Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR133370 Cardamine hirsuta HOM05D007159 ORTHO05D009068 1.6e-112 409.5 209 100.0
Carub.0004s2069 Capsella rubella HOM05D007159 ORTHO05D009068 4.5e-83 311.6 220 78.6
AT2G38695 Arabidopsis thaliana HOM05D007159 ORTHO05D009068 6.6e-82 307.8 220 78.2
AL4G35990 Arabidopsis lyrata HOM05D007159 ORTHO05D009068 2.5e-81 305.8 217 76.5
Sp4g21050 Schrenkiella parvula HOM05D007159 ORTHO05D009068 1.3e-77 293.5 217 76.0
C03p25530 Brassica napus HOM05D007159 ORTHO05D009068 8.3e-77 290.8 214 76.2
A03p21540 Brassica napus HOM05D007159 ORTHO05D009068 1.6e-75 286.6 213 75.1
BraA03t11390Z Brassica rapa HOM05D007159 ORTHO05D009068 1.7e-69 266.5 209 70.8
Thhalv10017229m.g Eutrema salsugineum HOM05D007159 ORTHO05D009068 2.2e-69 266.2 161 87.6
BolC3t14940H Brassica oleracea HOM05D007159 ORTHO05D009068 2.4e-68 262.7 209 70.3
BcaNung04831 Brassica carinata HOM05D007159 ORTHO05D009068 7.0e-68 261.2 173 82.7
THA.LOC104824199 Tarenaya hassleriana HOM05D007159 ORTHO05D009068 1.8e-63 246.5 225 62.2
Aa31sc689G20 Aethionema arabicum HOM05D007159 ORTHO05D009068 9.8e-62 240.7 170 72.4
Aa31sc26G60 Aethionema arabicum HOM05D007159 ORTHO05D009068 4.3e-57 225.3 245 55.5
COL.COLO4_32863 Corchorus olitorius HOM05D007159 ORTHO05D009068 1.2e-54 217.2 140 75.0
Ciclev10002366m.g Citrus clementina HOM05D007159 ORTHO05D009068 2.6e-54 216.1 200 60.0
Duzib128G1689 Durio zibethinus HOM05D007159 ORTHO05D009068 7.5e-54 214.5 145 72.4
GSVIVG01004028001 Vitis vinifera HOM05D007159 ORTHO05D009068 7.5e-54 214.5 214 58.4
GSVIVG01012409001 Vitis vinifera HOM05D007159 ORTHO05D009068 9.9e-54 214.2 138 76.8
GSVIVG01004020001 Vitis vinifera HOM05D007159 ORTHO05D009068 2.9e-53 212.6 127 81.1
GSVIVG01012445001 Vitis vinifera HOM05D007159 ORTHO05D009068 3.7e-53 212.2 138 76.1
CiPaw.13G018000 Carya illinoinensis HOM05D007159 ORTHO05D009068 4.9e-53 211.8 139 74.1
QL04p022349 Quercus lobata HOM05D007159 ORTHO05D009068 8.3e-53 211.1 157 70.1
MD02G1270600 Malus domestica HOM05D007159 ORTHO05D009068 1.4e-52 210.3 210 56.7
Glyma.04G126100 Glycine max HOM05D007159 ORTHO05D009068 1.9e-52 209.9 160 66.2
Potri.003G190101 Populus trichocarpa HOM05D007159 ORTHO05D009068 1.9e-52 209.9 160 70.6
Manes.11G009800 Manihot esculenta HOM05D007159 ORTHO05D009068 9.2e-52 207.6 215 57.2
Thecc.10G133500 Theobroma cacao HOM05D007159 ORTHO05D009068 9.2e-52 207.6 145 68.3
Phvul.005G013300 Phaseolus vulgaris HOM05D007159 ORTHO05D009068 1.2e-51 207.2 160 65.6
Medtr3g011770 Medicago truncatula HOM05D007159 ORTHO05D009068 1.6e-51 206.8 196 59.2
TPR.G30403 Trifolium pratense HOM05D007159 ORTHO05D009068 1.6e-51 206.8 180 63.3
Gohir.A10G191800 Gossypium hirsutum HOM05D007159 ORTHO05D009068 2.1e-51 206.5 146 71.2
