Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR137070 Cardamine hirsuta HOM05D006815 ORTHO05D008536 1.8e-108 396.0 205 100.0
AT2G41950 Arabidopsis thaliana HOM05D006815 ORTHO05D008536 1.4e-92 343.2 201 88.1
AL4G40310 Arabidopsis lyrata HOM05D006815 ORTHO05D008536 2.4e-89 332.4 201 86.1
Carub.0004s2428 Capsella rubella HOM05D006815 ORTHO05D008536 2.7e-88 328.9 201 83.6
Sp4g24220 Schrenkiella parvula HOM05D006815 ORTHO05D008536 8.7e-87 323.9 201 86.1
Thhalv10017089m.g Eutrema salsugineum HOM05D006815 ORTHO05D008536 1.1e-86 323.6 202 85.6
BcaC02g12449 Brassica carinata HOM05D006815 ORTHO05D008536 2.2e-82 309.3 201 81.6
C04p03160 Brassica napus HOM05D006815 ORTHO05D008536 2.2e-82 309.3 201 81.6
BolC4t21956H Brassica oleracea HOM05D006815 ORTHO05D008536 2.2e-82 309.3 201 81.6
Aa31LG1G24180 Aethionema arabicum HOM05D006815 ORTHO05D008536 2.9e-82 308.9 203 80.8
BraA05t19258Z Brassica rapa HOM05D006815 ORTHO05D008536 1.6e-77 293.1 203 77.8
A05p02650 Brassica napus HOM05D006815 ORTHO05D008536 2.8e-77 292.4 203 77.8
THA.LOC104824483 Tarenaya hassleriana HOM05D006815 ORTHO05D008536 1.1e-62 243.8 210 65.7
Ciclev10012299m.g Citrus clementina HOM05D006815 ORTHO05D008536 1.3e-50 203.8 216 59.7
Gohir.D01G124800 Gossypium hirsutum HOM05D006815 ORTHO05D008536 9.4e-49 197.6 209 55.0
Sabra06G0149300 Salix brachista HOM05D006815 ORTHO05D008536 9.4e-49 197.6 156 64.7
Cpa.g.sc9.26 Carica papaya HOM05D006815 ORTHO05D008536 1.6e-48 196.8 206 56.8
Duzib106G1458 Durio zibethinus HOM05D006815 ORTHO05D008536 1.6e-48 196.8 204 54.4
Gohir.A01G137200 Gossypium hirsutum HOM05D006815 ORTHO05D008536 3.6e-48 195.7 209 55.0
Lj2C363G3 Lonicera japonica HOM05D006815 ORTHO05D008536 3.6e-48 195.7 150 67.3
Gorai.002G155400 Gossypium raimondii HOM05D006815 ORTHO05D008536 7.9e-48 194.5 208 53.8
Cfa020143 Carpinus fangiana HOM05D006815 ORTHO05D008536 1.8e-47 193.4 205 56.6
TAR369G0232 Trochodendron aralioides HOM05D006815 ORTHO05D008536 3.9e-47 192.2 157 61.8
Haze_20023 Corylus avellana HOM05D006815 ORTHO05D008536 6.7e-47 191.4 205 55.6
Thecc.05G174900 Theobroma cacao HOM05D006815 ORTHO05D008536 6.7e-47 191.4 204 54.9
COL.COLO4_29358 Corchorus olitorius HOM05D006815 ORTHO05D008536 8.8e-47 191.0 201 54.2
Haze_20020 Corylus avellana HOM05D006815 ORTHO05D008536 8.8e-47 191.0 205 55.6
CsaV3_3G038620 Cucumis sativus L. HOM05D006815 ORTHO05D008536 2.6e-46 189.5 199 54.3
Potri.006G194600 Populus trichocarpa HOM05D006815 ORTHO05D008536 2.6e-46 189.5 201 53.7
ClCG10G017680 Citrullus lanatus HOM05D006815 ORTHO05D008536 9.7e-46 187.6 153 62.7
AUR62015334 Chenopodium quinoa HOM05D006815 ORTHO05D008536 1.3e-45 187.2 207 55.1
Sc13g0002390 Simmondsia chinensis HOM05D006815 ORTHO05D008536 1.7e-45 186.8 209 54.5
CiPaw.09G028400 Carya illinoinensis HOM05D006815 ORTHO05D008536 6.3e-45 184.9 208 54.3
AUR62012005 Chenopodium quinoa HOM05D006815 ORTHO05D008536 6.3e-45 184.9 206 54.9
TWI53G1298 Tripterygium wilfordii HOM05D006815 ORTHO05D008536 6.3e-45 184.9 201 54.2
MELO3C009608.2 Cucumis melo HOM05D006815 ORTHO05D008536 8.2e-45 184.5 201 53.2
Dinv24040 Davidia involucrata HOM05D006815 ORTHO05D008536 1.1e-44 184.1 212 52.4
Manes.08G042600 Manihot esculenta HOM05D006815 ORTHO05D008536 1.1e-44 184.1 208 54.3
