Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR139170 Cardamine hirsuta HOM05D010890 ORTHO05D012999 3.9e-114 414.8 212 100.0
AL4G42880 Arabidopsis lyrata HOM05D010890 ORTHO05D012999 4.7e-96 354.8 212 85.4
Carub.0004s2656 Capsella rubella HOM05D010890 ORTHO05D012999 8.1e-88 327.4 212 80.2
AT2G44000 Arabidopsis thaliana HOM05D010890 ORTHO05D012999 1.8e-87 326.2 212 79.2
Sp4g26090 Schrenkiella parvula HOM05D010890 ORTHO05D012999 3.9e-82 308.5 209 77.0
BcaB01g03338 Brassica carinata HOM05D010890 ORTHO05D012999 1.8e-79 299.7 213 72.3
A03p24630 Brassica napus HOM05D010890 ORTHO05D012999 4.5e-78 295.0 212 71.2
Thhalv10001637m.g Eutrema salsugineum HOM05D010890 ORTHO05D012999 7.6e-78 294.3 213 73.7
BraA03t11668Z Brassica rapa HOM05D010890 ORTHO05D012999 9.9e-78 293.9 212 71.2
BcaC01g05193 Brassica carinata HOM05D010890 ORTHO05D012999 2.2e-77 292.7 212 70.8
C03p29360 Brassica napus HOM05D010890 ORTHO05D012999 2.2e-77 292.7 212 70.8
BolC3t15283H Brassica oleracea HOM05D010890 ORTHO05D012999 2.2e-77 292.7 212 70.8
BcaB01g03346 Brassica carinata HOM05D010890 ORTHO05D012999 1.3e-69 266.9 188 73.4
BolC4t22122H Brassica oleracea HOM05D010890 ORTHO05D012999 2.5e-68 262.7 201 67.7
C04p04920 Brassica napus HOM05D010890 ORTHO05D012999 3.2e-68 262.3 201 67.7
BcaC02g12346 Brassica carinata HOM05D010890 ORTHO05D012999 5.5e-68 261.5 201 67.7
A05p04150 Brassica napus HOM05D010890 ORTHO05D012999 6.7e-66 254.6 201 65.7
BraA05t19401Z Brassica rapa HOM05D010890 ORTHO05D012999 6.7e-66 254.6 201 65.7
BcaB01g04784 Brassica carinata HOM05D010890 ORTHO05D012999 1.9e-28 130.2 88 73.9
BcaB07g31431 Brassica carinata HOM05D000172 ORTHO05D000273 3.0e-18 96.3 208 33.7
Dinv37581 Davidia involucrata HOM05D000172 ORTHO05D000273 3.0e-18 96.3 203 34.5
AL2G10990 Arabidopsis lyrata HOM05D000172 ORTHO05D000273 6.8e-18 95.1 212 34.9
BraA09t37147Z Brassica rapa HOM05D000172 ORTHO05D000273 8.8e-18 94.7 212 34.9
A09p15020 Brassica napus HOM05D000172 ORTHO05D000273 1.5e-17 94.0 212 34.9
THA.LOC104817758 Tarenaya hassleriana HOM05D000172 ORTHO05D000273 1.5e-17 94.0 194 36.6
Carub.0002s0073 Capsella rubella HOM05D000172 ORTHO05D000273 2.6e-17 93.2 209 34.0
CARHR046870 Cardamine hirsuta HOM05D000172 ORTHO05D000273 5.7e-17 92.0 209 33.0
Haze_08742 Corylus avellana HOM05D000172 ORTHO05D000273 7.5e-17 91.7 220 30.9
Thhalv10023687m.g Eutrema salsugineum HOM05D000172 ORTHO05D000273 7.5e-17 91.7 215 34.4
AT1G64065 Arabidopsis thaliana HOM05D000172 ORTHO05D000273 1.7e-16 90.5 210 34.3
