Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR134310 Cardamine hirsuta HOM05D004294 ORTHO05D004899 1.5e-92 342.8 175 100.0
AL4G36820 Arabidopsis lyrata HOM05D004294 ORTHO05D004899 3.2e-82 308.5 172 93.0
AT2G39445 Arabidopsis thaliana HOM05D004294 ORTHO05D004899 5.1e-80 301.2 171 91.2
Carub.0004s2151 Capsella rubella HOM05D004294 ORTHO05D004899 2.5e-79 298.9 171 90.1
Thhalv10017327m.g Eutrema salsugineum HOM05D004294 ORTHO05D004899 1.7e-78 296.2 169 90.5
BcaC02g12072 Brassica carinata HOM05D004294 ORTHO05D004899 1.1e-77 293.5 172 90.1
BolC4t22431H Brassica oleracea HOM05D004294 ORTHO05D004899 1.1e-77 293.5 172 90.1
Carub.0004s0710 Capsella rubella HOM05D004294 ORTHO05D004899 3.1e-77 292.0 172 87.8
C04p08280 Brassica napus HOM05D004294 ORTHO05D004899 5.3e-77 291.2 172 89.5
A05p06950 Brassica napus HOM05D004294 ORTHO05D004899 2.0e-76 289.3 172 88.4
BraA05t19659Z Brassica rapa HOM05D004294 ORTHO05D004899 5.9e-76 287.7 171 88.3
Sp4g21750 Schrenkiella parvula HOM05D004294 ORTHO05D004899 3.8e-75 285.0 172 86.0
BcaB02g09119 Brassica carinata HOM05D004294 ORTHO05D004899 5.0e-75 284.6 171 87.1
Sp4g08170 Schrenkiella parvula HOM05D004294 ORTHO05D004899 9.4e-74 280.4 168 86.3
Aa31LG5G20160 Aethionema arabicum HOM05D004294 ORTHO05D004899 3.0e-72 275.4 172 83.1
Aa31LG5G20440 Aethionema arabicum HOM05D004294 ORTHO05D004899 8.8e-72 273.9 170 82.9
BcaB06g29086 Brassica carinata HOM05D004294 ORTHO05D004899 1.3e-67 260.0 174 80.5
C04p67330 Brassica napus HOM05D004294 ORTHO05D004899 5.5e-66 254.6 171 78.9
BolC4t28228H Brassica oleracea HOM05D004294 ORTHO05D004899 5.5e-66 254.6 171 78.9
BraA04t18462Z Brassica rapa HOM05D004294 ORTHO05D004899 2.4e-61 239.2 164 77.4
BcaC02g07404 Brassica carinata HOM05D004294 ORTHO05D004899 1.5e-55 219.9 172 70.9
CiPaw.14G015600 Carya illinoinensis HOM05D004294 ORTHO05D004899 7.7e-52 207.6 169 63.9
Glyma.13G219700 Glycine max HOM05D004294 ORTHO05D004899 7.7e-52 207.6 170 61.8
Rhsim08G0211800 Rhododendron simsii HOM05D004294 ORTHO05D004899 7.7e-52 207.6 168 64.9
Cpa.g.sc52.62 Carica papaya HOM05D004294 ORTHO05D004899 1.3e-51 206.8 168 63.1
CANSAT35G1700 Cannabis sativa HOM05D004294 ORTHO05D004899 1.7e-51 206.5 168 64.9
unitig_0.g1581 Utricularia gibba HOM05D002708 ORTHO05D003516 1.7e-51 206.5 173 58.4
Cfa022163 Carpinus fangiana HOM05D004294 ORTHO05D004899 2.2e-51 206.1 172 62.2
Medtr2g084540 Medicago truncatula HOM05D004294 ORTHO05D004899 2.2e-51 206.1 170 62.4
Haze_02916 Corylus avellana HOM05D004294 ORTHO05D004899 3.8e-51 205.3 169 63.3
Potri.002G134800 Populus trichocarpa HOM05D004294 ORTHO05D004899 3.8e-51 205.3 167 64.1
TPR.G32380 Trifolium pratense HOM05D004294 ORTHO05D004899 3.8e-51 205.3 170 60.6
Medtr2g022850 Medicago truncatula HOM05D004294 ORTHO05D004899 5.0e-51 204.9 170 61.8
