Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR139580 Cardamine hirsuta HOM05D006965 ORTHO05D008652 1.1e-118 429.9 197 100.0
AL4G43420 Arabidopsis lyrata HOM05D006965 ORTHO05D008652 1.1e-102 376.7 198 86.4
BcaB02g08813 Brassica carinata HOM05D006965 ORTHO05D008652 1.7e-100 369.4 196 83.7
Thhalv10001527m.g Eutrema salsugineum HOM05D006965 ORTHO05D008652 1.5e-99 366.3 189 86.2
Sp4g26490 Schrenkiella parvula HOM05D006965 ORTHO05D008652 2.5e-99 365.5 197 83.8
Carub.0004s2700 Capsella rubella HOM05D006965 ORTHO05D008652 7.3e-99 364.0 191 84.8
BraA05t19431Z Brassica rapa HOM05D006965 ORTHO05D008652 2.1e-98 362.5 194 83.5
BcaC02g12316 Brassica carinata HOM05D006965 ORTHO05D008652 4.7e-98 361.3 194 82.0
C04p05300 Brassica napus HOM05D006965 ORTHO05D008652 4.7e-98 361.3 194 82.0
A05p04570 Brassica napus HOM05D006965 ORTHO05D008652 1.0e-97 360.1 194 83.0
AT2G44420 Arabidopsis thaliana HOM05D006965 ORTHO05D008652 6.8e-97 357.5 228 74.6
BolC4t22170H Brassica oleracea HOM05D006965 ORTHO05D008652 5.4e-94 347.8 218 72.9
Aa31LG1G25970 Aethionema arabicum HOM05D006965 ORTHO05D008652 9.8e-88 327.0 189 78.8
THA.LOC104827577 Tarenaya hassleriana HOM05D006965 ORTHO05D008652 3.7e-87 325.1 197 72.6
Thecc.01G416200 Theobroma cacao HOM05D006965 ORTHO05D008652 1.4e-73 280.0 186 67.7
Gohir.A08G026760 Gossypium hirsutum HOM05D006965 ORTHO05D008652 2.6e-72 275.8 185 67.0
Gorai.004G035500 Gossypium raimondii HOM05D006965 ORTHO05D008652 3.4e-72 275.4 185 67.0
Gohir.D08G037500 Gossypium hirsutum HOM05D006965 ORTHO05D008652 1.7e-71 273.1 185 66.5
Actinidia32338 Actinidia chinensis HOM05D006965 ORTHO05D008652 2.2e-71 272.7 185 64.3
Potri.009G023200 Populus trichocarpa HOM05D006965 ORTHO05D008652 2.2e-71 272.7 187 63.6
Ciclev10031978m.g Citrus clementina HOM05D006965 ORTHO05D008652 2.9e-71 272.3 188 63.8
Duzib114G0529 Durio zibethinus HOM05D006965 ORTHO05D008652 2.4e-70 269.2 185 66.5
CiPaw.13G000900 Carya illinoinensis HOM05D006965 ORTHO05D008652 4.2e-70 268.5 187 65.2
Manes.10G151000 Manihot esculenta HOM05D006965 ORTHO05D008652 4.2e-70 268.5 188 60.6
Sabra09G0014600 Salix brachista HOM05D006965 ORTHO05D008652 2.7e-69 265.8 187 62.0
TWI73G0408 Tripterygium wilfordii HOM05D006965 ORTHO05D008652 7.8e-69 264.2 187 63.6
Atru.chr11.2694 Acer truncatum HOM05D006965 ORTHO05D008652 1.7e-68 263.1 184 61.4
Prupe.2G004200 Prunus persica HOM05D006965 ORTHO05D008652 3.0e-68 262.3 185 62.7
Nn2g15664 Nelumbo nucifera HOM05D006965 ORTHO05D008652 9.6e-67 257.3 188 61.2
CANSAT78G1981 Cannabis sativa HOM05D006965 ORTHO05D008652 2.1e-66 256.1 184 59.8
QL04p000072 Quercus lobata HOM05D006965 ORTHO05D008652 3.6e-66 255.4 184 60.9
QL04p003153 Quercus lobata HOM05D006965 ORTHO05D008652 3.6e-66 255.4 184 60.9
TPR.G11733 Trifolium pratense HOM05D006965 ORTHO05D008652 1.1e-65 253.8 197 58.9
CSS0026631 Camellia sinensis var. sinensis HOM05D006965 ORTHO05D008652 1.4e-65 253.4 184 62.0
TAR633G1267 Trochodendron aralioides HOM05D006965 ORTHO05D008652 1.4e-65 253.4 189 62.4
MD07G1002700 Malus domestica HOM05D006965 ORTHO05D008652 2.4e-65 252.7 183 60.7
QL04p003146 Quercus lobata HOM05D006965 ORTHO05D008652 3.1e-65 252.3 184 60.9
Cfa004805 Carpinus fangiana HOM05D006965 ORTHO05D008652 5.3e-65 251.5 187 61.0
