Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR135090 Cardamine hirsuta HOM05D003761 ORTHO05D004412 4.1e-87 324.7 165 100.0
Carub.0004s2229 Capsella rubella HOM05D003761 ORTHO05D004412 3.4e-73 278.5 165 81.2
AT2G40113 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 2.2e-72 275.8 166 81.9
AL4G37770 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 3.7e-72 275.0 167 82.0
Thhalv10017342m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 5.9e-70 267.7 165 80.6
Sp4g22430 Schrenkiella parvula HOM05D003761 ORTHO05D004412 1.0e-69 266.9 165 75.8
A05p06360 Brassica napus HOM05D003761 ORTHO05D004412 8.6e-69 263.8 165 75.8
BolC4t22355H Brassica oleracea HOM05D003761 ORTHO05D004412 8.6e-69 263.8 165 75.8
BraA05t19604Z Brassica rapa HOM05D003761 ORTHO05D004412 8.6e-69 263.8 165 75.8
BraA04t18501Z Brassica rapa HOM05D003761 ORTHO05D004412 1.5e-68 263.1 152 80.9
BcaB02g09050 Brassica carinata HOM05D003761 ORTHO05D004412 3.3e-68 261.9 166 76.5
A04p30050 Brassica napus HOM05D003761 ORTHO05D004412 4.3e-68 261.5 152 80.3
BolC4t28284H Brassica oleracea HOM05D003761 ORTHO05D004412 2.8e-67 258.8 161 77.0
BcaB02g09051 Brassica carinata HOM05D003761 ORTHO05D004412 4.0e-66 255.0 162 75.9
BcaC02g07354 Brassica carinata HOM05D003761 ORTHO05D004412 4.0e-66 255.0 161 75.2
BcaB06g29129 Brassica carinata HOM05D003761 ORTHO05D004412 2.0e-65 252.7 148 81.1
Thhalv10001056m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 2.3e-50 202.6 164 68.9
Sp2g12340 Schrenkiella parvula HOM05D003761 ORTHO05D004412 1.7e-48 196.4 163 63.8
BolC7t43669H Brassica oleracea HOM05D003761 ORTHO05D004412 1.4e-47 193.4 155 65.8
BcaC06g31357 Brassica carinata HOM05D003761 ORTHO05D004412 5.4e-47 191.4 163 62.6
A06p44900 Brassica napus HOM05D003761 ORTHO05D004412 7.1e-47 191.0 164 62.2
C07p31280 Brassica napus HOM05D003761 ORTHO05D004412 7.1e-47 191.0 169 59.8
BraA06t27361Z Brassica rapa HOM05D003761 ORTHO05D004412 1.2e-46 190.3 150 65.3
AT5G47635 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 1.6e-46 189.9 146 67.8
BcaC04g21612 Brassica carinata HOM05D003761 ORTHO05D004412 1.6e-46 189.9 146 67.1
C09p29870 Brassica napus HOM05D003761 ORTHO05D004412 1.6e-46 189.9 146 67.1
A09p23140 Brassica napus HOM05D003761 ORTHO05D004412 1.3e-45 186.8 142 66.2
BraA09t37917Z Brassica rapa HOM05D003761 ORTHO05D004412 1.3e-45 186.8 142 66.2
CARHR173680 Cardamine hirsuta HOM05D003761 ORTHO05D004412 3.0e-45 185.7 157 65.0
Aa31LG9G5380 Aethionema arabicum HOM05D003761 ORTHO05D004412 5.1e-45 184.9 152 63.2
Carub.0008s0015 Capsella rubella HOM05D003761 ORTHO05D004412 8.6e-45 184.1 150 65.3
AL8G10320 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 2.5e-44 182.6 150 64.0
Aa31LG5G19480 Aethionema arabicum HOM05D003761 ORTHO05D004412 5.6e-44 181.4 148 61.5
BcaB07g30768 Brassica carinata HOM05D003761 ORTHO05D004412 2.8e-43 179.1 140 65.7
C04p67800 Brassica napus HOM05D003761 ORTHO05D004412 7.6e-41 171.0 96 80.2
THA.LOC104806736 Tarenaya hassleriana HOM05D003761 ORTHO05D004412 4.6e-38 161.8 139 59.0