vmacro19009 Vaccinium macrocarpon HOM05D004294 ORTHO05D004899 5.0e-51 204.9 168 63.1
GSVIVG01037228001 Vitis vinifera HOM05D004294 ORTHO05D004899 6.5e-51 204.5 168 62.5
VMungo0540G0738 Vigna mungo HOM05D004294 ORTHO05D004899 8.5e-51 204.1 170 61.8
Lj3g0025421 Lotus japonicus HOM05D004294 ORTHO05D004899 1.5e-50 203.4 170 61.8
Sabra02G0105000 Salix brachista HOM05D004294 ORTHO05D004899 1.9e-50 203.0 168 63.1
CSS0014990 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 3.2e-50 202.2 168 63.7
Dinv43581 Davidia involucrata HOM05D004294 ORTHO05D004899 3.2e-50 202.2 169 63.3
Glyma.15G092700 Glycine max HOM05D004294 ORTHO05D004899 3.2e-50 202.2 172 61.0
Phvul.006G166400 Phaseolus vulgaris HOM05D004294 ORTHO05D004899 3.2e-50 202.2 168 61.9
Psat2g182760 Pisum sativum HOM05D004294 ORTHO05D004899 4.2e-50 201.8 170 61.2
SGA_v2.0_scaffold45G17247 Striga asiatica HOM05D004294 ORTHO05D004899 4.2e-50 201.8 170 61.8
TWI75G0011 Tripterygium wilfordii HOM05D004294 ORTHO05D004899 5.5e-50 201.4 168 62.5
BcaB02g09120 Brassica carinata HOM05D004294 ORTHO05D004899 7.2e-50 201.1 115 88.7
Eucgr.E01714 Eucalyptus grandis HOM05D004294 ORTHO05D004899 9.4e-50 200.7 168 62.5
Actinidia15750 Actinidia chinensis HOM05D004294 ORTHO05D004899 1.2e-49 200.3 168 62.5
Ca_01696_v3 Cicer arietinum L. HOM05D004294 ORTHO05D004899 1.2e-49 200.3 168 62.5
Lj3g0019907 Lotus japonicus HOM05D004294 ORTHO05D004899 1.2e-49 200.3 171 63.7
GSVIVG01026772001 Vitis vinifera HOM05D004294 ORTHO05D004899 1.6e-49 199.9 168 61.9
A04p30460 Brassica napus HOM05D004294 ORTHO05D004899 2.1e-49 199.5 130 78.5
AL2G15030 Arabidopsis lyrata HOM05D004294 ORTHO05D004899 3.6e-49 198.7 169 64.5
Ah.09g230610 Amaranthus hybridus HOM05D004294 ORTHO05D004899 6.1e-49 198.0 167 60.5
Hma1.2p1_1440F.1_g283530 Hydrangea macrophylla HOM05D004294 ORTHO05D004899 8.0e-49 197.6 168 62.5
Manes.02G122400 Manihot esculenta HOM05D004294 ORTHO05D004899 1.0e-48 197.2 169 60.4
Hma1.2p1_0973F.1_g243000 Hydrangea macrophylla HOM05D004294 ORTHO05D004899 1.4e-48 196.8 168 61.9
Cc02_g25750 Coffea canephora HOM05D004294 ORTHO05D004899 1.8e-48 196.4 168 61.3
Lalb_Chr14g0374351 Lupinus albus HOM05D004294 ORTHO05D004899 2.3e-48 196.1 170 59.4
AT1G61280 Arabidopsis thaliana HOM05D004294 ORTHO05D004899 3.0e-48 195.7 128 78.1
CiPaw.13G021200 Carya illinoinensis HOM05D004294 ORTHO05D004899 4.0e-48 195.3 169 60.4
Atru.chr5.34 Acer truncatum HOM05D004294 ORTHO05D004899 5.2e-48 194.9 167 59.3
Atru.chr5.64 Acer truncatum HOM05D004294 ORTHO05D004899 1.2e-47 193.7 167 59.9
Migut.K00778 Erythranthe guttata HOM05D004294 ORTHO05D004899 1.2e-47 193.7 168 58.9
SalBow5G4501 Salvia bowleyana HOM05D004294 ORTHO05D004899 1.2e-47 193.7 170 60.6
Thecc.04G104900 Theobroma cacao HOM05D004294 ORTHO05D004899 1.2e-47 193.7 172 59.9