Actinidia22067 Actinidia chinensis HOM05D006815 ORTHO05D008536 1.4e-44 183.7 207 50.2
HanXRQChr01g0024541 Helianthus annuus HOM05D006815 ORTHO05D008536 1.4e-44 183.7 201 51.7
PGR004G0977 Punica granatum HOM05D006815 ORTHO05D008536 1.4e-44 183.7 205 55.1
PGSC0003DMG400001108 Solanum tuberosum HOM05D006815 ORTHO05D008536 1.8e-44 183.3 141 63.8
Atru.chr8.1155 Acer truncatum HOM05D006815 ORTHO05D008536 6.9e-44 181.4 137 68.6
CANSAT64G2825 Cannabis sativa HOM05D006815 ORTHO05D008536 9.1e-44 181.0 141 64.5
ECA248G0678 Erigeron canadensis HOM05D006815 ORTHO05D008536 9.1e-44 181.0 207 51.7
MD14G1054000 Malus domestica HOM05D006815 ORTHO05D008536 9.1e-44 181.0 201 54.2
Solyc03g053020.4 Solanum lycopersicum HOM05D006815 ORTHO05D008536 1.2e-43 180.6 141 63.1
RcHm_v2.0_Chr3g0479231 Rosa chinensis HOM05D006815 ORTHO05D008536 1.5e-43 180.3 137 66.4
Prupe.7G081100 Prunus persica HOM05D006815 ORTHO05D008536 2.0e-43 179.9 207 53.6
QL07p024496 Quercus lobata HOM05D006815 ORTHO05D008536 2.0e-43 179.9 207 54.6
Sopen03g011500 Solanum pennellii HOM05D006815 ORTHO05D008536 3.4e-43 179.1 213 50.2
CAN.G1314.3 Capsicum annuum HOM05D006815 ORTHO05D008536 5.9e-43 178.3 141 62.4
EL10Ac3g06884 Beta vulgaris HOM05D006815 ORTHO05D008536 1.0e-42 177.6 161 57.1
Nitab4.5_0000009g0210 Nicotiana tabacum HOM05D006815 ORTHO05D008536 1.0e-42 177.6 160 57.5
Sed0026757 Sechium edule HOM05D006815 ORTHO05D008536 1.3e-42 177.2 150 59.3
Cc06_g15510 Coffea canephora HOM05D006815 ORTHO05D008536 1.7e-42 176.8 143 62.9
FvH4_6g21880 Fragaria vesca HOM05D006815 ORTHO05D008536 1.7e-42 176.8 137 64.2
FAN14G3951 Fragaria x ananassa HOM05D006815 ORTHO05D008536 1.7e-42 176.8 137 64.2
Peaxi162Scf00463g00417 Petunia axillaris HOM05D006815 ORTHO05D008536 1.7e-42 176.8 144 63.9
Nitab4.5_0002339g0010 Nicotiana tabacum HOM05D006815 ORTHO05D008536 2.9e-42 176.0 152 59.9
FAN09G4209 Fragaria x ananassa HOM05D006815 ORTHO05D008536 3.8e-42 175.6 137 64.2
DCAR_013671 Daucus carota HOM05D006815 ORTHO05D008536 6.5e-42 174.9 157 59.2
Eucgr.A02470 Eucalyptus grandis HOM05D006815 ORTHO05D008536 8.5e-42 174.5 174 54.0
Lsat_1_v5_gn_1_60941 Lactuca sativa HOM05D006815 ORTHO05D008536 8.5e-42 174.5 205 46.8
FAN02G2829 Fragaria x ananassa HOM05D006815 ORTHO05D008536 1.1e-41 174.1 136 64.0
Hund19213 Selenicereus undatus HOM05D006815 ORTHO05D008536 1.1e-41 174.1 146 58.2
CAN.G274.29 Capsicum annuum HOM05D006815 ORTHO05D008536 3.2e-41 172.6 141 61.7
Nn2g15741 Nelumbo nucifera HOM05D006815 ORTHO05D008536 3.2e-41 172.6 200 53.5
Lalb_Chr15g0079111 Lupinus albus HOM05D006815 ORTHO05D008536 5.5e-41 171.8 163 55.2
Migut.J01868 Erythranthe guttata HOM05D006815 ORTHO05D008536 9.4e-41 171.0 191 53.4
GSVIVG01033467001 Vitis vinifera HOM05D006815 ORTHO05D008536 9.4e-41 171.0 125 68.8
SGA_v2.0_scaffold57G20097 Striga asiatica HOM05D006815 ORTHO05D008536 2.1e-40 169.9 175 53.1
Aqoxy2G00089 Aquilegia oxysepala HOM05D006815 ORTHO05D008536 2.7e-40 169.5 209 50.7
MSTRG.6498 Avicennia marina HOM05D006815 ORTHO05D008536 1.0e-39 167.5 211 49.3
Oeu035701.1 Olea europaea HOM05D006815 ORTHO05D008536 3.0e-39 166.0 143 60.8
Rhsim03G0035800 Rhododendron simsii HOM05D006815 ORTHO05D008536 3.0e-39 166.0 142 59.9
SalBow6G3515 Salvia bowleyana HOM05D006815 ORTHO05D008536 3.0e-39 166.0 138 60.1
