Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR133870 Cardamine hirsuta HOM05D007775 ORTHO05D009858 1.5e-172 609.4 300 100.0
Sp4g21450 Schrenkiella parvula HOM05D007775 ORTHO05D009858 7.3e-127 457.6 302 78.5
AT2G39100 Arabidopsis thaliana HOM05D007775 ORTHO05D009858 1.7e-123 446.4 299 76.3
Carub.0004s2115 Capsella rubella HOM05D007775 ORTHO05D009858 3.0e-120 435.6 280 76.1
Thhalv10017000m.g Eutrema salsugineum HOM05D007775 ORTHO05D009858 5.8e-116 421.4 271 79.0
Aa31LG5G20500 Aethionema arabicum HOM05D007775 ORTHO05D009858 4.2e-114 415.2 304 70.4
C04p67030 Brassica napus HOM05D007775 ORTHO05D009858 1.0e-112 410.6 295 72.5
BraA04t18439Z Brassica rapa HOM05D007775 ORTHO05D009858 6.7e-112 407.9 298 72.1
BolC4t28205H Brassica oleracea HOM05D007775 ORTHO05D009858 1.5e-111 406.8 297 72.1
THA.LOC104820248 Tarenaya hassleriana HOM05D007775 ORTHO05D009858 2.0e-92 343.2 288 61.5
A04p29770 Brassica napus HOM05D007775 ORTHO05D009858 1.0e-91 340.9 254 69.7
AL4G36400 Arabidopsis lyrata HOM05D007775 ORTHO05D009858 5.7e-87 325.1 205 81.0
QL06p007731 Quercus lobata HOM05D007775 ORTHO05D009858 1.8e-77 293.5 282 54.3
Ciclev10005542m.g Citrus clementina HOM05D007775 ORTHO05D009858 2.4e-77 293.1 280 53.2
BcaC02g12905 Brassica carinata HOM05D007775 ORTHO05D009858 5.3e-77 292.0 275 61.1
Thecc.04G279800 Theobroma cacao HOM05D007775 ORTHO05D009858 2.2e-75 286.6 303 50.8
COL.COLO4_13909 Corchorus olitorius HOM05D007775 ORTHO05D009858 8.5e-75 284.6 301 49.8
Potri.008G215200 Populus trichocarpa HOM05D007775 ORTHO05D009858 7.2e-74 281.6 297 51.2
TAR362G1316 Trochodendron aralioides HOM05D007775 ORTHO05D009858 1.2e-73 280.8 285 52.3
Cfa015361 Carpinus fangiana HOM05D007775 ORTHO05D009858 1.6e-73 280.4 277 51.3
Gohir.D10G168200 Gossypium hirsutum HOM05D007775 ORTHO05D009858 1.0e-72 277.7 282 48.6
AL92U10060 Arabidopsis lyrata HOM05D007775 ORTHO05D009858 5.2e-72 275.4 176 80.7
CiPaw.02G085200 Carya illinoinensis HOM05D007775 ORTHO05D009858 3.4e-71 272.7 280 52.1
Dinv38311 Davidia involucrata HOM05D007775 ORTHO05D009858 3.4e-71 272.7 295 47.5
Eucgr.B01278 Eucalyptus grandis HOM05D007775 ORTHO05D009858 3.4e-71 272.7 304 50.0
Gorai.011G187800 Gossypium raimondii HOM05D007775 ORTHO05D009858 5.7e-71 271.9 285 47.7
TWI09G0118 Tripterygium wilfordii HOM05D007775 ORTHO05D009858 7.5e-71 271.6 307 50.8
Prupe.1G140100 Prunus persica HOM05D007775 ORTHO05D009858 9.8e-71 271.2 278 51.8
PGR031G0649 Punica granatum HOM05D007775 ORTHO05D009858 2.2e-70 270.0 281 49.8
RcHm_v2.0_Chr4g0421471 Rosa chinensis HOM05D007775 ORTHO05D009858 1.4e-69 267.3 284 50.0
Sabra08G0155600 Salix brachista HOM05D007775 ORTHO05D009858 9.1e-69 264.6 301 49.2
Atru.chr4.2786 Acer truncatum HOM05D007775 ORTHO05D009858 4.5e-68 262.3 283 49.5
MD13G1171700 Malus domestica HOM05D007775 ORTHO05D009858 4.5e-68 262.3 274 51.5
Duzib151G1205 Durio zibethinus HOM05D007775 ORTHO05D009858 1.3e-67 260.8 270 47.4