Cfa012256 Carpinus fangiana HOM05D000172 ORTHO05D000273 1.7e-16 90.5 218 31.2
Sp2g00640 Schrenkiella parvula HOM05D000172 ORTHO05D000273 1.7e-16 90.5 212 33.0
CiPaw.11G128300 Carya illinoinensis HOM05D000172 ORTHO05D000273 3.7e-16 89.4 205 30.2
CANSAT21G2425 Cannabis sativa HOM05D000172 ORTHO05D000273 1.4e-15 87.4 198 30.8
THA.LOC104809652 Tarenaya hassleriana HOM05D000172 ORTHO05D000273 2.4e-15 86.7 206 31.1
Sabra01G0073500 Salix brachista HOM05D000172 ORTHO05D000273 4.1e-15 85.9 201 30.8
Gorai.003G084900 Gossypium raimondii HOM05D000172 ORTHO05D000273 7.0e-15 85.1 193 33.7
DCAR_008348 Daucus carota HOM05D000172 ORTHO05D000273 9.2e-15 84.7 194 32.5
Gohir.A02G104600 Gossypium hirsutum HOM05D000172 ORTHO05D000273 1.2e-14 84.3 193 33.2
Potri.001G098200 Populus trichocarpa HOM05D000172 ORTHO05D000273 2.0e-14 83.6 174 33.9
Gohir.D03G079200 Gossypium hirsutum HOM05D000172 ORTHO05D000273 3.5e-14 82.8 193 32.6
Aa31LG2G1140 Aethionema arabicum HOM05D000172 ORTHO05D000273 1.0e-13 81.3 208 30.3
CiPaw.12G087900 Carya illinoinensis HOM05D000172 ORTHO05D000273 1.7e-13 80.5 201 33.3
Gohir.D03G079100 Gossypium hirsutum HOM05D000172 ORTHO05D000273 1.7e-13 80.5 196 31.6
Gorai.003G085000 Gossypium raimondii HOM05D000172 ORTHO05D000273 1.7e-13 80.5 196 31.6
Nn7g37305 Nelumbo nucifera HOM05D000172 ORTHO05D000273 3.8e-13 79.3 210 31.0
COL.COLO4_08342 Corchorus olitorius HOM05D000172 ORTHO05D000273 6.6e-13 78.6 195 30.8
Duzib205G1592 Durio zibethinus HOM05D000172 ORTHO05D000273 6.6e-13 78.6 194 30.9
Ciclev10023929m.g Citrus clementina HOM05D000172 ORTHO05D000273 1.5e-12 77.4 180 33.3
Hma1.2p1_0377F.1_g139630 Hydrangea macrophylla HOM05D000172 ORTHO05D000273 1.5e-12 77.4 188 31.9
LjContig00312_ERROPOS870357g0000103 Lotus japonicus HOM05D000172 ORTHO05D000273 1.9e-12 77.0 193 31.6
BcaC04g22528 Brassica carinata HOM05D000172 ORTHO05D014530 2.5e-12 76.6 203 29.6
C09p18190 Brassica napus HOM05D013065 ORTHO05D014530 2.5e-12 76.6 203 29.6
Prupe.5G109800 Prunus persica HOM05D000172 ORTHO05D000273 2.5e-12 76.6 207 29.0
BolC9t54715H Brassica oleracea HOM05D013065 ORTHO05D014530 3.3e-12 76.3 203 29.6
Atru.chr9.2099 Acer truncatum HOM05D000172 ORTHO05D000273 5.6e-12 75.5 191 33.0
Glyma.01G222800 Glycine max HOM05D000172 ORTHO05D000273 2.8e-11 73.2 192 29.2
Thecc.03G288100 Theobroma cacao HOM05D000172 ORTHO05D000273 2.8e-11 73.2 190 28.4
RcHm_v2.0_Chr7g0196211 Rosa chinensis HOM05D000172 ORTHO05D000273 4.7e-11 72.4 208 29.8
Gohir.A12G233000 Gossypium hirsutum HOM05D000172 ORTHO05D000273 6.1e-11 72.0 194 29.4