Thhalv10026465m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 2.3e-37 159.5 129 62.0
BcaC06g34236 Brassica carinata HOM05D003761 ORTHO05D004412 3.0e-37 159.1 150 58.0
BraA01t01941Z Brassica rapa HOM05D003761 ORTHO05D004412 1.6e-35 153.3 144 56.2
BcaNung03472 Brassica carinata HOM05D003761 ORTHO05D004412 4.7e-35 151.8 138 55.1
CARHR223820 Cardamine hirsuta HOM05D003761 ORTHO05D004412 8.1e-35 151.0 128 59.4
AL7G37500 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 1.8e-34 149.8 128 59.4
BcaC09g50449 Brassica carinata HOM05D003761 ORTHO05D004412 2.4e-34 149.4 138 57.2
C01p25300 Brassica napus HOM05D003761 ORTHO05D004412 2.4e-34 149.4 138 57.2
BolC1t02480H Brassica oleracea HOM05D003761 ORTHO05D004412 2.4e-34 149.4 138 57.2
AT4G17215 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 8.9e-34 147.5 133 57.9
Carub.0007s2420 Capsella rubella HOM05D003761 ORTHO05D004412 8.9e-34 147.5 133 57.1
BcaC06g33549 Brassica carinata HOM05D003761 ORTHO05D004412 1.5e-33 146.7 129 59.7
A03p50350 Brassica napus HOM05D003761 ORTHO05D004412 1.5e-33 146.7 129 59.7
C07p48660 Brassica napus HOM05D003761 ORTHO05D004412 1.5e-33 146.7 129 59.7
BolC7t45373H Brassica oleracea HOM05D003761 ORTHO05D004412 1.5e-33 146.7 129 59.7
BraA03t14124Z Brassica rapa HOM05D003761 ORTHO05D004412 1.5e-33 146.7 129 59.7
Sp7g16980 Schrenkiella parvula HOM05D003761 ORTHO05D004412 9.9e-33 144.1 129 57.4
BolC9t55850H Brassica oleracea HOM05D003761 ORTHO05D004412 2.4e-31 139.4 96 72.9
BcaNung03474 Brassica carinata HOM05D003761 ORTHO05D004412 5.4e-31 138.3 129 55.8
BcaNung00112 Brassica carinata HOM05D003761 ORTHO05D004412 4.6e-30 135.2 126 54.0
THA.LOC104798379 Tarenaya hassleriana HOM05D003761 ORTHO05D004412 2.3e-29 132.9 134 51.5
CANSAT56G1869 Cannabis sativa HOM05D003761 ORTHO05D004412 1.2e-25 120.6 132 47.7
Thecc.06G240300 Theobroma cacao HOM05D003761 ORTHO05D004412 3.8e-24 115.5 150 43.3
EL10Ac8g20260 Beta vulgaris HOM05D003761 ORTHO05D004412 4.9e-24 115.2 134 45.5
Lj2C256G8 Lonicera japonica HOM05D003761 ORTHO05D004412 4.9e-24 115.2 142 44.4
COL.COLO4_31936 Corchorus olitorius HOM05D003761 ORTHO05D004412 8.4e-24 114.4 137 45.3
Duzib192G0597 Durio zibethinus HOM05D003761 ORTHO05D004412 2.4e-23 112.8 147 41.5
QL05p067831 Quercus lobata HOM05D003761 ORTHO05D004412 2.4e-23 112.8 147 43.5
Sc24g0000400 Simmondsia chinensis HOM05D003761 ORTHO05D004412 4.2e-23 112.1 133 47.4
Actinidia39257 Actinidia chinensis HOM05D003761 ORTHO05D004412 5.4e-23 111.7 137 43.1
Cpa.g.sc27.232 Carica papaya HOM05D003761 ORTHO05D004412 5.4e-23 111.7 150 38.7
Ciclev10016770m.g Citrus clementina HOM05D003761 ORTHO05D004412 7.1e-23 111.3 165 37.6
Hma1.2p1_1175F.1_g263990 Hydrangea macrophylla HOM05D003761 ORTHO05D004412 9.3e-23 110.9 142 40.8
Lalb_Chr13g0304361 Lupinus albus HOM05D003761 ORTHO05D004412 9.3e-23 110.9 135 46.7
ECA248G3040 Erigeron canadensis HOM05D003761 ORTHO05D004412 1.6e-22 110.2 128 46.1
vmacro03612 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 1.6e-22 110.2 144 41.7
Actinidia11903 Actinidia chinensis HOM05D003761 ORTHO05D004412 2.1e-22 109.8 141 42.6
