Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR138640 Cardamine hirsuta HOM05D007394 ORTHO05D009996 1.8e-53 212.2 102 100.0
BcaB02g08928 Brassica carinata HOM05D007394 ORTHO05D009996 1.5e-26 122.9 97 59.8
BraA05t19371Z Brassica rapa HOM05D007394 ORTHO05D009996 1.5e-26 122.9 97 59.8
A05p03840 Brassica napus HOM05D007394 ORTHO05D009996 2.5e-26 122.1 97 59.8
BcaC02g12381 Brassica carinata HOM05D007394 ORTHO05D009996 3.6e-25 118.2 97 57.7
A03p24290 Brassica napus HOM05D007394 ORTHO05D009996 8.0e-25 117.1 97 59.8
A05p03830 Brassica napus HOM05D007394 ORTHO05D009996 8.0e-25 117.1 96 61.5
BraA03t11637Z Brassica rapa HOM05D007394 ORTHO05D009996 8.0e-25 117.1 97 59.8
BraA03t11639Z Brassica rapa HOM05D007394 ORTHO05D009996 8.0e-25 117.1 97 59.8
C04p04590 Brassica napus HOM05D007394 ORTHO05D009996 1.0e-24 116.7 95 58.9
BcaB02g08929 Brassica carinata HOM05D007394 ORTHO05D009996 1.4e-24 116.3 98 57.1
BraA05t19373Z Brassica rapa HOM05D007394 ORTHO05D009996 1.4e-24 116.3 93 60.2
A04p32810 Brassica napus HOM05D007394 ORTHO05D009996 3.0e-24 115.2 94 59.6
BolC4t22090H Brassica oleracea HOM05D007394 ORTHO05D009996 3.0e-24 115.2 95 57.9
BraA03t11638Z Brassica rapa HOM05D007394 ORTHO05D009996 3.0e-24 115.2 94 60.6
BraA04t18743Z Brassica rapa HOM05D007394 ORTHO05D009996 3.0e-24 115.2 94 59.6
BcaC02g12378 Brassica carinata HOM05D007394 ORTHO05D009996 4.0e-24 114.8 95 57.9
CARHR138620 Cardamine hirsuta HOM05D007394 ORTHO05D009996 6.8e-24 114.0 97 54.6
A03p24300 Brassica napus HOM05D007394 ORTHO05D009996 8.9e-24 113.6 94 59.6
BolC4t28552H Brassica oleracea HOM05D007394 ORTHO05D009996 8.9e-24 113.6 94 59.6
BraA03t11640Z Brassica rapa HOM05D007394 ORTHO05D009996 8.9e-24 113.6 94 59.6
Carub.0004s2598 Capsella rubella HOM05D007394 ORTHO05D009996 8.9e-24 113.6 97 56.7
C04p70530 Brassica napus HOM05D007394 ORTHO05D009996 1.2e-23 113.2 94 58.5
Sp4g25610 Schrenkiella parvula HOM05D007394 ORTHO05D009996 2.6e-23 112.1 95 56.8
BcaC02g12382 Brassica carinata HOM05D007394 ORTHO05D009996 4.4e-23 111.3 97 56.7
C04p04550 Brassica napus HOM05D007394 ORTHO05D009996 4.4e-23 111.3 97 56.7
AL4G42320 Arabidopsis lyrata HOM05D007394 ORTHO05D009996 5.7e-23 110.9 101 58.4
C04p70500 Brassica napus HOM05D007394 ORTHO05D009996 1.3e-22 109.8 96 58.3
AL8G26520 Arabidopsis lyrata HOM05D007394 ORTHO05D009996 3.7e-22 108.2 104 48.1
AL1G53780 Arabidopsis lyrata HOM05D007394 ORTHO05D009996 6.3e-22 107.5 95 56.8
A04p32800 Brassica napus HOM05D007394 ORTHO05D009996 8.3e-22 107.1 97 51.5
BraA04t18742Z Brassica rapa HOM05D007394 ORTHO05D009996 8.3e-22 107.1 97 51.5
AT1G47540 Arabidopsis thaliana HOM05D007394 ORTHO05D009996 1.1e-21 106.7 95 55.8
AL4G42310 Arabidopsis lyrata HOM05D007394 ORTHO05D009996 1.4e-21 106.3 95 54.7
BcaB06g29320 Brassica carinata HOM05D007394 ORTHO05D009996 2.4e-21 105.5 96 56.2
A04p32790 Brassica napus HOM05D007394 ORTHO05D009996 2.4e-21 105.5 93 55.9