MSTRG.20657 Avicennia marina HOM05D004294 ORTHO05D004899 2.0e-47 193.0 169 59.2
ClCG05G002810 Citrullus lanatus HOM05D004294 ORTHO05D004899 4.4e-47 191.8 168 60.7
arahy.Tifrunner.gnm1.ann1.ZAL8K4 Arachis hypogaea HOM05D004294 ORTHO05D004899 7.5e-47 191.0 170 59.4
AUR62021407 Chenopodium quinoa HOM05D004294 ORTHO05D004899 1.3e-46 190.3 167 58.7
TAR629G2021 Trochodendron aralioides HOM05D004294 ORTHO05D004899 1.3e-46 190.3 168 60.1
Gohir.D08G177200 Gossypium hirsutum HOM05D004294 ORTHO05D004899 2.8e-46 189.1 173 59.5
Gohir.A08G156800 Gossypium hirsutum HOM05D004294 ORTHO05D004899 3.7e-46 188.7 173 59.5
Gorai.004G185600 Gossypium raimondii HOM05D004294 ORTHO05D004899 3.7e-46 188.7 173 59.0
AUR62010895 Chenopodium quinoa HOM05D004294 ORTHO05D004899 6.3e-46 188.0 167 58.7
AUR62021410 Chenopodium quinoa HOM05D004294 ORTHO05D004899 6.3e-46 188.0 167 59.3
QL04p025854 Quercus lobata HOM05D004294 ORTHO05D004899 6.3e-46 188.0 169 58.6
Sed0018514 Sechium edule HOM05D004294 ORTHO05D004899 1.4e-45 186.8 169 59.8
MD02G1225800 Malus domestica HOM05D004294 ORTHO05D004899 1.8e-45 186.4 167 58.1
MD07G1088000 Malus domestica HOM05D004294 ORTHO05D004899 1.8e-45 186.4 167 58.1
CAN.G756.9 Capsicum annuum HOM05D004294 ORTHO05D004899 5.4e-45 184.9 167 56.9
CDE12G0039 Ceratophyllum demersum HOM05D004294 ORTHO05D004899 9.1e-45 184.1 164 59.1
Solyc01g150146.1 Solanum lycopersicum HOM05D004294 ORTHO05D004899 1.2e-44 183.7 167 57.5
Sopen01g035370 Solanum pennellii HOM05D004294 ORTHO05D004899 1.2e-44 183.7 167 57.5
CsaV3_3G010340 Cucumis sativus L. HOM05D004294 ORTHO05D004899 1.6e-44 183.3 169 58.6
Nitab4.5_0004088g0110 Nicotiana tabacum HOM05D004294 ORTHO05D004899 3.5e-44 182.2 167 56.9
HanXRQChr17g0545891 Helianthus annuus HOM05D004294 ORTHO05D004899 4.5e-44 181.8 167 56.3
Peaxi162Scf00102g01053 Petunia axillaris HOM05D004294 ORTHO05D004899 1.3e-43 180.3 167 56.3
PGSC0003DMG400001711 Solanum tuberosum HOM05D004294 ORTHO05D004899 1.7e-43 179.9 167 56.9
PSO675G3209 Papaver somniferum HOM05D004294 ORTHO05D004899 2.9e-43 179.1 168 57.1
Sed0004229 Sechium edule HOM05D004294 ORTHO05D004899 2.9e-43 179.1 174 55.2
TAR371G1121 Trochodendron aralioides HOM05D004294 ORTHO05D004899 2.9e-43 179.1 162 58.0
PSO782G1693 Papaver somniferum HOM05D004294 ORTHO05D004899 3.8e-43 178.7 171 55.6
Prupe.2G114700 Prunus persica HOM05D004294 ORTHO05D004899 3.8e-43 178.7 160 57.5
FvH4_5g29260 Fragaria vesca HOM05D004294 ORTHO05D004899 5.0e-43 178.3 168 56.0
PSO063G7341 Papaver somniferum HOM05D004294 ORTHO05D004899 5.0e-43 178.3 171 55.6
MELO3C031598.2 Cucumis melo HOM05D004294 ORTHO05D004899 6.6e-43 177.9 169 57.4
ECA234G1071 Erigeron canadensis HOM05D004294 ORTHO05D004899 1.1e-42 177.2 167 55.7