FvH4_4g17570 Fragaria vesca HOM05D007775 ORTHO05D009858 1.7e-67 260.4 291 47.1
FAN07G2931 Fragaria x ananassa HOM05D007775 ORTHO05D009858 2.2e-67 260.0 275 49.1
Actinidia40242 Actinidia chinensis HOM05D007775 ORTHO05D009858 3.8e-67 259.2 291 47.8
Cpa.g.sc197.12 Carica papaya HOM05D007775 ORTHO05D009858 1.1e-66 257.7 263 50.6
ClCG06G005300 Citrullus lanatus HOM05D007775 ORTHO05D009858 5.5e-66 255.4 275 47.6
Nn3g16301 Nelumbo nucifera HOM05D007775 ORTHO05D009858 5.5e-66 255.4 274 50.0
Rhsim04G0218300 Rhododendron simsii HOM05D007775 ORTHO05D009858 2.7e-65 253.1 278 48.6
MELO3C021348.2 Cucumis melo HOM05D007775 ORTHO05D009858 1.4e-64 250.8 275 48.4
Gohir.A10G161700 Gossypium hirsutum HOM05D007775 ORTHO05D009858 5.2e-64 248.8 261 48.3
GSVIVG01017782001 Vitis vinifera HOM05D007775 ORTHO05D009858 1.5e-63 247.3 265 46.8
CsaV3_6G017340 Cucumis sativus L. HOM05D007775 ORTHO05D009858 4.4e-63 245.7 275 46.2
MBI19_g01943_MAGBIO Magnolia biondii HOM05D007775 ORTHO05D009858 4.4e-63 245.7 303 44.6
Lsat_1_v5_gn_5_52881 Lactuca sativa HOM05D007775 ORTHO05D009858 1.1e-61 241.1 277 45.8
Cc03_g02150 Coffea canephora HOM05D007775 ORTHO05D009858 3.5e-60 236.1 275 45.1
PGSC0003DMG400030783 Solanum tuberosum HOM05D007775 ORTHO05D009858 7.7e-60 235.0 271 47.2
arahy.Tifrunner.gnm1.ann1.J8QG6N Arachis hypogaea HOM05D007775 ORTHO05D009858 1.0e-59 234.6 292 44.9
arahy.Tifrunner.gnm1.ann1.KJPE0P Arachis hypogaea HOM05D007775 ORTHO05D009858 1.0e-59 234.6 305 43.3
Solyc06g054580.4 Solanum lycopersicum HOM05D007775 ORTHO05D009858 1.0e-59 234.6 273 45.4
CANSAT78G0244 Cannabis sativa HOM05D007775 ORTHO05D009858 3.8e-59 232.6 279 47.3
FAN12G2546 Fragaria x ananassa HOM05D007775 ORTHO05D009858 1.1e-58 231.1 273 45.1
Sopen06g019650 Solanum pennellii HOM05D007775 ORTHO05D009858 1.5e-58 230.7 273 45.1
Oeu021116.1 Olea europaea HOM05D007775 ORTHO05D009858 6.1e-57 225.3 264 46.6
Manes.15G015200 Manihot esculenta HOM05D007775 ORTHO05D009858 1.0e-56 224.6 275 49.5
Lj6A671T60 Lonicera japonica HOM05D007775 ORTHO05D009858 3.0e-56 223.0 263 45.6
Sed0017003 Sechium edule HOM05D007775 ORTHO05D009858 3.0e-56 223.0 266 45.5
Ah.13g074550 Amaranthus hybridus HOM05D007775 ORTHO05D009858 2.4e-53 213.4 267 43.4
HanXRQChr03g0080871 Helianthus annuus HOM05D007775 ORTHO05D009858 3.2e-53 213.0 303 41.3
Lalb_Chr13g0303771 Lupinus albus HOM05D007775 ORTHO05D009858 4.1e-53 212.6 299 42.8
CAN.G256.16 Capsicum annuum HOM05D007775 ORTHO05D009858 2.7e-52 209.9 276 43.5
Nitab4.5_0001459g0060 Nicotiana tabacum HOM05D007775 ORTHO05D009858 1.7e-51 207.2 250 45.2
Nitab4.5_0002148g0040 Nicotiana tabacum HOM05D007775 ORTHO05D009858 1.7e-51 207.2 253 45.5
PSO210G6602 Papaver somniferum HOM05D007775 ORTHO05D009858 6.2e-49 198.7 316 39.6
DCAR_024553 Daucus carota HOM05D007775 ORTHO05D009858 6.4e-46 188.7 225 43.1
Peaxi162Scf00033g01324 Petunia axillaris HOM05D007775 ORTHO05D009858 9.2e-45 184.9 267 40.8
ECA240G4119 Erigeron canadensis HOM05D007775 ORTHO05D009858 6.2e-41 172.2 250 41.2