Sp3g24200 Schrenkiella parvula HOM05D007394 ORTHO05D009996 4.1e-21 104.8 102 47.1
BcaC02g07171 Brassica carinata HOM05D007394 ORTHO05D009996 7.0e-21 104.0 99 53.5
Thhalv10001746m.g Eutrema salsugineum HOM05D007394 ORTHO05D009996 7.0e-21 104.0 82 47.6
AT2G43510 Arabidopsis thaliana HOM05D007394 ORTHO05D009996 9.2e-21 103.6 91 50.5
BcaB02g10434 Brassica carinata HOM05D007394 ORTHO05D009996 9.2e-21 103.6 94 53.2
Sp3g24100 Schrenkiella parvula HOM05D007394 ORTHO05D009996 9.2e-21 103.6 99 50.5
AT2G43535 Arabidopsis thaliana HOM05D007394 ORTHO05D009996 1.2e-20 103.2 70 58.6
Carub.0004s2597 Capsella rubella HOM05D007394 ORTHO05D009996 1.2e-20 103.2 87 52.9
Sp4g25600 Schrenkiella parvula HOM05D007394 ORTHO05D009996 1.6e-20 102.8 87 51.7
BcaB01g03378 Brassica carinata HOM05D007394 ORTHO05D009996 2.0e-20 102.4 97 51.5
BcaB06g29322 Brassica carinata HOM05D007394 ORTHO05D009996 2.0e-20 102.4 69 59.4
BcaB06g29321 Brassica carinata HOM05D007394 ORTHO05D009996 2.7e-20 102.1 69 59.4
CARHR138610 Cardamine hirsuta HOM05D007394 ORTHO05D009996 2.7e-20 102.1 96 51.0
Thhalv10001697m.g Eutrema salsugineum HOM05D007394 ORTHO05D009996 2.7e-20 102.1 94 54.3
BcaC01g05230 Brassica carinata HOM05D007394 ORTHO05D009996 3.5e-20 101.7 95 54.7
AL4G42300 Arabidopsis lyrata HOM05D007394 ORTHO05D009996 4.5e-20 101.3 91 50.5
Carub.0004s2599 Capsella rubella HOM05D007394 ORTHO05D009996 4.5e-20 101.3 102 50.0
Carub.0004s2602 Capsella rubella HOM05D007394 ORTHO05D009996 5.9e-20 100.9 95 54.7
CARHR138630 Cardamine hirsuta HOM05D007394 ORTHO05D009996 7.8e-20 100.5 96 53.1
AT2G43520 Arabidopsis thaliana HOM05D007394 ORTHO05D009996 1.3e-19 99.8 95 51.6
BcaB02g08934 Brassica carinata HOM05D007394 ORTHO05D009996 1.7e-19 99.4 87 49.4
BcaC02g07172 Brassica carinata HOM05D007394 ORTHO05D009996 2.9e-19 98.6 68 60.3
BcaB06g29323 Brassica carinata HOM05D007394 ORTHO05D009996 3.8e-19 98.2 72 58.3
A05p03820 Brassica napus HOM05D007394 ORTHO05D009996 3.8e-19 98.2 87 48.3
AL2G24960 Arabidopsis lyrata HOM05D007394 ORTHO05D009996 6.6e-19 97.4 96 50.0
BcaC02g12386 Brassica carinata HOM05D007394 ORTHO05D009996 8.6e-19 97.1 87 47.1
C04p04520 Brassica napus HOM05D007394 ORTHO05D009996 8.6e-19 97.1 87 47.1
Carub.0002s0551 Capsella rubella HOM05D007394 ORTHO05D009996 8.6e-19 97.1 98 48.0
BcaC02g12384 Brassica carinata HOM05D007394 ORTHO05D009996 1.5e-18 96.3 87 46.0
C04p04540 Brassica napus HOM05D007394 ORTHO05D009996 1.5e-18 96.3 96 44.8
BolC4t22087H Brassica oleracea HOM05D007394 ORTHO05D009996 1.5e-18 96.3 96 44.8
BcaB02g08930 Brassica carinata HOM05D007394 ORTHO05D009996 3.3e-18 95.1 99 50.5
THA.LOC104803932 Tarenaya hassleriana HOM05D007394 ORTHO05D009996 2.1e-17 92.4 96 49.0
Aa31LG1G25280 Aethionema arabicum HOM05D007459 ORTHO05D009234 3.6e-17 91.7 91 52.7
THA.LOC104803941 Tarenaya hassleriana HOM05D007394 ORTHO05D009996 3.6e-17 91.7 86 48.8