DCAR_029527 Daucus carota HOM05D004294 ORTHO05D004899 1.5e-42 176.8 168 53.6
arahy.Tifrunner.gnm1.ann1.E5WW1G Arachis hypogaea HOM05D005360 ORTHO05D004899 1.9e-42 176.4 162 57.4
ECA234G1894 Erigeron canadensis HOM05D004294 ORTHO05D004899 2.5e-42 176.0 167 55.7
FvH4_7g08700 Fragaria vesca HOM05D004294 ORTHO05D004899 2.5e-42 176.0 168 56.0
FAN06G3965 Fragaria x ananassa HOM05D004294 ORTHO05D004899 2.5e-42 176.0 168 56.0
Lsat_1_v5_gn_4_36140 Lactuca sativa HOM05D004294 ORTHO05D004899 2.5e-42 176.0 166 56.6
FAN18G1057 Fragaria x ananassa HOM05D004294 ORTHO05D004899 3.3e-42 175.6 168 55.4
RcHm_v2.0_Chr5g0055501 Rosa chinensis HOM05D004294 ORTHO05D004899 3.3e-42 175.6 167 55.1
Thhalv10024054m.g Eutrema salsugineum HOM05D004294 ORTHO05D004899 5.6e-42 174.9 131 67.2
Nitab4.5_0006873g0030 Nicotiana tabacum HOM05D004294 ORTHO05D004899 5.6e-42 174.9 169 55.0
CARHR051330 Cardamine hirsuta HOM05D004294 ORTHO05D004899 9.5e-42 174.1 123 74.8
FAN03G1356 Fragaria x ananassa HOM05D004294 ORTHO05D004899 1.6e-41 173.3 168 55.4
RcHm_v2.0_Chr1g0343921 Rosa chinensis HOM05D004294 ORTHO05D004899 1.6e-41 173.3 168 56.0
PSO541G2071 Papaver somniferum HOM05D004294 ORTHO05D004899 2.1e-41 172.9 168 56.0
Carub.0002s0388 Capsella rubella HOM05D004294 ORTHO05D004899 3.0e-40 169.1 177 57.6
ATR0626G354 Amborella trichopoda HOM05D004294 ORTHO05D004899 4.0e-40 168.7 167 50.9
HanXRQChr10g0302581 Helianthus annuus HOM05D004294 ORTHO05D004899 4.0e-40 168.7 167 53.9
Duzib138G0823 Durio zibethinus HOM05D004294 ORTHO05D004899 2.0e-39 166.4 131 62.6
HPP92_020692 Vanilla planifolia HOM05D004294 ORTHO05D004899 2.6e-39 166.0 155 55.5
Gohir.D08G177066 Gossypium hirsutum HOM05D004294 ORTHO05D004899 3.7e-38 162.2 170 54.7
Zm00001eb097750 Zea mays HOM05D004294 ORTHO05D004899 3.7e-38 162.2 161 50.9
Ciclev10022425m.g Citrus clementina HOM05D004294 ORTHO05D004899 1.8e-37 159.8 128 64.8
Potri.014G043400 Populus trichocarpa HOM05D004294 ORTHO05D004899 6.6e-35 151.4 133 57.9
Gorai.004G185000 Gossypium raimondii HOM05D004294 ORTHO05D004899 8.6e-35 151.0 168 52.4
MELO3C031600.2 Cucumis melo HOM05D004294 ORTHO05D004899 3.1e-32 142.5 130 58.5
Nn6g34994 Nelumbo nucifera HOM05D004294 ORTHO05D004899 3.1e-32 142.5 129 58.1
Hund09105 Selenicereus undatus HOM05D004294 ORTHO05D004899 3.1e-32 142.5 127 58.3
Pp3c4_15230 Physcomitrium patens HOM05D004294 ORTHO05D004899 5.2e-32 141.7 165 45.5
unitig_0.g1328 Utricularia gibba HOM05D004294 ORTHO05D004899 2.9e-30 136.0 173 45.7
EL10Ac8g18381 Beta vulgaris HOM05D004294 ORTHO05D004899 3.7e-30 135.6 167 50.3
CSS0001349 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 1.4e-29 133.7 168 49.4
CSS0013781 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 9.2e-29 131.0 168 48.8
CSS0040335 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 2.7e-28 129.4 168 48.8
