Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR135280 Cardamine hirsuta HOM05D007655 ORTHO05D009698 2.1e-125 453.0 340 100.0
AL4G37960 Arabidopsis lyrata HOM05D007655 ORTHO05D009698 1.7e-95 353.6 336 84.8
Carub.0004s2246 Capsella rubella HOM05D007655 ORTHO05D009698 2.1e-93 346.7 333 85.0
AT2G40240 Arabidopsis thaliana HOM05D007655 ORTHO05D009698 1.0e-92 344.4 336 83.3
Aa31LG5G19330 Aethionema arabicum HOM05D007655 ORTHO05D009698 5.1e-76 288.9 328 63.7
Sp5g06510 Schrenkiella parvula HOM05D007655 ORTHO05D009698 6.9e-73 278.5 331 64.7
CARHR166100 Cardamine hirsuta HOM05D007655 ORTHO05D009698 7.7e-72 275.0 332 65.4
Thhalv10006093m.g Eutrema salsugineum HOM05D007655 ORTHO05D009698 7.7e-72 275.0 331 67.4
A09p48980 Brassica napus HOM05D007655 ORTHO05D009698 1.0e-71 274.6 329 64.4
BraA09t40353Z Brassica rapa HOM05D007655 ORTHO05D009698 1.0e-71 274.6 329 64.4
AT3G56030 Arabidopsis thaliana HOM05D007655 ORTHO05D009698 1.1e-70 271.2 334 56.3
Aa31LG10G10970 Aethionema arabicum HOM05D007655 ORTHO05D009698 3.2e-70 269.6 330 73.0
AL5G37300 Arabidopsis lyrata HOM05D007655 ORTHO05D009698 1.6e-69 267.3 329 55.6
C08p31340 Brassica napus HOM05D007655 ORTHO05D009698 2.1e-69 266.9 332 63.6
BolC8t50755H Brassica oleracea HOM05D007655 ORTHO05D009698 2.1e-69 266.9 332 63.6
Carub.0005s2276 Capsella rubella HOM05D007655 ORTHO05D009698 1.8e-68 263.8 334 57.2
THA.LOC104810115 Tarenaya hassleriana HOM05D007655 ORTHO05D009698 9.1e-49 198.4 333 65.8
Cfa013933 Carpinus fangiana HOM05D007655 ORTHO05D009698 1.0e-39 168.3 333 39.0
Cpa.g.sc19.153 Carica papaya HOM05D007655 ORTHO05D009698 1.3e-39 167.9 286 66.4
Thecc.10G013100 Theobroma cacao HOM05D007655 ORTHO05D009698 3.6e-37 159.8 344 59.3
RcHm_v2.0_Chr1g0370651 Rosa chinensis HOM05D007655 ORTHO05D009698 1.4e-36 157.9 329 59.0
Atru.chr12.88 Acer truncatum HOM05D007655 ORTHO05D009698 2.3e-36 157.1 289 40.1
TWI09G1069 Tripterygium wilfordii HOM05D007655 ORTHO05D009698 2.3e-36 157.1 287 64.5
Haze_22616 Corylus avellana HOM05D007655 ORTHO05D009698 5.2e-36 156.0 327 42.8
QL08p063505 Quercus lobata HOM05D007655 ORTHO05D009698 2.2e-34 150.6 333 56.5
Manes.09G163100 Manihot esculenta HOM05D004613 ORTHO05D006095 4.9e-34 149.4 294 48.3
COL.COLO4_06431 Corchorus olitorius HOM05D007655 ORTHO05D009698 2.4e-33 147.1 334 56.3
Lj1P959T25 Lonicera japonica HOM05D007655 ORTHO05D009698 5.4e-33 146.0 287 62.4
Aqoxy3G03604 Aquilegia oxysepala HOM05D007655 ORTHO05D009698 3.5e-32 143.3 288 62.5
CiPaw.02G194200 Carya illinoinensis HOM05D007655 ORTHO05D009698 4.5e-32 142.9 325 39.7
