Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR137130 Cardamine hirsuta HOM05D003648 ORTHO05D004267 2.0e-139 499.2 275 100.0
BcaB01g03435 Brassica carinata HOM05D003648 ORTHO05D004267 2.3e-90 336.3 279 75.6
A03p23540 Brassica napus HOM05D003648 ORTHO05D004267 4.3e-89 332.0 281 76.5
C03p28080 Brassica napus HOM05D003648 ORTHO05D004267 1.2e-88 330.5 283 75.6
BraA03t11571Z Brassica rapa HOM05D003648 ORTHO05D004267 3.1e-87 325.9 282 75.2
BcaC01g05312 Brassica carinata HOM05D003648 ORTHO05D004267 2.0e-86 323.2 283 74.6
Carub.0004s2437 Capsella rubella HOM05D003648 ORTHO05D004267 2.0e-86 323.2 280 73.9
AL4G40410 Arabidopsis lyrata HOM05D003648 ORTHO05D004267 7.5e-86 321.2 284 75.7
Thhalv10017052m.g Eutrema salsugineum HOM05D003648 ORTHO05D004267 5.1e-82 308.5 290 72.8
A05p02700 Brassica napus HOM05D003648 ORTHO05D004267 2.3e-79 299.7 283 73.9
BraA05t19262Z Brassica rapa HOM05D003648 ORTHO05D004267 5.2e-79 298.5 283 73.5
AT2G42040 Arabidopsis thaliana HOM05D003648 ORTHO05D004267 1.5e-78 297.0 286 69.9
BcaC02g12455 Brassica carinata HOM05D003648 ORTHO05D004267 2.2e-77 293.1 281 72.2
C04p03220 Brassica napus HOM05D003648 ORTHO05D004267 2.2e-77 293.1 281 72.2
BolC4t21960H Brassica oleracea HOM05D003648 ORTHO05D004267 2.2e-77 293.1 281 72.2
SpUn1032_0010 Schrenkiella parvula HOM05D003648 ORTHO05D004267 1.7e-74 283.5 235 79.1
BolC3t15177H Brassica oleracea HOM05D003648 ORTHO05D004267 1.1e-71 274.2 240 75.4
C04p69480 Brassica napus HOM05D003648 ORTHO05D004267 8.1e-64 248.1 282 64.2
BolC4t28447H Brassica oleracea HOM05D003648 ORTHO05D004267 5.3e-63 245.4 284 63.4
BcaC02g07267 Brassica carinata HOM05D003648 ORTHO05D004267 4.2e-60 235.7 280 62.1
A04p31970 Brassica napus HOM05D003648 ORTHO05D004267 2.5e-57 226.5 282 61.3
BraA04t18655Z Brassica rapa HOM05D003648 ORTHO05D004267 1.1e-44 184.5 281 55.2
Aa31LG1G24140 Aethionema arabicum HOM05D003648 ORTHO05D004267 4.2e-44 182.6 296 50.3
BcaB06g29223 Brassica carinata HOM05D003648 ORTHO05D004267 2.2e-37 160.2 277 51.3
THA.LOC104824476 Tarenaya hassleriana HOM05D003648 ORTHO05D004267 1.6e-35 154.1 323 40.6
THA.LOC104802623 Tarenaya hassleriana HOM05D003648 ORTHO05D004267 2.7e-35 153.3 323 41.5
Gohir.A01G137604 Gossypium hirsutum HOM05D003648 ORTHO05D004267 6.1e-27 125.6 293 40.6
Gorai.002G156300 Gossypium raimondii HOM05D003648 ORTHO05D004267 5.1e-26 122.5 307 38.8
Gohir.D01G125600 Gossypium hirsutum HOM05D003648 ORTHO05D004267 6.7e-26 122.1 307 38.8
MD14G1055800 Malus domestica HOM05D003648 ORTHO05D004267 1.7e-24 117.5 397 31.7
ClCG10G017600 Citrullus lanatus HOM05D003648 ORTHO05D004267 4.1e-23 112.8 259 38.2
Phvul.007G260600 Phaseolus vulgaris HOM05D003648 ORTHO05D004267 9.1e-23 111.7 142 52.8
CiPaw.09G029700 Carya illinoinensis HOM05D003648 ORTHO05D004267 1.5e-22 110.9 350 34.0
Lj1g0001044 Lotus japonicus HOM05D003648 ORTHO05D004267 2.6e-22 110.2 153 51.0