Aqoxy2G03074 Aquilegia oxysepala HOM05D007775 ORTHO05D009858 2.2e-38 163.7 222 42.3
FAN12G2785 Fragaria x ananassa HOM05D007775 ORTHO05D009858 5.4e-37 159.1 193 47.2
ATR0706G202 Amborella trichopoda HOM05D007775 ORTHO05D009858 2.0e-31 140.6 213 39.4
Sc06g0007440 Simmondsia chinensis HOM05D007775 ORTHO05D009858 2.0e-31 140.6 249 34.9
Pp3c21_11960 Physcomitrium patens HOM05D007775 ORTHO05D009858 2.2e-30 137.1 309 31.1
SMO147G0036 Selaginella moellendorffii HOM05D007775 ORTHO05D009858 2.4e-29 133.7 324 29.6
Haze_01245 Corylus avellana HOM05D007775 ORTHO05D009858 3.8e-22 109.8 87 55.2
vmacro08108 Vaccinium macrocarpon HOM05D007775 ORTHO05D009858 6.4e-22 109.0 91 54.9
QL06p007898 Quercus lobata HOM05D007775 ORTHO05D009858 1.7e-19 100.9 120 48.3
SEGI_15450 Sequoiadendron giganteum HOM05D007775 ORTHO05D009858 2.1e-17 94.0 125 41.6
CSS0035717 Camellia sinensis var. sinensis HOM05D007775 ORTHO05D009858 1.8e-16 90.9 95 48.4
MSTRG.10078 Avicennia marina HOM05D007775 ORTHO05D009858 6.9e-16 89.0 99 41.4
CSS0050081 Camellia sinensis var. sinensis HOM05D007775 ORTHO05D009858 9.0e-16 88.6 76 53.9
CSS0036115 Camellia sinensis var. sinensis HOM05D007775 ORTHO05D009858 5.8e-15 85.9 95 47.4
Prupe.8G004900 Prunus persica HOM05D007775 ORTHO05D009858 1.7e-14 84.3 85 49.4
COL.COLO4_10908 Corchorus olitorius HOM05D007775 ORTHO05D009858 4.6e-12 76.3 64 54.7
BolC5t34854H Brassica oleracea HOM05D006625 ORTHO05D008060 8.1e-09 65.5 266 22.2
Cpa.g.sc48.33 Carica papaya HOM05D006625 ORTHO05D008060 2.4e-08 63.9 286 24.1
Peaxi162Scf00037g00234 Petunia axillaris HOM05D006625 ORTHO05D008060 2.4e-08 63.9 260 22.7
BcaC05g30013 Brassica carinata HOM05D006625 ORTHO05D008060 3.1e-08 63.5 267 22.8
BolC3t17028H Brassica oleracea HOM05D006625 ORTHO05D008060 2.0e-07 60.8 274 22.3
AL3G15690 Arabidopsis lyrata HOM05D006625 ORTHO05D008060 4.5e-07 59.7 264 20.1
A05p42330 Brassica napus HOM05D006625 ORTHO05D008060 4.5e-07 59.7 104 34.6
BraA05t23018Z Brassica rapa HOM05D006625 ORTHO05D008060 4.5e-07 59.7 104 34.6
BcaC05g30142 Brassica carinata HOM05D006625 ORTHO05D008060 5.8e-07 59.3 94 38.3
SalBow3G1529 Salvia bowleyana HOM05D006857 ORTHO05D008679 5.8e-07 59.3 255 23.9
FAN14G5649 Fragaria x ananassa HOM05D001310 ORTHO05D008060 7.6e-07 58.9 266 22.9
C05p61940 Brassica napus HOM05D006625 ORTHO05D008060 2.2e-06 57.4 104 33.7
Nitab4.5_0005388g0010 Nicotiana tabacum HOM05D006625 ORTHO05D008060 2.2e-06 57.4 259 23.6
ECA238G1542 Erigeron canadensis HOM05D000187 ORTHO05D005916 4.9e-06 56.2 45 44.4
TAR362G1087 Trochodendron aralioides HOM05D006625 ORTHO05D008060 4.9e-06 56.2 276 22.8
CiPaw.07G016100 Carya illinoinensis HOM05D006625 ORTHO05D008060 8.4e-06 55.5 260 23.1
FAN09G2049 Fragaria x ananassa HOM05D001310 ORTHO05D008060 8.4e-06 55.5 258 22.9
Sp3g04100 Schrenkiella parvula HOM05D006625 ORTHO05D008060 8.4e-06 55.5 266 20.3


User provided reference genes

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