Solyc03g095960.1 Solanum lycopersicum HOM05D007655 ORTHO05D009698 1.0e-31 141.7 319 56.7
Ciclev10033792m.g Citrus clementina HOM05D007655 ORTHO05D000636 2.9e-31 140.2 312 59.0
Sopen03g025960 Solanum pennellii HOM05D007655 ORTHO05D009698 2.9e-31 140.2 319 56.1
Cc00_g02280 Coffea canephora HOM05D007655 ORTHO05D009698 3.8e-31 139.8 298 45.0
Nitab4.5_0006468g0020 Nicotiana tabacum HOM05D007655 ORTHO05D009698 1.5e-30 137.9 327 54.4
Hma1.2p1_0523F.1_g172110 Hydrangea macrophylla HOM05D007655 ORTHO05D009698 2.5e-30 137.1 286 46.9
FAN06G4929 Fragaria x ananassa HOM05D007655 ORTHO05D009698 3.3e-30 136.7 327 45.6
PGR044G0328 Punica granatum HOM05D007655 ORTHO05D009698 4.3e-30 136.3 278 48.2
PGSC0003DMG400027723 Solanum tuberosum HOM05D007655 ORTHO05D009698 4.3e-30 136.3 292 58.9
Sc14g0002050 Simmondsia chinensis HOM05D007655 ORTHO05D009698 1.6e-29 134.4 293 57.0
Nitab4.5_0002701g0030 Nicotiana tabacum HOM05D007655 ORTHO05D009698 2.8e-29 133.7 292 43.8
TAR131G0001 Trochodendron aralioides HOM05D007655 ORTHO05D009698 2.8e-29 133.7 293 60.4
TAR623G1347 Trochodendron aralioides HOM05D007655 ORTHO05D009698 2.8e-29 133.7 293 60.4
FvH4_7g24790 Fragaria vesca HOM05D007655 ORTHO05D009698 3.6e-29 133.3 327 45.3
CAN.G1161.24 Capsicum annuum HOM05D007655 ORTHO05D009698 4.7e-29 132.9 293 39.6
Ca_19338_v3 Cicer arietinum L. HOM05D007655 ORTHO05D009698 4.7e-29 132.9 338 38.8
Gohir.A06G170600 Gossypium hirsutum HOM05D007655 ORTHO05D009698 1.4e-28 131.3 337 46.6
Medtr6g065100 Medicago truncatula HOM05D007655 ORTHO05D009698 1.8e-28 131.0 338 42.0
Rhsim09G0178900 Rhododendron simsii HOM05D007655 ORTHO05D009698 4.0e-28 129.8 289 62.3
Lalb_Chr03g0033351 Lupinus albus HOM05D007655 ORTHO05D009698 1.5e-27 127.9 333 29.7
Psat1g113880 Pisum sativum HOM05D007655 ORTHO05D009698 2.0e-27 127.5 331 30.5
MSTRG.197 Avicennia marina HOM05D007655 ORTHO05D009698 3.4e-27 126.7 284 31.7
Sopen03g025950 Solanum pennellii HOM05D007655 ORTHO05D009698 9.8e-27 125.2 311 55.6
DCAR_029510 Daucus carota HOM05D007655 ORTHO05D009698 1.3e-26 124.8 299 33.1
TPR.G40357 Trifolium pratense HOM05D007655 ORTHO05D009698 2.2e-26 124.0 328 29.3
Lj2g0024512 Lotus japonicus HOM05D007655 ORTHO05D009698 4.9e-26 122.9 325 40.6
Duzib106G0934 Durio zibethinus HOM05D007655 ORTHO05D009698 1.4e-25 121.3 338 55.3
Migut.F01479 Erythranthe guttata HOM05D007655 ORTHO05D009698 2.4e-25 120.6 296 56.4
Actinidia00669 Actinidia chinensis HOM05D007655 ORTHO05D009698 5.4e-25 119.4 300 30.0
CANSAT56G4119 Cannabis sativa HOM05D007655 ORTHO05D009698 9.2e-25 118.6 292 57.2