MSTRG.14590 Avicennia marina HOM05D003761 ORTHO05D004412 2.7e-22 109.4 141 45.4
Lsat_1_v5_gn_1_130120 Lactuca sativa HOM05D003761 ORTHO05D004412 6.0e-22 108.2 137 44.5
Rhsim13G0141000 Rhododendron simsii HOM05D003761 ORTHO05D004412 6.0e-22 108.2 138 42.8
Aqoxy4G01086 Aquilegia oxysepala HOM05D003761 ORTHO05D004412 7.9e-22 107.8 151 41.7
Lsat_1_v5_gn_7_13080 Lactuca sativa HOM05D003761 ORTHO05D004412 7.9e-22 107.8 143 41.3
Oeu057021.1 Olea europaea HOM05D003761 ORTHO05D004412 7.9e-22 107.8 135 43.7
SGA_v2.0_scaffold186G40120 Striga asiatica HOM05D003761 ORTHO05D004412 7.9e-22 107.8 134 45.5
AUR62021816 Chenopodium quinoa HOM05D003761 ORTHO05D004412 1.0e-21 107.5 140 45.7
Haze_07014 Corylus avellana HOM05D003761 ORTHO05D004412 3.9e-21 105.5 144 42.4
Migut.H01629 Erythranthe guttata HOM05D003761 ORTHO05D004412 5.1e-21 105.1 133 45.9
Nn1g07502 Nelumbo nucifera HOM05D003761 ORTHO05D004412 5.1e-21 105.1 142 40.1
Oeu025960.1 Olea europaea HOM05D003761 ORTHO05D004412 8.7e-21 104.4 133 41.4
Gohir.D06G217400 Gossypium hirsutum HOM05D003761 ORTHO05D004412 1.1e-20 104.0 148 39.9
Cfa000041 Carpinus fangiana HOM05D003761 ORTHO05D004412 1.5e-20 103.6 144 41.7
GSVIVG01005138001 Vitis vinifera HOM05D003761 ORTHO05D004412 1.5e-20 103.6 148 39.2
CSS0009294 Camellia sinensis var. sinensis HOM05D003761 ORTHO05D004412 1.9e-20 103.2 139 41.0
CSS0045719 Camellia sinensis var. sinensis HOM05D003761 ORTHO05D004412 1.9e-20 103.2 139 41.0
AUR62012843 Chenopodium quinoa HOM05D003761 ORTHO05D004412 1.9e-20 103.2 141 44.0
TAR626G0912 Trochodendron aralioides HOM05D003761 ORTHO05D004412 1.9e-20 103.2 138 44.2
PGR042G2523 Punica granatum HOM05D003761 ORTHO05D004412 3.3e-20 102.4 140 42.1
CiPaw.09G108600 Carya illinoinensis HOM05D003761 ORTHO05D004412 4.3e-20 102.1 146 41.8
Gohir.A06G204100 Gossypium hirsutum HOM05D003761 ORTHO05D004412 4.3e-20 102.1 145 40.0
Potri.006G005600 Populus trichocarpa HOM05D003761 ORTHO05D004412 4.3e-20 102.1 136 41.2
Cc09_g00350 Coffea canephora HOM05D003761 ORTHO05D004412 5.6e-20 101.7 158 39.2
Prupe.4G004300 Prunus persica HOM05D003761 ORTHO05D004412 5.6e-20 101.7 153 37.9
Sabra06G0004500 Salix brachista HOM05D003761 ORTHO05D004412 5.6e-20 101.7 137 39.4
Gorai.010G248800 Gossypium raimondii HOM05D003761 ORTHO05D004412 7.4e-20 101.3 148 39.2
PGSC0003DMG400013274 Solanum tuberosum HOM05D003761 ORTHO05D004412 7.4e-20 101.3 139 39.6
Actinidia02285 Actinidia chinensis HOM05D000829 ORTHO05D000690 9.6e-20 100.9 123 43.1
Aa31LG2G12410 Aethionema arabicum HOM05D003761 ORTHO05D004412 9.6e-20 100.9 142 41.5
CsaV3_1G015780 Cucumis sativus L. HOM05D003761 ORTHO05D004412 9.6e-20 100.9 150 40.7
CsaV3_UNG065500 Cucumis sativus L. HOM05D003761 ORTHO05D004412 9.6e-20 100.9 150 40.7
Dinv15342 Davidia involucrata HOM05D003761 ORTHO05D004412 9.6e-20 100.9 129 42.6
Lj6g0023004 Lotus japonicus HOM05D003761 ORTHO05D004412 9.6e-20 100.9 143 38.5
Lalb_Chr15g0088211 Lupinus albus HOM05D003761 ORTHO05D004412 9.6e-20 100.9 152 40.1
Oeu002779.1 Olea europaea HOM05D003761 ORTHO05D004412 1.3e-19 100.5 134 44.0