GSVIVG01033486001 Vitis vinifera HOM05D003648 ORTHO05D004267 2.6e-22 110.2 96 63.5
Manes.08G043500 Manihot esculenta HOM05D003648 ORTHO05D004267 3.4e-22 109.8 331 33.8
Nn2g15698 Nelumbo nucifera HOM05D003648 ORTHO05D004267 3.4e-22 109.8 117 53.0
Actinidia22043 Actinidia chinensis HOM05D003648 ORTHO05D004267 5.9e-22 109.0 195 45.6
TPR.G18228 Trifolium pratense HOM05D003648 ORTHO05D004267 7.7e-22 108.6 130 54.6
Oeu039811.1 Olea europaea HOM05D003648 ORTHO05D004267 1.0e-21 108.2 95 63.2
VMungo0720G1699 Vigna mungo HOM05D003648 ORTHO05D004267 1.0e-21 108.2 130 53.8
Ciclev10012160m.g Citrus clementina HOM05D003648 ORTHO05D004267 1.3e-21 107.8 336 36.6
Gorai.012G100300 Gossypium raimondii HOM05D003648 ORTHO05D004267 1.3e-21 107.8 141 48.9
Peaxi162Scf00480g00036 Petunia axillaris HOM05D003648 ORTHO05D004267 1.3e-21 107.8 113 54.9
Potri.006G193500 Populus trichocarpa HOM05D003648 ORTHO05D004267 1.3e-21 107.8 356 31.5
Sabra16G0061400 Salix brachista HOM05D003648 ORTHO05D004267 1.3e-21 107.8 329 35.0
Manes.09G036200 Manihot esculenta HOM05D003648 ORTHO05D004267 1.7e-21 107.5 356 32.6
Gohir.A04G053800 Gossypium hirsutum HOM05D003648 ORTHO05D004267 2.2e-21 107.1 360 33.9
Medtr1g054175 Medicago truncatula HOM05D003648 ORTHO05D004267 2.2e-21 107.1 137 52.6
Potri.016G058100 Populus trichocarpa HOM05D003648 ORTHO05D004267 2.2e-21 107.1 344 34.3
MELO3C009616.2 Cucumis melo HOM05D003648 ORTHO05D004267 3.8e-21 106.3 113 57.5
RcHm_v2.0_Chr3g0479411 Rosa chinensis HOM05D003648 ORTHO05D004267 3.8e-21 106.3 365 32.1
Actinidia22042 Actinidia chinensis HOM05D003648 ORTHO05D004267 6.5e-21 105.5 134 50.0
Glyma.09G110100 Glycine max HOM05D003648 ORTHO05D004267 6.5e-21 105.5 142 51.4
Sabra06G0148600 Salix brachista HOM05D003648 ORTHO05D004267 8.5e-21 105.1 324 36.4
Potri.016G058000 Populus trichocarpa HOM05D003648 ORTHO05D004267 1.9e-20 104.0 325 34.8
Glyma.03G145500 Glycine max HOM05D003648 ORTHO05D004267 2.5e-20 103.6 138 50.7
Oeu007752.1 Olea europaea HOM05D003648 ORTHO05D004267 2.5e-20 103.6 274 34.3
Cfa020157 Carpinus fangiana HOM05D003648 ORTHO05D004267 3.2e-20 103.2 362 31.2
Sabra16G0061500 Salix brachista HOM05D003648 ORTHO05D004267 3.2e-20 103.2 325 34.5
TWI77G0250 Tripterygium wilfordii HOM05D003648 ORTHO05D004267 3.2e-20 103.2 354 31.6
Gohir.1Z049549 Gossypium hirsutum HOM05D003648 ORTHO05D004267 4.2e-20 102.8 111 55.9
MSTRG.19911 Avicennia marina HOM05D003648 ORTHO05D004267 5.5e-20 102.4 107 55.1
Cc06_g15770 Coffea canephora HOM05D003648 ORTHO05D004267 5.5e-20 102.4 143 46.2
Eucgr.A02456 Eucalyptus grandis HOM05D003648 ORTHO05D004267 5.5e-20 102.4 341 37.0
Glyma.02G171900 Glycine max HOM05D003648 ORTHO05D004267 7.2e-20 102.1 137 53.3
Lalb_Chr18g0047911 Lupinus albus HOM05D003648 ORTHO05D004267 7.2e-20 102.1 147 49.0
Nitab4.5_0003600g0010 Nicotiana tabacum HOM05D003648 ORTHO05D004267 7.2e-20 102.1 117 52.1