vmacro22625 Vaccinium macrocarpon HOM05D006815 ORTHO05D008536 3.9e-39 165.6 193 53.4
PSO541G3114 Papaver somniferum HOM05D006815 ORTHO05D008536 3.3e-38 162.5 205 49.8
arahy.Tifrunner.gnm1.ann1.8HEC25 Arachis hypogaea HOM05D006815 ORTHO05D008536 4.4e-38 162.2 172 52.9
PSO675G7684 Papaver somniferum HOM05D006815 ORTHO05D008536 5.7e-38 161.8 205 49.3
arahy.Tifrunner.gnm1.ann1.G1RGZB Arachis hypogaea HOM05D006815 ORTHO05D008536 9.7e-38 161.0 164 54.9
arahy.Tifrunner.gnm1.ann1.TZP9CN Arachis hypogaea HOM05D006815 ORTHO05D008536 2.2e-37 159.8 172 52.3
CSS0043811 Camellia sinensis var. sinensis HOM05D006815 ORTHO05D008536 6.3e-37 158.3 135 60.7
CSS0019995 Camellia sinensis var. sinensis HOM05D006815 ORTHO05D008536 9.1e-36 154.5 135 58.5
Phvul.001G144400 Phaseolus vulgaris HOM05D006815 ORTHO05D008536 4.5e-35 152.1 208 46.6
Glyma.19G149900 Glycine max HOM05D006815 ORTHO05D008536 7.7e-35 151.4 153 53.6
unitig_37.g12377 Utricularia gibba HOM05D006815 ORTHO05D008536 7.7e-35 151.4 148 55.4
Glyma.03G146600 Glycine max HOM05D006815 ORTHO05D008536 3.8e-34 149.1 153 53.6
VMungo1383G0507 Vigna mungo HOM05D006815 ORTHO05D008536 9.4e-33 144.4 200 44.5
Psat3g067520 Pisum sativum HOM05D006815 ORTHO05D008536 2.7e-32 142.9 166 49.4
Lj1g0024455 Lotus japonicus HOM05D006815 ORTHO05D008536 1.4e-31 140.6 183 47.5
ATR0598G218 Amborella trichopoda HOM05D006815 ORTHO05D008536 2.3e-31 139.8 206 47.6
CDE05G2500 Ceratophyllum demersum HOM05D006815 ORTHO05D008536 2.3e-31 139.8 194 45.4
MBI19_g17427_MAGBIO Magnolia biondii HOM05D006815 ORTHO05D008536 2.6e-30 136.3 205 41.5
Medtr7g093640 Medicago truncatula HOM05D006815 ORTHO05D008536 4.4e-30 135.6 189 44.4
TPR.G13363 Trifolium pratense HOM05D006815 ORTHO05D008536 5.7e-30 135.2 156 47.4
CDE11G0339 Ceratophyllum demersum HOM05D006815 ORTHO05D008536 3.7e-29 132.5 206 42.2
Ca_08540_v3 Cicer arietinum L. HOM05D006815 ORTHO05D008536 1.8e-28 130.2 148 50.0
MD12G1054600 Malus domestica HOM05D006815 ORTHO05D008536 2.4e-28 129.8 85 74.1
arahy.Tifrunner.gnm1.ann1.70NGGP Arachis hypogaea HOM05D006815 ORTHO05D008536 9.1e-28 127.9 172 46.5
HPP92_023458 Vanilla planifolia HOM05D006815 ORTHO05D008536 3.8e-26 122.5 144 45.1
HPP92_023474 Vanilla planifolia HOM05D006815 ORTHO05D008536 6.5e-26 121.7 144 44.4
arahy.Tifrunner.gnm1.ann1.13XKQP Arachis hypogaea HOM05D006815 ORTHO05D008536 9.4e-25 117.9 141 51.1
BcaC03g14280 Brassica carinata HOM05D006815 ORTHO05D008536 3.4e-22 109.4 74 78.4
C02p16600 Brassica napus HOM05D006815 ORTHO05D008536 2.2e-21 106.7 71 78.9
BolC2t07761H Brassica oleracea HOM05D006815 ORTHO05D008536 3.7e-21 105.9 71 78.9
Zm00001eb009870 Zea mays HOM05D006815 ORTHO05D008536 2.3e-15 86.7 141 34.0
SEGI_06955 Sequoiadendron giganteum HOM05D006815 ORTHO05D008536 8.8e-15 84.7 123 38.2
SEGI_30907 Sequoiadendron giganteum HOM05D006815 ORTHO05D008536 8.8e-15 84.7 123 38.2
Os03g0226700 Oryza sativa ssp. japonica HOM05D006815 ORTHO05D008536 1.2e-14 84.3 145 34.5
Pp3c12_7730 Physcomitrium patens HOM05D006815 ORTHO05D008536 2.9e-10 69.7 152 30.9
Mapoly0159s0012 Marchantia polymorpha HOM05D006815 ORTHO05D008536 1.6e-08 63.9 126 31.7


User provided reference genes

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