Ca_25253_v3 Cicer arietinum L. HOM05D007655 ORTHO05D009698 1.2e-24 118.2 314 35.4
GSVIVG01032781001 Vitis vinifera HOM05D007655 ORTHO05D009698 1.2e-24 118.2 300 60.3
FAN10G0222 Fragaria x ananassa HOM05D007655 ORTHO05D009698 5.9e-24 115.9 327 44.6
vmacro10028 Vaccinium macrocarpon HOM05D007655 ORTHO05D009698 3.0e-23 113.6 302 58.3
Glyma.09G157400 Glycine max HOM05D007655 ORTHO05D009698 2.1e-21 107.5 338 41.1
Gorai.N006800 Gossypium raimondii HOM05D007655 ORTHO05D009698 3.6e-21 106.7 337 47.5
HanXRQChr09g0253251 Helianthus annuus HOM05D007655 ORTHO05D009698 3.6e-21 106.7 329 34.0
Gohir.D06G178400 Gossypium hirsutum HOM05D007655 ORTHO05D009698 4.7e-21 106.3 337 47.2
Phvul.004G132400 Phaseolus vulgaris HOM05D007655 ORTHO05D009698 2.3e-20 104.0 296 37.5
VMungo0464G0151 Vigna mungo HOM05D007655 ORTHO05D009698 2.0e-19 100.9 296 41.6
CSS0030670 Camellia sinensis var. sinensis HOM05D007655 ORTHO05D009698 4.4e-19 99.8 81 58.0
Lsat_1_v5_gn_9_61061 Lactuca sativa HOM05D007655 ORTHO05D009698 5.4e-17 92.8 303 56.8
Oeu029071.1 Olea europaea HOM05D007655 ORTHO05D009698 7.0e-17 92.4 293 57.7
Haze_17251 Corylus avellana HOM05D007655 ORTHO05D009698 3.5e-16 90.1 103 40.8
arahy.Tifrunner.gnm1.ann1.L8T4NM Arachis hypogaea HOM05D007655 ORTHO05D009698 6.0e-16 89.4 129 41.1
Peaxi162Scf00304g00006 Petunia axillaris HOM05D007655 ORTHO05D009698 1.3e-15 88.2 306 26.5
SalBow5G5388 Salvia bowleyana HOM05D007655 ORTHO05D009698 1.7e-15 87.8 146 38.4
CDE06G0331 Ceratophyllum demersum HOM05D007655 ORTHO05D009698 1.5e-14 84.7 287 50.2
ECA232G4997 Erigeron canadensis HOM05D007655 ORTHO05D009698 1.5e-14 84.7 305 39.3
CDE12G0438 Ceratophyllum demersum HOM05D007655 ORTHO05D009698 2.5e-14 84.0 130 39.2
FAN03G2547 Fragaria x ananassa HOM05D007655 ORTHO05D009698 6.2e-13 79.3 250 46.4
ATR0174G045 Amborella trichopoda HOM05D007655 ORTHO05D009698 2.3e-12 77.4 123 35.0
arahy.Tifrunner.gnm1.ann1.P4Y6YZ Arachis hypogaea HOM05D000585 ORTHO05D001841 5.2e-12 76.3 105 41.9
Nn2g13207 Nelumbo nucifera HOM05D007655 ORTHO05D009698 8.9e-12 75.5 78 52.6
MBI15_g28821_MAGBIO Magnolia biondii HOM05D007655 ORTHO05D009698 2.0e-11 74.3 293 37.5
Lalb_Chr19g0131421 Lupinus albus HOM05D007655 ORTHO05D009698 9.8e-11 72.0 82 42.7
ATR0030G034 Amborella trichopoda HOM05D007655 ORTHO05D009698 4.9e-10 69.7 112 37.5
FAN01G0024 Fragaria x ananassa HOM05D007655 ORTHO05D009698 2.4e-09 67.4 80 45.0
CDE04G2579 Ceratophyllum demersum HOM05D007655 ORTHO05D009698 3.5e-08 63.5 146 30.1


User provided reference genes

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