ORTHO05D007014 2.4e-89 332.4 190 82.1
Prupe.6G155400 Prunus persica HOM05D005612 ORTHO05D007014 4.1e-89 331.6 202 78.7
RcHm_v2.0_Chr3g0497141 Rosa chinensis HOM05D005612 ORTHO05D007014 4.1e-89 331.6 201 76.6
CSS0047351 Camellia sinensis var. sinensis HOM05D005612 ORTHO05D007014 5.3e-89 331.3 202 77.7
Gohir.D08G156300 Gossypium hirsutum HOM05D005612 ORTHO05D007014 5.3e-89 331.3 202 76.7
Gorai.004G162600 Gossypium raimondii HOM05D005612 ORTHO05D007014 5.3e-89 331.3 202 76.7
Medtr4g053430 Medicago truncatula HOM05D005612 ORTHO05D007014 5.3e-89 331.3 202 78.2
Potri.014G068500 Populus trichocarpa HOM05D005612 ORTHO05D007014 6.9e-89 330.9 202 77.2
vmacro13411 Vaccinium macrocarpon HOM05D005612 ORTHO05D007014 6.9e-89 330.9 202 78.7
FvH4_1g28100 Fragaria vesca HOM05D005612 ORTHO05D007014 9.0e-89 330.5 201 77.1
FAN28G0581 Fragaria x ananassa HOM05D005612 ORTHO05D007014 9.0e-89 330.5 201 76.1
Lalb_Chr03g0039601 Lupinus albus HOM05D005612 ORTHO05D007014 1.5e-88 329.7 201 77.6
TAR375G1134 Trochodendron aralioides HOM05D005612 ORTHO05D007014 2.0e-88 329.3 203 77.8
CsaV3_3G009760 Cucumis sativus L. HOM05D005612 ORTHO05D007014 2.6e-88 328.9 202 75.7
FAN28G2973 Fragaria x ananassa HOM05D005612 ORTHO05D007014 2.6e-88 328.9 201 76.1
Gohir.A08G135500 Gossypium hirsutum HOM05D005612 ORTHO05D007014 2.6e-88 328.9 202 76.2
TPR.G17234 Trifolium pratense HOM05D005612 ORTHO05D007014 2.6e-88 328.9 202 78.2
Dinv43696 Davidia involucrata HOM05D005612 ORTHO05D007014 3.4e-88 328.6 202 77.2
PSO339G2081 Papaver somniferum HOM05D005612 ORTHO05D007014 4.5e-88 328.2 203 77.3
Haze_16797 Corylus avellana HOM05D005612 ORTHO05D007014 5.9e-88 327.8 201 76.6
FAN23G2738 Fragaria x ananassa HOM05D005612 ORTHO05D007014 5.9e-88 327.8 201 75.6
Glyma.12G134000 Glycine max HOM05D005612 ORTHO05D007014 5.9e-88 327.8 202 76.7
FAN26G0204 Fragaria x ananassa HOM05D005612 ORTHO05D007014 1.0e-87 327.0 201 75.6
PSO384G4101 Papaver somniferum HOM05D005612 ORTHO05D007014 1.0e-87 327.0 203 76.8
MD00G1094900 Malus domestica HOM05D005612 ORTHO05D007014 1.3e-87 326.6 200 76.5
Phvul.011G138100 Phaseolus vulgaris HOM05D005612 ORTHO05D007014 1.7e-87 326.2 202 76.2
EL10Ac4g10240 Beta vulgaris HOM05D005612 ORTHO05D007014 2.2e-87 325.9 202 77.2
Glyma.06G270700 Glycine max HOM05D005612 ORTHO05D007014 3.8e-87 325.1 203 75.9
Peaxi162Scf00045g01936 Petunia axillaris HOM05D005612 ORTHO05D007014 5.0e-87 324.7 203 76.4
ClCG05G002330 Citrullus lanatus HOM05D005612 ORTHO05D007014 6.5e-87 324.3 202 75.2
Hma1.2p1_0511F.1_g169190 Hydrangea macrophylla HOM05D005612 ORTHO05D007014 6.5e-87 324.3 202 75.7
Cfa015219 Carpinus fangiana HOM05D005612 ORTHO05D007014 1.1e-86 323.6 201 75.1
Solyc08g006610.3 Solanum lycopersicum HOM05D005612 ORTHO05D007014 1.1e-86 323.6 203 76.4
Nn4g26368 Nelumbo nucifera HOM05D005612 ORTHO05D007014 1.4e-86 323.2 203 74.9
Ciclev10010228m.g Citrus clementina HOM05D005612 ORTHO05D007014 1.9e-86 322.8 197 77.7
Hma1.2p1_2025F.1_g311480 Hydrangea macrophylla HOM05D005612 ORTHO05D007014 1.9e-86 322.8 202 75.2