DCAR_030834 Daucus carota HOM05D003761 ORTHO05D004412 1.6e-19 100.1 153 41.2
PGSC0003DMG400013298 Solanum tuberosum HOM05D003761 ORTHO05D004412 1.6e-19 100.1 135 45.2
Manes.09G083000 Manihot esculenta HOM05D003761 ORTHO05D004412 2.1e-19 99.8 139 43.2
CAN.G1186.30 Capsicum annuum HOM05D003761 ORTHO05D004412 2.8e-19 99.4 143 40.6
Eucgr.E03855 Eucalyptus grandis HOM05D003761 ORTHO05D004412 2.8e-19 99.4 139 42.4
Sed0021615 Sechium edule HOM05D003761 ORTHO05D004412 2.8e-19 99.4 150 40.0
Sopen11g007440 Solanum pennellii HOM05D003761 ORTHO05D004412 2.8e-19 99.4 134 44.0
SGA_v2.0_scaffold49G18223 Striga asiatica HOM05D003761 ORTHO05D004412 2.8e-19 99.4 135 42.2
FAN25G2178 Fragaria x ananassa HOM05D003761 ORTHO05D004412 3.6e-19 99.0 148 41.9
Solyc11g012705.2 Solanum lycopersicum HOM05D003761 ORTHO05D004412 3.6e-19 99.0 134 44.0
SGA_v2.0_scaffold7G03701 Striga asiatica HOM05D003761 ORTHO05D004412 4.8e-19 98.6 135 43.0
Atru.chr1.2273 Acer truncatum HOM05D003761 ORTHO05D004412 6.2e-19 98.2 147 38.8
Eucgr.L00155 Eucalyptus grandis HOM05D003761 ORTHO05D004412 6.2e-19 98.2 158 39.2
Glyma.17G005900 Glycine max HOM05D003761 ORTHO05D004412 6.2e-19 98.2 139 42.4
MBI18_g42884_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 6.2e-19 98.2 145 39.3
Sopen11g006960 Solanum pennellii HOM05D003761 ORTHO05D004412 6.2e-19 98.2 139 38.8
FvH4_3g00370 Fragaria vesca HOM05D003761 ORTHO05D004412 8.1e-19 97.8 146 41.1
SalBow8G1906 Salvia bowleyana HOM05D003761 ORTHO05D004412 8.1e-19 97.8 145 42.1
MELO3C025526.2 Cucumis melo HOM05D003761 ORTHO05D004412 1.1e-18 97.4 140 40.7
HanXRQChr15g0470241 Helianthus annuus HOM05D003761 ORTHO05D004412 1.1e-18 97.4 146 40.4
Potri.016G006200 Populus trichocarpa HOM05D003761 ORTHO05D004412 1.4e-18 97.1 134 40.3
Solyc11g012170.1 Solanum lycopersicum HOM05D003761 ORTHO05D004412 1.4e-18 97.1 139 38.8
MD10G1338600 Malus domestica HOM05D003761 ORTHO05D004412 1.8e-18 96.7 159 39.0
Peaxi162Scf00442g00073 Petunia axillaris HOM05D003761 ORTHO05D004412 1.8e-18 96.7 138 42.8
arahy.Tifrunner.gnm1.ann1.UZ71G8 Arachis hypogaea HOM05D003761 ORTHO05D004412 2.4e-18 96.3 138 40.6
vmacro03611 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 2.4e-18 96.3 138 39.1
vmacro23224 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 2.4e-18 96.3 138 39.1
MSTRG.7132 Avicennia marina HOM05D003761 ORTHO05D004412 3.1e-18 95.9 137 42.3
MD05G1360900 Malus domestica HOM05D003761 ORTHO05D004412 3.1e-18 95.9 157 36.3
Sed0014180 Sechium edule HOM05D003761 ORTHO05D004412 3.1e-18 95.9 149 38.9
CAN.G1156.14 Capsicum annuum HOM05D003761 ORTHO05D004412 4.0e-18 95.5 134 41.0
FAN21G2431 Fragaria x ananassa HOM05D003761 ORTHO05D004412 4.0e-18 95.5 144 40.3
Lj4g0001357 Lotus japonicus HOM05D003761 ORTHO05D004412 4.0e-18 95.5 146 40.4
Nitab4.5_0000143g0280 Nicotiana tabacum HOM05D003761 ORTHO05D004412 4.0e-18 95.5 131 41.2
arahy.Tifrunner.gnm1.ann1.YY2BB8 Arachis hypogaea HOM05D003761 ORTHO05D004412 5.3e-18 95.1 139 41.0
PSO675G1588 Papaver somniferum HOM05D003761 ORTHO05D004412 5.3e-18 95.1 133 39.8