Sed0001893 Sechium edule HOM05D003648 ORTHO05D004267 7.2e-20 102.1 265 34.0
FAN02G2154 Fragaria x ananassa HOM05D003648 ORTHO05D004267 9.4e-20 101.7 375 32.5
Potri.006G193300 Populus trichocarpa HOM05D003648 ORTHO05D004267 9.4e-20 101.7 344 33.7
FvH4_6g22070 Fragaria vesca HOM05D003648 ORTHO05D004267 1.2e-19 101.3 376 32.2
FAN05G4067 Fragaria x ananassa HOM05D003648 ORTHO05D004267 1.6e-19 100.9 368 32.6
Lalb_Chr18g0047921 Lupinus albus HOM05D003648 ORTHO05D004267 1.6e-19 100.9 147 48.3
QL07p024078 Quercus lobata HOM05D003648 ORTHO05D004267 1.6e-19 100.9 368 33.7
TAR369G0578 Trochodendron aralioides HOM05D003648 ORTHO05D004267 1.6e-19 100.9 101 59.4
Haze_20001 Corylus avellana HOM05D003648 ORTHO05D004267 2.1e-19 100.5 149 45.6
FAN14G0601 Fragaria x ananassa HOM05D003648 ORTHO05D004267 2.1e-19 100.5 375 32.3
Gohir.D04G089900 Gossypium hirsutum HOM05D003648 ORTHO05D004267 2.7e-19 100.1 358 35.8
TWI53G1880 Tripterygium wilfordii HOM05D003648 ORTHO05D004267 2.7e-19 100.1 351 35.9
Ah.13g075770 Amaranthus hybridus HOM05D003648 ORTHO05D004267 3.6e-19 99.8 269 39.4
Sabra06G0148400 Salix brachista HOM05D003648 ORTHO05D004267 3.6e-19 99.8 335 31.3
CSS0001516 Camellia sinensis var. sinensis HOM05D003648 ORTHO05D004267 6.1e-19 99.0 137 48.2
Glyma.19G148700 Glycine max HOM05D003648 ORTHO05D004267 6.1e-19 99.0 136 47.1
Prupe.7G079000 Prunus persica HOM05D003648 ORTHO05D004267 7.9e-19 98.6 399 30.8
vmacro07898 Vaccinium macrocarpon HOM05D003648 ORTHO05D004267 7.9e-19 98.6 123 50.4
CiPaw.10G026000 Carya illinoinensis HOM05D003648 ORTHO05D004267 1.0e-18 98.2 133 48.9
Haze_20003 Corylus avellana HOM05D003648 ORTHO05D004267 1.0e-18 98.2 370 32.7
CsaV3_3G038720 Cucumis sativus L. HOM05D003648 ORTHO05D004267 1.0e-18 98.2 303 35.0
FAN09G0401 Fragaria x ananassa HOM05D003648 ORTHO05D004267 1.0e-18 98.2 370 32.7
Nn7g35986 Nelumbo nucifera HOM05D003648 ORTHO05D004267 1.8e-18 97.4 134 47.0
VMungo1383G3335 Vigna mungo HOM05D003648 ORTHO05D004267 1.8e-18 97.4 133 46.6
COL.COLO4_29331 Corchorus olitorius HOM05D003648 ORTHO05D004267 2.3e-18 97.1 395 33.2
Lj5g0018704 Lotus japonicus HOM05D003648 ORTHO05D004267 2.3e-18 97.1 131 49.6
Phvul.001G143000 Phaseolus vulgaris HOM05D003648 ORTHO05D004267 2.3e-18 97.1 124 50.0
PGR004G0238 Punica granatum HOM05D003648 ORTHO05D004267 2.3e-18 97.1 112 53.6
Hund19206 Selenicereus undatus HOM05D003648 ORTHO05D004267 2.3e-18 97.1 311 32.2
Atru.chr8.1128 Acer truncatum HOM05D003648 ORTHO05D004267 3.0e-18 96.7 129 47.3
CDE05G0371 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 3.0e-18 96.7 105 54.3
Medtr7g093360 Medicago truncatula HOM05D003648 ORTHO05D004267 3.0e-18 96.7 131 48.9
Thecc.05G173300 Theobroma cacao HOM05D003648 ORTHO05D004267 3.0e-18 96.7 214 35.5
Nitab4.5_0006890g0010 Nicotiana tabacum HOM05D003648 ORTHO05D004267 3.9e-18 96.3 110 51.8