Psat0s2995g0040 Pisum sativum HOM05D005612 ORTHO05D007014 1.9e-86 322.8 202 75.7
Sed0014004 Sechium edule HOM05D005612 ORTHO05D007014 2.5e-86 322.4 202 74.8
vmacro21020 Vaccinium macrocarpon HOM05D005612 ORTHO05D007014 5.5e-86 321.2 203 75.9
Lj3g0004128 Lotus japonicus HOM05D005612 ORTHO05D007014 7.2e-86 320.9 202 75.7
Nitab4.5_0005450g0010 Nicotiana tabacum HOM05D005612 ORTHO05D007014 7.2e-86 320.9 190 80.0
Sopen08g002560 Solanum pennellii HOM05D005612 ORTHO05D007014 7.2e-86 320.9 203 75.9
Lalb_Chr01g0021461 Lupinus albus HOM05D005612 ORTHO05D007014 1.2e-85 320.1 201 75.6
CAN.G530.1 Capsicum annuum HOM05D005612 ORTHO05D007014 2.7e-85 318.9 188 80.3
CANSAT01G1400 Cannabis sativa HOM05D005612 ORTHO05D007014 3.6e-85 318.5 202 73.8
CiPaw.01G263000 Carya illinoinensis HOM05D005612 ORTHO05D007014 3.6e-85 318.5 201 75.1
DCAR_008555 Daucus carota HOM05D005612 ORTHO05D007014 3.6e-85 318.5 203 75.9
VMungo1127G0102 Vigna mungo HOM05D005612 ORTHO05D007014 3.6e-85 318.5 202 73.3
arahy.Tifrunner.gnm1.ann1.39QM8U Arachis hypogaea HOM05D005612 ORTHO05D007014 1.0e-84 317.0 195 75.4
Actinidia12252 Actinidia chinensis HOM05D005612 ORTHO05D007014 1.8e-84 316.2 199 74.9
Aqoxy3G02061 Aquilegia oxysepala HOM05D005612 ORTHO05D007014 6.7e-84 314.3 188 78.7
arahy.Tifrunner.gnm1.ann1.Q1YE57 Arachis hypogaea HOM05D005612 ORTHO05D007014 6.7e-84 314.3 195 74.9
Aqoxy1G04104 Aquilegia oxysepala HOM05D005612 ORTHO05D007014 8.7e-84 313.9 188 78.7
Manes.01G266600 Manihot esculenta HOM05D005612 ORTHO05D007014 1.5e-83 313.2 202 74.3
PGR042G0232 Punica granatum HOM05D005612 ORTHO05D007014 1.5e-83 313.2 196 74.0
Hund07502 Selenicereus undatus HOM05D005612 ORTHO05D007014 1.5e-83 313.2 226 69.5
Lsat_1_v5_gn_7_9741 Lactuca sativa HOM05D005612 ORTHO05D007014 3.3e-83 312.0 213 72.3
Cc02_g24020 Coffea canephora HOM05D005612 ORTHO05D007014 4.3e-83 311.6 202 74.8
Migut.B01623 Erythranthe guttata HOM05D005612 ORTHO05D007014 5.7e-83 311.2 201 71.1
Ah.04g161950 Amaranthus hybridus HOM05D004275 ORTHO05D005720 7.4e-83 310.8 192 76.0
Eucgr.E01443 Eucalyptus grandis HOM05D005612 ORTHO05D007014 1.3e-82 310.1 199 72.9
MSTRG.17178 Avicennia marina HOM05D005612 ORTHO05D007014 4.8e-82 308.1 202 70.8
Lj7C530T5 Lonicera japonica HOM05D005612 ORTHO05D007014 2.4e-81 305.8 207 72.0
SalBow5G3218 Salvia bowleyana HOM05D005612 ORTHO05D007014 4.1e-81 305.1 201 71.1
Manes.05G046700 Manihot esculenta HOM05D005612 ORTHO05D007014 2.0e-80 302.8 184 77.7
Lsat_1_v5_gn_8_86120 Lactuca sativa HOM05D005612 ORTHO05D007014 6.5e-79 297.7 206 70.4
HanXRQChr04g0122751 Helianthus annuus HOM05D005612 ORTHO05D007014 1.1e-78 297.0 204 72.1
ECA236G2759 Erigeron canadensis HOM05D005612 ORTHO05D007014 2.5e-78 295.8 204 71.1
unitig_749.g14376 Utricularia gibba HOM05D005612 ORTHO05D007014 3.2e-78 295.4 203 69.0
Duzib138G0844 Durio zibethinus HOM05D005612 ORTHO05D007014 1.6e-77 293.1 163 82.2
Ca_19396_v3 Cicer arietinum L. HOM05D005612 ORTHO05D007014 2.7e-77 292.4 187 74.3