ClCG01G010750 Citrullus lanatus HOM05D003761 ORTHO05D004412 6.9e-18 94.7 151 39.1
Eucgr.L00154 Eucalyptus grandis HOM05D003761 ORTHO05D004412 6.9e-18 94.7 152 39.5
CDE10G1059 Ceratophyllum demersum HOM05D003761 ORTHO05D004412 9.0e-18 94.4 142 37.3
HanXRQChr01g0003591 Helianthus annuus HOM05D003761 ORTHO05D004412 9.0e-18 94.4 140 37.9
PSO541G3650 Papaver somniferum HOM05D003761 ORTHO05D004412 9.0e-18 94.4 133 39.8
Peaxi162Scf00558g00515 Petunia axillaris HOM05D003761 ORTHO05D004412 9.0e-18 94.4 144 41.0
MBI18_g27019_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 1.5e-17 93.6 139 38.1
Oeu025400.1 Olea europaea HOM05D003761 ORTHO05D004412 1.5e-17 93.6 147 36.7
TWI38G1412 Tripterygium wilfordii HOM05D003761 ORTHO05D004412 1.5e-17 93.6 160 36.9
Psat4g002880 Pisum sativum HOM05D003761 ORTHO05D004412 2.0e-17 93.2 147 41.5
TWI38G2030 Tripterygium wilfordii HOM05D003761 ORTHO05D004412 2.0e-17 93.2 148 37.8
Phvul.003G086700 Phaseolus vulgaris HOM05D003761 ORTHO05D004412 2.6e-17 92.8 133 41.4
MSTRG.13107 Avicennia marina HOM05D003761 ORTHO05D004412 4.5e-17 92.0 136 39.7
Nitab4.5_0001198g0070 Nicotiana tabacum HOM05D003761 ORTHO05D004412 5.8e-17 91.7 122 43.4
VMungo1215G0779 Vigna mungo HOM05D003761 ORTHO05D004412 5.8e-17 91.7 133 41.4
Ah.09g233900 Amaranthus hybridus HOM05D003761 ORTHO05D004412 7.6e-17 91.3 138 40.6
Ca_20995_v3 Cicer arietinum L. HOM05D003761 ORTHO05D004412 7.6e-17 91.3 139 42.4
Os10g0208600 Oryza sativa ssp. japonica HOM05D003761 ORTHO05D004412 7.6e-17 91.3 145 38.6
Medtr4g133932 Medicago truncatula HOM05D003761 ORTHO05D004412 3.8e-16 89.0 148 39.9
MBI19_g14888_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 4.9e-16 88.6 117 41.9
HPP92_024932 Vanilla planifolia HOM05D003761 ORTHO05D004412 8.4e-16 87.8 136 38.2
HPP92_024936 Vanilla planifolia HOM05D003761 ORTHO05D004412 8.4e-16 87.8 136 38.2
TPR.G5987 Trifolium pratense HOM05D003761 ORTHO05D004412 1.1e-15 87.4 139 41.7
PGR004G2813 Punica granatum HOM05D003761 ORTHO05D004412 1.4e-15 87.0 147 37.4
unitig_52.g17560 Utricularia gibba HOM05D003761 ORTHO05D004412 4.2e-15 85.5 156 35.9
Hma1.2p1_1175F.1_g263980 Hydrangea macrophylla HOM05D003761 ORTHO05D004412 5.5e-15 85.1 91 46.2
Sabra16G0011000 Salix brachista HOM05D003761 ORTHO05D004412 5.5e-15 85.1 133 39.1
Os10g0206500 Oryza sativa ssp. japonica HOM05D003761 ORTHO05D004412 3.5e-14 82.4 140 37.9
Sc05g0009870 Simmondsia chinensis HOM05D003761 ORTHO05D004412 6.7e-13 78.2 100 46.0
Migut.M01442 Erythranthe guttata HOM05D003761 ORTHO05D004412 8.7e-13 77.8 140 38.6
Cpa.g.sc27.234 Carica papaya HOM05D003761 ORTHO05D004412 2.5e-12 76.3 101 37.6
Zm00001eb050510 Zea mays HOM05D003761 ORTHO05D004412 4.3e-12 75.5 145 32.4
ATR0827G170 Amborella trichopoda HOM05D003761 ORTHO05D004412 2.4e-10 69.7 111 34.2
C02p48790 Brassica napus HOM05D003761 ORTHO05D039658 4.5e-09 65.5 94 43.6
BcaC03g16979 Brassica carinata HOM05D003761 ORTHO05D039658 2.2e-08 63.2 66 53.0


User provided reference genes

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