MD06G1093300 Malus domestica HOM05D000172 ORTHO05D000273 6.1e-11 72.0 190 28.9
CiPaw.11G128800 Carya illinoinensis HOM05D000172 ORTHO05D000273 8.0e-11 71.6 191 31.4
MD14G1114000 Malus domestica HOM05D000172 ORTHO05D000273 8.0e-11 71.6 190 28.9
CiPaw.11G128400 Carya illinoinensis HOM05D000172 ORTHO05D000273 1.0e-10 71.2 190 30.0
Peaxi162Scf00074g01629 Petunia axillaris HOM05D000172 ORTHO05D000273 1.0e-10 71.2 197 33.0
VMungo1215G2013 Vigna mungo HOM05D000172 ORTHO05D000273 1.0e-10 71.2 191 31.4
CSS0040824 Camellia sinensis var. sinensis HOM05D000172 ORTHO05D000273 1.8e-10 70.5 193 26.9
MD14G1114800 Malus domestica HOM05D000172 ORTHO05D000273 1.8e-10 70.5 211 28.0
MD06G1094600 Malus domestica HOM05D000172 ORTHO05D000273 2.3e-10 70.1 210 28.1
FvH4_5g03450 Fragaria vesca HOM05D000172 ORTHO05D000273 4.0e-10 69.3 207 28.5
FAN04G1216 Fragaria x ananassa HOM05D000172 ORTHO05D000273 4.0e-10 69.3 207 28.5
TAR629G0364 Trochodendron aralioides HOM05D000172 ORTHO05D000273 5.2e-10 68.9 214 27.1
Duzib084G0188 Durio zibethinus HOM05D000172 ORTHO05D000273 6.8e-10 68.6 191 30.4
PGR031G0469 Punica granatum HOM05D000172 ORTHO05D000273 6.8e-10 68.6 213 28.6
arahy.Tifrunner.gnm1.ann1.GH786V Arachis hypogaea HOM05D000172 ORTHO05D000273 1.2e-09 67.8 188 27.7
Lsat_1_v5_gn_6_84881 Lactuca sativa HOM05D000172 ORTHO05D000273 2.0e-09 67.0 194 26.3
Nn1g01711 Nelumbo nucifera HOM05D000172 ORTHO05D000273 2.0e-09 67.0 182 30.8
MSTRG.25638 Avicennia marina HOM05D000172 ORTHO05D000273 3.4e-09 66.2 188 29.8
FAN13G0657 Fragaria x ananassa HOM05D000172 ORTHO05D000273 3.4e-09 66.2 215 27.9
Gohir.D12G234300 Gossypium hirsutum HOM05D000172 ORTHO05D000273 4.4e-09 65.9 193 27.5
Glyma.11G020600 Glycine max HOM05D000172 ORTHO05D000273 5.7e-09 65.5 189 28.6
RcHm_v2.0_Chr7g0196461 Rosa chinensis HOM05D000172 ORTHO05D000273 5.7e-09 65.5 176 27.3
Hma1.2p1_0327F.1_g126550 Hydrangea macrophylla HOM05D000172 ORTHO05D000273 7.5e-09 65.1 156 27.6
MD07G1281400 Malus domestica HOM05D000172 ORTHO05D000273 7.5e-09 65.1 186 30.6
COL.COLO4_08344 Corchorus olitorius HOM05D000172 ORTHO05D000273 9.8e-09 64.7 183 26.2
Gohir.A02G104700 Gossypium hirsutum HOM05D000172 ORTHO05D000273 9.8e-09 64.7 106 36.8
QL02p033051 Quercus lobata HOM05D000172 ORTHO05D000273 9.8e-09 64.7 175 25.7
FAN08G2343 Fragaria x ananassa HOM05D000172 ORTHO05D000273 1.3e-08 64.3 215 27.0
FAN18G2802 Fragaria x ananassa HOM05D000172 ORTHO05D000781 1.3e-08 64.3 203 28.1
Nitab4.5_0017125g0010 Nicotiana tabacum HOM05D000172 ORTHO05D000273 1.7e-08 63.9 186 29.0