Haze_10398 Corylus avellana HOM05D006965 ORTHO05D008652 6.9e-65 251.1 187 61.5
FvH4_7g00170 Fragaria vesca HOM05D006965 ORTHO05D008652 9.0e-65 250.8 185 61.6
FAN10G4273 Fragaria x ananassa HOM05D006965 ORTHO05D008652 1.2e-64 250.4 185 61.1
Rhsim07G0050600 Rhododendron simsii HOM05D006965 ORTHO05D008652 1.2e-64 250.4 185 57.3
Haze_10419 Corylus avellana HOM05D006965 ORTHO05D008652 1.5e-64 250.0 187 60.4
Haze_10424 Corylus avellana HOM05D006965 ORTHO05D008652 1.5e-64 250.0 187 60.4
MD02G1318500 Malus domestica HOM05D006965 ORTHO05D008652 1.5e-64 250.0 183 61.2
PGSC0003DMG400006312 Solanum tuberosum HOM05D006965 ORTHO05D008652 4.4e-64 248.4 185 57.3
GSVIVG01001368001 Vitis vinifera HOM05D006965 ORTHO05D008652 5.8e-64 248.1 186 59.7
FAN01G2144 Fragaria x ananassa HOM05D006965 ORTHO05D008652 7.6e-64 247.7 185 61.1
Eucgr.G02572 Eucalyptus grandis HOM05D006965 ORTHO05D008652 9.9e-64 247.3 197 55.3
Nitab4.5_0000892g0120 Nicotiana tabacum HOM05D006965 ORTHO05D008652 9.9e-64 247.3 185 56.8
Lalb_Chr25g0283521 Lupinus albus HOM05D006965 ORTHO05D008652 1.3e-63 246.9 184 58.2
vmacro13617 Vaccinium macrocarpon HOM05D006965 ORTHO05D008652 1.3e-63 246.9 183 57.9
Lj3g0017203 Lotus japonicus HOM05D006965 ORTHO05D008652 1.7e-63 246.5 184 57.6
Nitab4.5_0004592g0020 Nicotiana tabacum HOM05D006965 ORTHO05D008652 2.2e-63 246.1 185 55.7
RcHm_v2.0_Chr1g0313421 Rosa chinensis HOM05D006965 ORTHO05D008652 2.2e-63 246.1 185 60.5
MBI04_g33895_MAGBIO Magnolia biondii HOM05D006965 ORTHO05D008652 3.8e-63 245.4 193 56.5
PSO339G5860 Papaver somniferum HOM05D006965 ORTHO05D008652 3.8e-63 245.4 181 58.0
Cc02_g27080 Coffea canephora HOM05D006965 ORTHO05D008652 6.4e-63 244.6 182 58.2
Sopen01g033500 Solanum pennellii HOM05D006965 ORTHO05D008652 1.4e-62 243.4 183 57.4
CsaV3_3G032450 Cucumis sativus L. HOM05D006965 ORTHO05D008652 2.4e-62 242.7 189 56.6
Medtr2g060820 Medicago truncatula HOM05D006965 ORTHO05D008652 2.4e-62 242.7 181 59.1
MSTRG.17063 Avicennia marina HOM05D006965 ORTHO05D008652 3.2e-62 242.3 192 58.3
Psat1g128200 Pisum sativum HOM05D006965 ORTHO05D008652 5.4e-62 241.5 184 58.2
AUR62012162 Chenopodium quinoa HOM05D006965 ORTHO05D008652 9.3e-62 240.7 187 56.1
ClCG10G012640 Citrullus lanatus HOM05D006965 ORTHO05D008652 9.3e-62 240.7 189 56.1
Sc12g0002350 Simmondsia chinensis HOM05D006965 ORTHO05D008652 9.3e-62 240.7 183 55.7
CAN.G261.10 Capsicum annuum HOM05D006965 ORTHO05D008652 1.2e-61 240.4 185 55.7
Solyc01g073930.3 Solanum lycopersicum HOM05D006965 ORTHO05D008652 1.6e-61 240.0 183 56.3
Ca_02931_v3 Cicer arietinum L. HOM05D006965 ORTHO05D008652 2.1e-61 239.6 184 57.6
MELO3C023943.2 Cucumis melo HOM05D006965 ORTHO05D008652 2.1e-61 239.6 189 56.1
FAN01G0465 Fragaria x ananassa HOM05D006965 ORTHO05D008652 2.1e-61 239.6 197 57.4
PSO384G4145 Papaver somniferum HOM05D006965 ORTHO05D008652 4.6e-61 238.4 181 56.4
Phvul.005G039600 Phaseolus vulgaris HOM05D006965 ORTHO05D008652 7.8e-61 237.7 197 53.8
Hund16040 Selenicereus undatus HOM05D006965 ORTHO05D008652 1.0e-60 237.3 195 54.4
SalBow5G3371 Salvia bowleyana HOM05D006965 ORTHO05D008652 2.3e-60 236.1 183 56.3
Aqoxy1G00028 Aquilegia oxysepala HOM05D006965 ORTHO05D008652 3.9e-60 235.3 187 55.1
Migut.B01364 Erythranthe guttata HOM05D006965 ORTHO05D008652 1.5e-59 233.4 183 57.9