Hma1.2p1_0431F.1_g151600 Hydrangea macrophylla HOM05D003648 ORTHO05D004267 5.1e-18 95.9 127 49.6
Manes.08G043600 Manihot esculenta HOM05D003648 ORTHO05D004267 6.7e-18 95.5 329 31.6
TPR.G15988 Trifolium pratense HOM05D003648 ORTHO05D004267 8.8e-18 95.1 223 36.3
Aqoxy2G00100 Aquilegia oxysepala HOM05D003648 ORTHO05D004267 2.0e-17 94.0 101 53.5
DCAR_013539 Daucus carota HOM05D003648 ORTHO05D004267 2.0e-17 94.0 170 38.8
CANSAT64G1307 Cannabis sativa HOM05D003648 ORTHO05D004267 2.6e-17 93.6 194 39.2
Cpa.g.sc85.54 Carica papaya HOM05D003648 ORTHO05D004267 2.6e-17 93.6 376 32.7
DCAR_017003 Daucus carota HOM05D003648 ORTHO05D004267 3.3e-17 93.2 54 77.8
Migut.J01846 Erythranthe guttata HOM05D003648 ORTHO05D004267 3.3e-17 93.2 120 47.5
Rhsim03G0005500 Rhododendron simsii HOM05D003648 ORTHO05D004267 3.3e-17 93.2 49 81.6
Lsat_1_v5_gn_9_26100 Lactuca sativa HOM05D003648 ORTHO05D004267 4.4e-17 92.8 191 37.7
PGSC0003DMG400023669 Solanum tuberosum HOM05D003648 ORTHO05D004267 4.4e-17 92.8 292 32.2
Nn2g15714 Nelumbo nucifera HOM05D003648 ORTHO05D004267 7.4e-17 92.0 125 46.4
GSVIVG01033479001 Vitis vinifera HOM05D003648 ORTHO05D004267 7.4e-17 92.0 111 53.2
CAN.G128.46 Capsicum annuum HOM05D003648 ORTHO05D004267 9.7e-17 91.7 124 46.0
Medtr7g093350 Medicago truncatula HOM05D003648 ORTHO05D004267 9.7e-17 91.7 232 34.1
Psat3g068040 Pisum sativum HOM05D003648 ORTHO05D004267 9.7e-17 91.7 52 78.8
arahy.Tifrunner.gnm1.ann1.DZ4RFW Arachis hypogaea HOM05D003648 ORTHO05D004267 1.3e-16 91.3 121 49.6
Dinv16371 Davidia involucrata HOM05D003648 ORTHO05D004267 1.3e-16 91.3 142 43.0
MD12G1056100 Malus domestica HOM05D003648 ORTHO05D004267 2.2e-16 90.5 283 32.2
HPP92_016181 Vanilla planifolia HOM05D003648 ORTHO05D004267 2.2e-16 90.5 201 37.3
CAN.G128.47 Capsicum annuum HOM05D003648 ORTHO05D004267 2.8e-16 90.1 121 45.5
Dinv14314 Davidia involucrata HOM05D003648 ORTHO05D004267 2.8e-16 90.1 62 71.0
Duzib093G1879 Durio zibethinus HOM05D003648 ORTHO05D004267 2.8e-16 90.1 383 29.8
HPP92_026735 Vanilla planifolia HOM05D003648 ORTHO05D004267 2.8e-16 90.1 201 37.3
Dinv24064 Davidia involucrata HOM05D003648 ORTHO05D004267 4.8e-16 89.4 110 50.9
MBI19_g43859_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 4.8e-16 89.4 50 78.0
EL10Ac3g06898 Beta vulgaris HOM05D003648 ORTHO05D004267 8.2e-16 88.6 344 34.9
CDE11G0439 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 8.2e-16 88.6 49 81.6
Duzib128G0816 Durio zibethinus HOM05D003648 ORTHO05D004267 8.2e-16 88.6 287 32.1
Ah.04g152510 Amaranthus hybridus HOM05D003648 ORTHO05D004267 1.1e-15 88.2 332 35.2
arahy.Tifrunner.gnm1.ann1.AL1Y46 Arachis hypogaea HOM05D003648 ORTHO05D004267 1.4e-15 87.8 157 41.4
arahy.Tifrunner.gnm1.ann1.SE7UXR Arachis hypogaea HOM05D003648 ORTHO05D004267 1.4e-15 87.8 156 41.7
MBI13_g32435_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 1.4e-15 87.8 50 76.0