TWI63G1065 Tripterygium wilfordii HOM05D007159 ORTHO05D009068 3.5e-51 205.7 199 58.3
arahy.Tifrunner.gnm1.ann1.XLH660 Arachis hypogaea HOM05D007159 ORTHO05D009068 4.6e-51 205.3 138 73.9
Lj3g0023531 Lotus japonicus HOM05D007159 ORTHO05D009068 6.0e-51 204.9 171 62.0
Gorai.011G223700 Gossypium raimondii HOM05D007159 ORTHO05D009068 1.3e-50 203.8 146 70.5
RcHm_v2.0_Chr3g0462781 Rosa chinensis HOM05D007159 ORTHO05D009068 1.3e-50 203.8 203 56.7
VMungo1080G1031 Vigna mungo HOM05D007159 ORTHO05D009068 1.7e-50 203.4 152 67.8
Gohir.D10G199566 Gossypium hirsutum HOM05D007159 ORTHO05D009068 5.1e-50 201.8 124 79.0
SalBow5G2583 Salvia bowleyana HOM05D007159 ORTHO05D009068 6.6e-50 201.4 127 77.2
Lalb_Chr18g0048161 Lupinus albus HOM05D007159 ORTHO05D009068 1.5e-49 200.3 146 69.9
FvH4_6g11251 Fragaria vesca HOM05D007159 ORTHO05D009068 1.9e-49 199.9 207 57.0
PSO339G3610 Papaver somniferum HOM05D007159 ORTHO05D009068 1.9e-49 199.9 158 65.2
FAN14G5227 Fragaria x ananassa HOM05D007159 ORTHO05D009068 2.5e-49 199.5 159 66.7
PGSC0003DMG402002094 Solanum tuberosum HOM05D007159 ORTHO05D009068 2.5e-49 199.5 154 64.9
ATR0598G156 Amborella trichopoda HOM05D007159 ORTHO05D009068 4.3e-49 198.7 156 65.4
Eucgr.G03186 Eucalyptus grandis HOM05D007159 ORTHO05D009068 7.3e-49 198.0 158 65.8
FAN02G0787 Fragaria x ananassa HOM05D007159 ORTHO05D009068 7.3e-49 198.0 160 65.6
FAN14G2984 Fragaria x ananassa HOM05D007159 ORTHO05D009068 9.5e-49 197.6 207 56.5
TAR623G0509 Trochodendron aralioides HOM05D007159 ORTHO05D009068 2.1e-48 196.4 170 62.4
Actinidia35758 Actinidia chinensis HOM05D007159 ORTHO05D009068 2.8e-48 196.1 176 59.1
Cc00_g21840 Coffea canephora HOM05D007159 ORTHO05D009068 2.8e-48 196.1 136 69.1
Nn2g14588 Nelumbo nucifera HOM05D007159 ORTHO05D009068 2.8e-48 196.1 147 68.0
Psat5g224840 Pisum sativum HOM05D007159 ORTHO05D009068 3.6e-48 195.7 179 58.7
MSTRG.20491 Avicennia marina HOM05D007159 ORTHO05D009068 8.1e-48 194.5 138 71.7
Migut.B01174 Erythranthe guttata HOM05D007159 ORTHO05D009068 8.1e-48 194.5 143 68.5
PGR031G3393 Punica granatum HOM05D007159 ORTHO05D009068 1.1e-47 194.1 174 62.1
SGA_v2.0_scaffold141G35535 Striga asiatica HOM05D007159 ORTHO05D009068 1.4e-47 193.7 175 59.4
Solyc06g061130.4 Solanum lycopersicum HOM05D007159 ORTHO05D009068 1.8e-47 193.4 209 52.2
AUR62035525 Chenopodium quinoa HOM05D007159 ORTHO05D009068 2.4e-47 193.0 199 56.3
Rhsim08G0052600 Rhododendron simsii HOM05D007159 ORTHO05D009068 3.1e-47 192.6 192 54.2
Hund06845 Selenicereus undatus HOM05D007159 ORTHO05D009068 3.1e-47 192.6 181 60.2
Sopen06g021330 Solanum pennellii HOM05D007159 ORTHO05D009068 3.1e-47 192.6 215 52.6
Zm00001eb314250 Zea mays HOM05D007159 ORTHO05D009068 1.5e-46 190.3 148 64.2
SEGI_36712 Sequoiadendron giganteum HOM05D007159 ORTHO05D009068 2.2e-45 186.4 125 72.0