Oeu055499.1 Olea europaea HOM05D005612 ORTHO05D007014 1.5e-75 286.6 189 73.5
Zm00001eb195050 Zea mays HOM05D005612 ORTHO05D007014 2.4e-73 279.3 200 68.0
MBI14_g08144_MAGBIO Magnolia biondii HOM05D005612 ORTHO05D007014 5.9e-72 274.6 199 67.8
unitig_76.g29085 Utricularia gibba HOM05D005612 ORTHO05D007014 5.2e-68 261.5 164 72.6
Sabra14G0048200 Salix brachista HOM05D005612 ORTHO05D007014 2.0e-67 259.6 176 71.6
PGSC0003DMG400026305 Solanum tuberosum HOM05D005612 ORTHO05D007014 9.7e-67 257.3 158 76.6
Sc16g0011470 Simmondsia chinensis HOM05D005612 ORTHO05D007014 2.2e-66 256.1 160 77.5
Zm00001eb249030 Zea mays HOM05D005612 ORTHO05D007014 2.6e-64 249.2 176 68.2
CDE07G1659 Ceratophyllum demersum HOM05D005612 ORTHO05D007014 1.5e-62 243.4 159 69.8
MELO3C006197.2 Cucumis melo HOM05D005612 ORTHO05D007014 6.1e-61 238.0 149 75.8
FAN19G0199 Fragaria x ananassa HOM05D005612 ORTHO05D007014 1.3e-58 230.3 130 79.2
ATR1100G025 Amborella trichopoda HOM05D005612 ORTHO05D007014 1.7e-58 229.9 158 69.6
ATR0686G054 Amborella trichopoda HOM05D005612 ORTHO05D007014 1.4e-57 226.9 158 68.4
SMO119G0175 Selaginella moellendorffii HOM05D005612 ORTHO05D007014 1.4e-57 226.9 203 50.7
Zm00001eb012290 Zea mays HOM05D005612 ORTHO05D007014 1.0e-55 220.7 157 66.2
Pp3c17_6010 Physcomitrium patens HOM05D005612 ORTHO05D007014 7.5e-51 204.5 195 51.3
MSTRG.28297 Avicennia marina HOM05D005612 ORTHO05D007014 1.3e-47 193.7 113 75.2
CiPaw.09G176500 Carya illinoinensis HOM05D005612 ORTHO05D007014 2.3e-44 183.0 186 47.8
AagrBONN_evm.TU.Sc2ySwM_117.669 Anthoceros agrestis HOM05D005612 ORTHO05D007014 1.2e-43 180.6 161 50.9
Medtr8g102040 Medicago truncatula HOM05D005612 ORTHO05D007014 1.0e-39 167.5 131 61.1
SGA_v2.0_scaffold153G37000 Striga asiatica HOM05D005612 ORTHO05D007014 6.0e-32 141.7 104 67.3
Zm00001eb270960 Zea mays HOM05D005612 ORTHO05D002685 9.5e-30 134.4 84 75.0
Rhsim01G0149000 Rhododendron simsii HOM05D005612 ORTHO05D007014 7.5e-27 124.8 62 83.9
Oeu011925.1 Olea europaea HOM05D005612 ORTHO05D007014 3.2e-25 119.4 78 70.5
TAR626G0370 Trochodendron aralioides HOM05D005612 ORTHO05D007014 3.2e-25 119.4 72 75.0
Glyma.20G076400 Glycine max HOM05D005612 ORTHO05D007014 1.7e-23 113.6 74 67.6
Medtr8g102045 Medicago truncatula HOM05D005612 ORTHO05D007014 1.2e-21 107.5 89 64.0
Dinv32369 Davidia involucrata HOM05D005612 ORTHO05D007014 2.8e-21 106.3 72 72.2
Zm00001eb385140 Zea mays HOM05D005612 ORTHO05D007014 6.8e-20 101.7 71 66.2
Zm00001eb084960 Zea mays HOM05D005612 ORTHO05D007014 8.9e-20 101.3 71 66.2
Haze_18350 Corylus avellana HOM05D005612 ORTHO05D007014 4.4e-19 99.0 72 68.1
MD15G1255900 Malus domestica HOM05D001392 ORTHO05D036605 8.6e-15 84.7 45 82.2
Lalb_Chr08g0243441 Lupinus albus HOM05D005612 ORTHO05D007014 4.0e-12 75.9 45 73.3
Dinv39084 Davidia involucrata HOM05D005612 ORTHO05D007014 2.7e-08 63.2 105 33.3
Lalb_Chr16g0388221 Lupinus albus HOM05D005612 ORTHO05D007014 3.9e-07 59.3 35 68.6


User provided reference genes

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