SGA_v2.0_scaffold5G03114 Striga asiatica HOM05D006965 ORTHO05D008652 5.6e-59 231.5 183 57.9
AUR62022798 Chenopodium quinoa HOM05D006965 ORTHO05D008652 7.3e-59 231.1 187 53.5
Os06g0618150 Oryza sativa ssp. japonica HOM05D006965 ORTHO05D008652 1.3e-58 230.3 190 53.2
HPP92_002651 Vanilla planifolia HOM05D006965 ORTHO05D008652 2.8e-58 229.2 183 55.2
VMungo1080G1640 Vigna mungo HOM05D006965 ORTHO05D008652 1.1e-57 227.3 181 55.8
Glyma.08G149400 Glycine max HOM05D006965 ORTHO05D008652 2.4e-57 226.1 185 55.1
Sed0016917 Sechium edule HOM05D006965 ORTHO05D008652 3.1e-57 225.7 188 53.2
Zm00001eb275720 Zea mays HOM05D006965 ORTHO05D008652 4.0e-57 225.3 190 51.1
FAN06G0111 Fragaria x ananassa HOM05D006965 ORTHO05D008652 2.0e-56 223.0 168 60.7
ECA248G1794 Erigeron canadensis HOM05D006965 ORTHO05D008652 4.5e-56 221.9 191 50.8
unitig_26.g9594 Utricularia gibba HOM05D001227 ORTHO05D001082 1.4e-54 216.9 181 54.7
TAR362G1148 Trochodendron aralioides HOM05D006965 ORTHO05D008652 2.4e-54 216.1 154 66.9
Ah.16g102760 Amaranthus hybridus HOM05D006965 ORTHO05D008652 7.1e-54 214.5 182 52.7
PGR004G0492 Punica granatum HOM05D006965 ORTHO05D008652 5.1e-52 208.4 160 61.2
CDE05G0249 Ceratophyllum demersum HOM05D006965 ORTHO05D008652 3.7e-50 202.2 187 50.8
HanXRQChr01g0018681 Helianthus annuus HOM05D006965 ORTHO05D008652 5.3e-49 198.4 181 48.6
ATR0605G047 Amborella trichopoda HOM05D006965 ORTHO05D008652 7.6e-48 194.5 194 46.4
Dinv43490 Davidia involucrata HOM05D006965 ORTHO05D008652 8.7e-44 181.0 125 68.0
COL.COLO4_23913 Corchorus olitorius HOM05D006280 ORTHO05D008652 1.6e-42 176.8 110 70.9
EL10Ac2g04673 Beta vulgaris HOM05D006965 ORTHO05D008652 4.8e-42 175.3 158 51.9
Eucgr.L03457 Eucalyptus grandis HOM05D006965 ORTHO05D008652 1.8e-41 173.3 131 55.0
Hma1.2p1_2998F.1_g331493 Hydrangea macrophylla HOM05D006965 ORTHO05D008652 3.1e-41 172.6 114 68.4
Hma1.2p1_2998F.1_g331496 Hydrangea macrophylla HOM05D006965 ORTHO05D008652 3.1e-41 172.6 114 68.4
SEGI_12556 Sequoiadendron giganteum HOM05D006965 ORTHO05D008652 2.0e-40 169.9 125 60.8
FAN03G0167 Fragaria x ananassa HOM05D006965 ORTHO05D008652 1.0e-36 157.5 111 65.8
Peaxi162Scf00878g00321 Petunia axillaris HOM05D006965 ORTHO05D008652 1.8e-36 156.8 115 58.3
Mapoly0087s0073 Marchantia polymorpha HOM05D006965 ORTHO05D008652 5.1e-36 155.2 190 42.1
Cfa022003 Carpinus fangiana HOM05D006965 ORTHO05D008652 4.3e-35 152.1 129 55.0
Lsat_1_v5_gn_1_110081 Lactuca sativa HOM05D006965 ORTHO05D008652 7.4e-35 151.4 143 49.7
DCAR_029603 Daucus carota HOM05D006965 ORTHO05D008652 5.5e-30 135.2 100 66.0
Haze_10414 Corylus avellana HOM05D006965 ORTHO05D008652 3.0e-28 129.4 100 62.0
Cpa.g.sc189.20 Carica papaya HOM05D006965 ORTHO05D008652 3.0e-20 102.8 73 58.9
SMO132G0001 Selaginella moellendorffii HOM05D006965 ORTHO05D008652 6.3e-18 95.1 170 33.5
Oeu009369.1 Olea europaea HOM05D006965 ORTHO05D008652 5.5e-14 82.0 93 41.9
TPR.G14363 Trifolium pratense HOM05D006965 ORTHO05D008652 1.2e-13 80.9 70 60.0
arahy.Tifrunner.gnm1.ann1.Z1UMC7 Arachis hypogaea HOM05D006965 ORTHO05D008652 1.7e-10 70.5 51 54.9
arahy.Tifrunner.gnm1.ann1.ZJD8NP Arachis hypogaea HOM05D006965 ORTHO05D008652 1.8e-09 67.0 51 51.0


User provided reference genes

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