HPP92_004369 Vanilla planifolia HOM05D007159 ORTHO05D009068 2.9e-45 186.0 127 69.3
Aqoxy1G00016 Aquilegia oxysepala HOM05D007159 ORTHO05D009068 3.8e-45 185.7 203 53.2
Nitab4.5_0006066g0020 Nicotiana tabacum HOM05D007159 ORTHO05D009068 5.4e-44 181.8 130 65.4
Nitab4.5_0000256g0440 Nicotiana tabacum HOM05D007159 ORTHO05D009068 9.2e-44 181.0 208 50.0
EL10Ac4g08838 Beta vulgaris HOM05D007159 ORTHO05D009068 3.5e-43 179.1 115 75.7
Lsat_1_v5_gn_7_31321 Lactuca sativa HOM05D007159 ORTHO05D009068 4.6e-43 178.7 117 71.8
ClCG11G012910 Citrullus lanatus HOM05D007159 ORTHO05D009068 3.0e-42 176.0 120 72.5
CsaV3_5G029340 Cucumis sativus L. HOM05D007159 ORTHO05D009068 1.9e-41 173.3 197 52.8
AagrBONN_evm.TU.Sc2ySwM_344.1718 Anthoceros agrestis HOM05D007159 ORTHO05D009068 2.1e-40 169.9 163 54.0
ECA236G3649 Erigeron canadensis HOM05D007159 ORTHO05D009068 7.6e-38 161.4 166 54.8
Mapoly0102s0032 Marchantia polymorpha HOM05D007159 ORTHO05D009068 7.6e-38 161.4 123 61.8
HanXRQChr15g0480981 Helianthus annuus HOM05D007159 ORTHO05D009068 2.2e-37 159.8 109 68.8
arahy.Tifrunner.gnm1.ann1.T46YUH Arachis hypogaea HOM05D007159 ORTHO05D009068 1.6e-35 153.7 147 56.5
SMO137G0134 Selaginella moellendorffii HOM05D007159 ORTHO05D009068 1.6e-35 153.7 124 59.7
Peaxi162Scf00615g00514 Petunia axillaris HOM05D007159 ORTHO05D009068 2.1e-35 153.3 92 80.4
Dinv23933 Davidia involucrata HOM05D007159 ORTHO05D009068 1.7e-34 150.2 106 70.8
DCAR_001925 Daucus carota HOM05D007159 ORTHO05D009068 3.9e-34 149.1 115 61.7
Actinidia39400 Actinidia chinensis HOM05D007159 ORTHO05D009068 1.5e-33 147.1 119 65.5
GSVIVG01012423001 Vitis vinifera HOM05D007159 ORTHO05D009068 4.8e-32 142.1 83 84.3
Aa31sc19G60 Aethionema arabicum HOM05D007159 ORTHO05D009068 1.1e-31 141.0 83 83.1
Ah.06g191300 Amaranthus hybridus HOM05D007159 ORTHO05D009068 1.8e-31 140.2 202 42.1
Sc09g0004690 Simmondsia chinensis HOM05D007159 ORTHO05D009068 4.0e-31 139.0 92 75.0
AUR62041642 Chenopodium quinoa HOM05D007159 ORTHO05D009068 4.5e-30 135.6 124 58.1
MELO3C034053.2 Cucumis melo HOM05D007159 ORTHO05D009068 5.8e-30 135.2 101 72.3
CBR_g8263 Chara braunii HOM05D007159 ORTHO05D009068 7.6e-30 134.8 127 52.8
GSVIVG01012347001 Vitis vinifera HOM05D007159 ORTHO05D009068 9.9e-30 134.4 113 63.7
FAN05G1155 Fragaria x ananassa HOM05D007159 ORTHO05D009068 1.0e-26 124.4 160 49.4
Prupe.2G049700 Prunus persica HOM05D007159 ORTHO05D009068 1.0e-26 124.4 106 60.4
GSVIVG01012437001 Vitis vinifera HOM05D007159 ORTHO05D009068 1.0e-26 124.4 138 52.9
Sed0014969 Sechium edule HOM05D007159 ORTHO05D009068 8.7e-26 121.3 93 66.7
Oeu058665.1 Olea europaea HOM05D007159 ORTHO05D009068 4.3e-25 119.0 71 78.9
unitig_749.g13795 Utricularia gibba HOM05D007159 ORTHO05D009068 1.2e-22 110.9 80 67.5
QL04p022306 Quercus lobata HOM05D007159 ORTHO05D009068 1.1e-20 104.4 92 59.8