Prupe.2G303200 Prunus persica HOM05D000172 ORTHO05D000273 1.7e-08 63.9 185 30.8
MD07G1281500 Malus domestica HOM05D000172 ORTHO05D000273 2.9e-08 63.2 186 24.7
SalBow4G0436 Salvia bowleyana HOM05D000172 ORTHO05D000273 2.9e-08 63.2 136 31.6
Duzib068G0755 Durio zibethinus HOM05D000172 ORTHO05D000273 4.9e-08 62.4 147 28.6
FAN13G2223 Fragaria x ananassa HOM05D000172 ORTHO05D000781 4.9e-08 62.4 211 27.5
Rhsim02G0236400 Rhododendron simsii HOM05D000172 ORTHO05D000273 4.9e-08 62.4 210 27.6
RcHm_v2.0_Chr7g0196251 Rosa chinensis HOM05D000172 ORTHO05D000273 8.3e-08 61.6 134 26.9
Thecc.03G287700 Theobroma cacao HOM05D000172 ORTHO05D000273 8.3e-08 61.6 123 31.7
Oeu049086.1 Olea europaea HOM05D000172 ORTHO05D000273 1.1e-07 61.2 179 28.5
RcHm_v2.0_Chr7g0196241 Rosa chinensis HOM05D000172 ORTHO05D000273 1.1e-07 61.2 189 28.6
CiPaw.11G128700 Carya illinoinensis HOM05D000172 ORTHO05D000273 1.4e-07 60.8 211 24.6
PGR042G1551 Punica granatum HOM05D000172 ORTHO05D000273 1.4e-07 60.8 184 25.0
PGSC0003DMG400012355 Solanum tuberosum HOM05D000172 ORTHO05D000273 1.4e-07 60.8 190 29.5
MD06G1091500 Malus domestica HOM05D000172 ORTHO05D000273 1.8e-07 60.5 139 28.8
MD15G1164000 Malus domestica HOM05D000172 ORTHO05D000273 2.4e-07 60.1 205 24.4
Prupe.5G109700 Prunus persica HOM05D000172 ORTHO05D000273 2.4e-07 60.1 205 27.3
Duzib068G1415 Durio zibethinus HOM05D000172 ORTHO05D000273 3.2e-07 59.7 147 27.9
RcHm_v2.0_Chr7g0222831 Rosa chinensis HOM05D000172 ORTHO05D000273 3.2e-07 59.7 141 29.1
Sed0025597 Sechium edule HOM05D000172 ORTHO05D000273 3.2e-07 59.7 179 29.6
RcHm_v2.0_Chr7g0222871 Rosa chinensis HOM05D000172 ORTHO05D000273 4.1e-07 59.3 141 28.4
TPR.G761 Trifolium pratense HOM05D000172 ORTHO05D000273 4.1e-07 59.3 195 25.6
FAN13G2463 Fragaria x ananassa HOM05D000172 ORTHO05D000273 5.4e-07 58.9 140 26.4
TAR636G3351 Trochodendron aralioides HOM05D000172 ORTHO05D000273 5.4e-07 58.9 123 30.9
CiPaw.05G260600 Carya illinoinensis HOM05D000172 ORTHO05D000273 7.0e-07 58.5 195 26.2
CiPaw.11G128600 Carya illinoinensis HOM05D000172 ORTHO05D000273 7.0e-07 58.5 182 26.9
Haze_13543 Corylus avellana HOM05D000172 ORTHO05D000273 7.0e-07 58.5 179 25.1
Cfa023368 Carpinus fangiana HOM05D000172 ORTHO05D000273 9.2e-07 58.2 179 26.3
CiPaw.13G081800 Carya illinoinensis HOM05D000172 ORTHO05D000273 9.2e-07 58.2 178 26.4
Dinv08218 Davidia involucrata HOM05D000172 ORTHO05D000273 9.2e-07 58.2 133 27.1
FAN04G0637 Fragaria x ananassa HOM05D000172 ORTHO05D000273 9.2e-07 58.2 138 26.1
FAN04G2837 Fragaria x ananassa HOM05D000172 ORTHO05D000273 9.2e-07 58.2 138 26.1