MBI19_g03064_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 2.4e-15 87.0 49 79.6
AUR62015354 Chenopodium quinoa HOM05D003648 ORTHO05D004267 3.1e-15 86.7 106 54.7
Actinidia32398 Actinidia chinensis HOM05D003648 ORTHO05D004267 5.3e-15 85.9 303 31.7
arahy.Tifrunner.gnm1.ann1.D8BKSU Arachis hypogaea HOM05D003648 ORTHO05D004267 5.3e-15 85.9 315 30.5
TAR623G0235 Trochodendron aralioides HOM05D003648 ORTHO05D004267 5.3e-15 85.9 39 92.3
Solyc10g080530.2 Solanum lycopersicum HOM05D003648 ORTHO05D004267 7.0e-15 85.5 240 34.2
ECA247G1467 Erigeron canadensis HOM05D003648 ORTHO05D004267 1.2e-14 84.7 187 33.7
Psat0s5171g0040 Pisum sativum HOM05D003648 ORTHO05D004267 1.2e-14 84.7 47 80.9
MSTRG.6486 Avicennia marina HOM05D003648 ORTHO05D004267 1.6e-14 84.3 293 32.1
CDE04G2150 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 1.6e-14 84.3 106 49.1
TAR633G0715 Trochodendron aralioides HOM05D003648 ORTHO05D004267 2.0e-14 84.0 353 32.6
Nn7g36026 Nelumbo nucifera HOM05D003648 ORTHO05D004267 2.6e-14 83.6 56 66.1
HanXRQChr10g0289891 Helianthus annuus HOM05D003648 ORTHO05D004267 4.5e-14 82.8 199 35.7
Nn7g35998 Nelumbo nucifera HOM05D003648 ORTHO05D004267 7.7e-14 82.0 146 39.7
Os02g0773600 Oryza sativa ssp. japonica HOM05D003648 ORTHO05D004267 7.7e-14 82.0 61 70.5
CDE06G0452 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 1.3e-13 81.3 103 48.5
BcaB01g03437 Brassica carinata HOM05D003648 ORTHO05D004267 1.7e-13 80.9 63 81.0
MBI19_g23209_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 1.7e-13 80.9 61 65.6
Zm00001eb193290 Zea mays HOM05D003648 ORTHO05D004267 1.5e-12 77.8 85 52.9
Os06g0207600 Oryza sativa ssp. japonica HOM05D003648 ORTHO05D004267 1.6e-11 74.3 55 63.6
SEGI_21966 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 1.6e-11 74.3 45 71.1
ATR0598G173 Amborella trichopoda HOM05D003648 ORTHO05D004267 8.0e-11 72.0 147 36.7
SEGI_34260 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 1.4e-10 71.2 56 57.1
SalBow6G7267 Salvia bowleyana HOM05D003648 ORTHO05D004267 3.0e-10 70.1 263 31.6
SEGI_22789 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 2.0e-09 67.4 53 60.4
SEGI_00470 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 2.6e-09 67.0 45 64.4
SEGI_09004 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 5.7e-09 65.9 79 49.4
Dinv36431 Davidia involucrata HOM05D003648 ORTHO05D004267 8.2e-08 62.0 67 53.7
Aqoxy1G04270 Aquilegia oxysepala HOM05D003648 ORTHO05D004267 9.1e-07 58.5 48 54.2
Thecc.05G174100 Theobroma cacao HOM05D014635 ORTHO05D014310 1.2e-06 58.2 131 36.6
Actinidia22048 Actinidia chinensis HOM05D003648 ORTHO05D014310 2.7e-06 57.0 206 30.1
ATR0598G250 Amborella trichopoda HOM05D003648 ORTHO05D004267 5.9e-06 55.8 74 40.5


User provided reference genes

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