FAN09G0838 Fragaria x ananassa HOM05D007159 ORTHO05D009068 2.7e-19 99.8 160 43.1
CANSAT78G1490 Cannabis sativa HOM05D007159 ORTHO05D009068 9.6e-17 91.3 128 44.5
Atru.chr12.1193 Acer truncatum HOM05D007159 ORTHO05D009068 1.3e-16 90.9 49 87.8
Sed0016161 Sechium edule HOM05D007159 ORTHO05D009068 2.4e-15 86.7 70 62.9
Glyma.06G312500 Glycine max HOM05D007159 ORTHO05D009068 3.1e-15 86.3 64 65.6
Haze_02958 Corylus avellana HOM05D007159 ORTHO05D009068 2.2e-13 80.1 40 92.5
PRCOL_00002415 Prasinoderma coloniale HOM05D007159 ORTHO05D009068 3.8e-13 79.3 124 39.5
MCO13G186 Micromonas commoda HOM05D007159 ORTHO05D009068 5.0e-13 79.0 123 36.6
Ciclev10012634m.g Citrus clementina HOM05D009116 ORTHO05D011299 4.6e-11 72.4 124 35.5
Rhsim03G0219300 Rhododendron simsii HOM05D009116 ORTHO05D011299 7.9e-11 71.6 203 32.5
MSTRG.26944 Avicennia marina HOM05D009116 ORTHO05D011299 1.0e-10 71.2 194 29.9
unitig_52.g17699 Utricularia gibba HOM05D009116 ORTHO05D011299 2.3e-10 70.1 117 34.2
Oeu038114.2 Olea europaea HOM05D002675 ORTHO05D003322 3.0e-10 69.7 112 35.7
Os04g0600100 Oryza sativa ssp. japonica HOM05D009116 ORTHO05D011299 3.0e-10 69.7 118 33.9
Migut.F00112 Erythranthe guttata HOM05D009116 ORTHO05D011299 3.9e-10 69.3 162 30.2
Eucgr.H00677 Eucalyptus grandis HOM05D009116 ORTHO05D011299 6.7e-10 68.6 157 31.8
COL.COLO4_34141 Corchorus olitorius HOM05D009116 ORTHO05D011299 1.1e-09 67.8 178 29.8
Nitab4.5_0000115g0230 Nicotiana tabacum HOM05D009116 ORTHO05D011299 1.5e-09 67.4 124 35.5
Nitab4.5_0003012g0090 Nicotiana tabacum HOM05D009116 ORTHO05D011299 2.5e-09 66.6 167 30.5
Hund27206 Selenicereus undatus HOM05D009116 ORTHO05D011299 7.4e-09 65.1 124 35.5
CDE02G3635 Ceratophyllum demersum HOM05D009116 ORTHO05D011299 1.3e-08 64.3 116 34.5
EL10Ac1g00288 Beta vulgaris HOM05D009116 ORTHO05D011299 1.6e-08 63.9 124 33.9
PGR031G3920 Punica granatum HOM05D009116 ORTHO05D011299 1.6e-08 63.9 160 30.6
Mapoly0065s0044 Marchantia polymorpha HOM05D009116 ORTHO05D011299 2.2e-08 63.5 122 34.4
CAN.G65.136 Capsicum annuum HOM05D009116 ORTHO05D011299 8.2e-08 61.6 124 32.3
Nn1g02040 Nelumbo nucifera HOM05D009116 ORTHO05D011299 8.2e-08 61.6 85 37.6
PGSC0003DMG400027028 Solanum tuberosum HOM05D009116 ORTHO05D011299 8.2e-08 61.6 124 33.1
Solyc06g072930.4 Solanum lycopersicum HOM05D009116 ORTHO05D011299 3.1e-07 59.7 186 27.4
Sopen06g029290 Solanum pennellii HOM05D009116 ORTHO05D011299 5.3e-07 58.9 199 27.6
AagrBONN_evm.TU.Sc2ySwM_368.2113 Anthoceros agrestis HOM05D009116 ORTHO05D011299 9.0e-07 58.2 117 31.6
CBR_g20118 Chara braunii HOM05D009116 ORTHO05D011299 2.0e-06 57.0 207 23.7
QL04p022221 Quercus lobata HOM05D000002 ORTHO05D000001 2.0e-06 57.0 82 46.3


User provided reference genes

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