RcHm_v2.0_Chr7g0222881 Rosa chinensis HOM05D000172 ORTHO05D000273 9.2e-07 58.2 182 25.8
RcHm_v2.0_Chr7g0222891 Rosa chinensis HOM05D000172 ORTHO05D000273 9.2e-07 58.2 185 27.0
CiPaw.13G081600 Carya illinoinensis HOM05D000172 ORTHO05D000273 1.2e-06 57.8 178 25.8
ClCG01G002270 Citrullus lanatus HOM05D000172 ORTHO05D000273 1.2e-06 57.8 150 31.3
FvH4_5g03320 Fragaria vesca HOM05D000172 ORTHO05D000273 1.2e-06 57.8 140 26.4
FAN08G1252 Fragaria x ananassa HOM05D000172 ORTHO05D000273 1.2e-06 57.8 174 25.9
Gorai.008G250600 Gossypium raimondii HOM05D000172 ORTHO05D000273 1.2e-06 57.8 193 25.9
Duzib068G0958 Durio zibethinus HOM05D000172 ORTHO05D000273 1.6e-06 57.4 147 28.6
FAN04G0190 Fragaria x ananassa HOM05D000172 ORTHO05D000273 1.6e-06 57.4 174 26.4
FAN04G0954 Fragaria x ananassa HOM05D000172 ORTHO05D000273 1.6e-06 57.4 174 26.4
RcHm_v2.0_Chr7g0196371 Rosa chinensis HOM05D000172 ORTHO05D000273 2.0e-06 57.0 209 24.4
RcHm_v2.0_Chr7g0222841 Rosa chinensis HOM05D000172 ORTHO05D000273 2.0e-06 57.0 182 24.7
Actinidia34169 Actinidia chinensis HOM05D000172 ORTHO05D000273 2.7e-06 56.6 154 23.4
CDE07G1919 Ceratophyllum demersum HOM05D000172 ORTHO05D000273 2.7e-06 56.6 186 25.3
Cc10_g12220 Coffea canephora HOM05D000172 ORTHO05D000273 2.7e-06 56.6 128 28.1
FAN18G2001 Fragaria x ananassa HOM05D000172 ORTHO05D000273 2.7e-06 56.6 138 25.4
RcHm_v2.0_Chr7g0196311 Rosa chinensis HOM05D000172 ORTHO05D000273 2.7e-06 56.6 174 25.9
FAN13G1848 Fragaria x ananassa HOM05D000172 ORTHO05D000273 3.5e-06 56.2 138 25.4
RcHm_v2.0_Chr7g0196391 Rosa chinensis HOM05D000172 ORTHO05D000273 3.5e-06 56.2 205 25.4
CiPaw.13G081400 Carya illinoinensis HOM05D000172 ORTHO05D000273 4.6e-06 55.8 179 25.7
Dinv35276 Davidia involucrata HOM05D000806 ORTHO05D000273 4.6e-06 55.8 138 26.1
MD06G1093100 Malus domestica HOM05D000172 ORTHO05D000273 4.6e-06 55.8 176 26.7
Actinidia03147 Actinidia chinensis HOM05D000172 ORTHO05D000273 5.9e-06 55.5 128 26.6
Dinv35280 Davidia involucrata HOM05D000172 ORTHO05D000273 5.9e-06 55.5 204 23.5
FAN04G0369 Fragaria x ananassa HOM05D000172 ORTHO05D000273 5.9e-06 55.5 180 23.3
Nitab4.5_0000966g0070 Nicotiana tabacum HOM05D000172 ORTHO05D000273 5.9e-06 55.5 128 34.4
PGR042G1743 Punica granatum HOM05D000172 ORTHO05D000273 5.9e-06 55.5 135 26.7
MD14G1114500 Malus domestica HOM05D000172 ORTHO05D000273 7.8e-06 55.1 176 26.7
RcHm_v2.0_Chr7g0196281 Rosa chinensis HOM05D000172 ORTHO05D000273 7.8e-06 55.1 215 23.3


User provided reference genes

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