THA.LOC109116252 Tarenaya hassleriana HOM05D007394 ORTHO05D009996 4.7e-17 91.3 84 48.8
BcaC02g07168 Brassica carinata HOM05D007459 ORTHO05D009234 6.1e-17 90.9 76 56.6
Aa31LG1G25260 Aethionema arabicum HOM05D007394 ORTHO05D009996 3.0e-16 88.6 74 55.4
THA.LOC104798701 Tarenaya hassleriana HOM05D007394 ORTHO05D009996 3.0e-16 88.6 94 50.0
Carub.0004s2604 Capsella rubella HOM05D007394 ORTHO05D009996 5.2e-16 87.8 96 45.8
BolC3t15251H Brassica oleracea HOM05D007394 ORTHO05D009996 8.9e-16 87.0 77 59.7
CARHR138650 Cardamine hirsuta HOM05D007394 ORTHO05D009996 2.6e-15 85.5 94 44.7
AT2G43530 Arabidopsis thaliana HOM05D007394 ORTHO05D009996 3.4e-15 85.1 95 44.2
Aa31LG1G24860 Aethionema arabicum HOM05D007394 ORTHO05D009996 2.2e-14 82.4 66 51.5
AT2G43550 Arabidopsis thaliana HOM05D007394 ORTHO05D015383 2.9e-14 82.0 87 41.4
Thhalv10001696m.g Eutrema salsugineum HOM05D007394 ORTHO05D015383 2.9e-14 82.0 90 41.1
AL4G42350 Arabidopsis lyrata HOM05D007394 ORTHO05D015383 3.7e-14 81.6 92 43.5
BcaB06g29326 Brassica carinata HOM05D007394 ORTHO05D015383 3.2e-13 78.6 84 41.7
Carub.0004s2603 Capsella rubella HOM05D007394 ORTHO05D015383 4.1e-13 78.2 83 42.2
CARHR138680 Cardamine hirsuta HOM05D007394 ORTHO05D015383 4.1e-13 78.2 91 44.0
Sp4g25660 Schrenkiella parvula HOM05D007394 ORTHO05D015383 7.0e-13 77.4 84 41.7
A04p32830 Brassica napus HOM05D007394 ORTHO05D015383 9.2e-13 77.0 84 40.5
BraA04t18745Z Brassica rapa HOM05D007394 ORTHO05D015383 9.2e-13 77.0 84 40.5
BcaC02g07166 Brassica carinata HOM05D007394 ORTHO05D015383 1.2e-12 76.6 86 40.7
BolC4t28555H Brassica oleracea HOM05D007394 ORTHO05D015383 1.2e-12 76.6 86 40.7
THA.LOC104805814 Tarenaya hassleriana HOM05D007394 ORTHO05D009996 1.6e-12 76.3 91 38.5
C04p70540 Brassica napus HOM05D007394 ORTHO05D015383 6.0e-12 74.3 86 40.7
THA.LOC104803915 Tarenaya hassleriana HOM05D007394 ORTHO05D009996 7.8e-12 73.9 95 41.1
Sp4g02290 Schrenkiella parvula HOM05D007394 ORTHO05D009234 1.7e-11 72.8 104 43.3
BolC4t28551H Brassica oleracea HOM05D007394 ORTHO05D033140 3.9e-11 71.6 94 45.7
A04p32770 Brassica napus HOM05D007394 ORTHO05D033140 1.5e-10 69.7 94 45.7
BraA04t18740Z Brassica rapa HOM05D007394 ORTHO05D033140 1.5e-10 69.7 94 45.7
THA.LOC104803922 Tarenaya hassleriana HOM05D007394 ORTHO05D009996 4.3e-10 68.2 89 41.6
Thhalv10001701m.g Eutrema salsugineum HOM05D007394 ORTHO05D032247 9.5e-10 67.0 91 42.9
CARHR123510 Cardamine hirsuta HOM05D014590 ORTHO05D017585 1.2e-09 66.6 98 41.8
Carub.0004s2601 Capsella rubella HOM05D007394 ORTHO05D009996 2.1e-09 65.9 73 43.8
Carub.0005s2631 Capsella rubella HOM05D014590 ORTHO05D017585 1.8e-08 62.8 95 37.9
BcaB06g29325 Brassica carinata HOM05D007394 ORTHO05D032247 2.3e-08 62.4 92 41.3
BcaC02g07167 Brassica carinata HOM05D007394 ORTHO05D032247 4.0e-08 61.6 92 41.3


User provided reference genes

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