Migut.N01709 Erythranthe guttata HOM05D004294 ORTHO05D004899 4.6e-28 128.6 159 47.2
AagrBONN_evm.TU.Sc2ySwM_362.275 Anthoceros agrestis HOM05D004294 ORTHO05D004899 1.0e-27 127.5 162 45.1
AagrBONN_evm.TU.Sc2ySwM_368.1700 Anthoceros agrestis HOM05D004294 ORTHO05D004899 3.9e-27 125.6 164 43.9
Aqoxy3G02531 Aquilegia oxysepala HOM05D004294 ORTHO05D004899 6.6e-27 124.8 101 57.4
SalBow4G1179 Salvia bowleyana HOM05D004294 ORTHO05D004899 8.1e-25 117.9 145 43.4
CBR_g12382 Chara braunii HOM05D004294 ORTHO05D004899 1.2e-23 114.0 135 43.0
Mapoly0030s0033 Marchantia polymorpha HOM05D004294 ORTHO05D004899 2.0e-23 113.2 142 41.5
MSTRG.4966 Avicennia marina HOM05D004294 ORTHO05D004899 1.1e-21 107.5 150 43.3
SMO232G0013 Selaginella moellendorffii HOM05D004294 ORTHO05D004899 1.4e-21 107.1 123 41.5
MELO3C031599.2 Cucumis melo HOM05D004294 ORTHO05D004899 2.4e-21 106.3 91 59.3
TPR.G23032 Trifolium pratense HOM05D004294 ORTHO05D004899 7.8e-20 101.3 66 66.7
COL.COLO4_08476 Corchorus olitorius HOM05D004294 ORTHO05D004899 6.6e-19 98.2 81 61.7
Lsat_1_v5_gn_3_35920 Lactuca sativa HOM05D004294 ORTHO05D004899 2.0e-15 86.7 63 60.3
Zm00001eb212340 Zea mays HOM05D004294 ORTHO05D004899 4.9e-14 82.0 91 47.3
Os10g0569100 Oryza sativa ssp. japonica HOM05D004294 ORTHO05D004899 2.4e-13 79.7 97 41.2
Sp4g08150 Schrenkiella parvula HOM05D000096 ORTHO05D000045 4.6e-12 75.5 44 86.4
Os03g0640300 Oryza sativa ssp. japonica HOM05D004294 ORTHO05D004899 1.0e-11 74.3 83 48.2
SEGI_31162 Sequoiadendron giganteum HOM05D004294 ORTHO05D004899 1.7e-11 73.6 63 49.2
TPR.G20146 Trifolium pratense HOM05D004294 ORTHO05D004899 8.6e-11 71.2 69 55.1
PGSC0003DMG400001683 Solanum tuberosum HOM05D004294 ORTHO05D004899 9.6e-10 67.8 167 33.5
PGSC0003DMG400034273 Solanum tuberosum HOM05D004294 ORTHO05D004899 1.4e-08 63.9 63 60.3
Migut.K01222 Erythranthe guttata HOM05D004294 ORTHO05D004899 2.4e-08 63.2 64 56.2
PGSC0003DMG400001681 Solanum tuberosum HOM05D004294 ORTHO05D004899 2.4e-08 63.2 68 57.4
Cre01.g055424 Chlamydomonas reinhardtii HOM05D004294 ORTHO05D004899 2.6e-07 59.7 80 36.2
Cfa025555 Carpinus fangiana HOM05D004294 ORTHO05D124452 1.3e-06 57.4 89 37.1
ECA234G1984 Erigeron canadensis HOM05D004294 ORTHO05D004899 1.3e-06 57.4 66 50.0
Actinidia18927 Actinidia chinensis HOM05D004294 ORTHO05D004899 2.2e-06 56.6 64 53.1
SMO241G0031 Selaginella moellendorffii HOM05D004294 ORTHO05D004899 2.2e-06 56.6 63 39.7
Cfa019943 Carpinus fangiana HOM05D004294 ORTHO05D004899 3.8e-06 55.8 63 49.2
Cfa001861 Carpinus fangiana HOM05D004294 ORTHO05D004899 6.4e-06 55.1 59 50.8
Cfa018800 Carpinus fangiana HOM05D004294 ORTHO05D004899 6.4e-06 55.1 59 50.8


User provided reference genes

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