Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR133260 Cardamine hirsuta HOM05D006830 ORTHO05D008119 1.3e-124 450.7 446 100.0
Thhalv10016585m.g Eutrema salsugineum HOM05D006830 ORTHO05D008119 6.1e-85 318.9 457 72.0
Sp4g20920 Schrenkiella parvula HOM05D006830 ORTHO05D008119 1.5e-83 314.3 436 73.6
Carub.0004s2057 Capsella rubella HOM05D006830 ORTHO05D008119 2.2e-79 300.4 500 65.6
AL4G35860 Arabidopsis lyrata HOM05D006830 ORTHO05D008119 5.3e-73 279.3 458 72.9
AT2G38580 Arabidopsis thaliana HOM05D006830 ORTHO05D008119 7.0e-73 278.9 457 72.2
A03p21400 Brassica napus HOM05D006830 ORTHO05D008119 1.2e-72 278.1 231 69.3
BraA03t11375Z Brassica rapa HOM05D006830 ORTHO05D008119 2.6e-72 276.9 231 68.8
C03p25270 Brassica napus HOM05D006830 ORTHO05D008119 3.5e-72 276.6 231 68.4
BolC3t14921H Brassica oleracea HOM05D006830 ORTHO05D008119 3.5e-72 276.6 231 68.4
BcaB01g03674 Brassica carinata HOM05D006830 ORTHO05D008119 4.4e-67 259.6 231 70.1
BcaC01g05528 Brassica carinata HOM05D006830 ORTHO05D008119 1.3e-66 258.1 223 66.8
C03p25310 Brassica napus HOM05D006830 ORTHO05D008119 6.3e-58 229.2 229 64.2
THA.LOC104806205 Tarenaya hassleriana HOM05D006830 ORTHO05D008119 2.6e-35 154.1 189 52.9
Cpa.g.sc72.63 Carica papaya HOM05D006830 ORTHO05D008119 2.0e-27 127.9 214 44.9
Potri.006G110400 Populus trichocarpa HOM05D006830 ORTHO05D008119 1.2e-24 118.6 237 38.0
Manes.08G169600 Manihot esculenta HOM05D006830 ORTHO05D008119 1.0e-23 115.5 233 38.6
Potri.016G139000 Populus trichocarpa HOM05D006830 ORTHO05D008119 1.3e-23 115.2 238 38.7
Sabra04G0154900 Salix brachista HOM05D006830 ORTHO05D008119 6.6e-23 112.8 251 41.0
QL07p031724 Quercus lobata HOM05D006830 ORTHO05D008119 2.5e-22 110.9 260 35.0
TWI77G0580 Tripterygium wilfordii HOM05D006830 ORTHO05D008119 2.8e-21 107.5 215 40.5
MD12G1191100 Malus domestica HOM05D006830 ORTHO05D008119 3.6e-21 107.1 212 38.2
Atru.chr8.80 Acer truncatum HOM05D006830 ORTHO05D008119 1.4e-20 105.1 189 44.4
Eucgr.A00784 Eucalyptus grandis HOM05D006830 ORTHO05D008119 5.2e-20 103.2 194 39.2
BolC3t14925H Brassica oleracea HOM05D006830 ORTHO05D008119 8.9e-20 102.4 102 69.6
Thecc.04G149300 Theobroma cacao HOM05D006830 ORTHO05D008119 2.0e-19 101.3 254 35.8
Gorai.006G236000 Gossypium raimondii HOM05D006830 ORTHO05D008119 5.8e-19 99.8 199 38.7
Gohir.D09G215500 Gossypium hirsutum HOM05D006830 ORTHO05D008119 7.6e-19 99.4 199 38.2
Sc20g0007150 Simmondsia chinensis HOM05D006830 ORTHO05D008119 1.3e-18 98.6 248 37.1
AUR62029792 Chenopodium quinoa HOM05D006830 ORTHO05D008119 2.2e-18 97.8 261 33.0
COL.COLO4_21252 Corchorus olitorius HOM05D006830 ORTHO05D008119 2.9e-18 97.4 213 39.4
TAR636G3618 Trochodendron aralioides HOM05D006830 ORTHO05D008119 2.9e-18 97.4 182 39.6
GSVIVG01025871001 Vitis vinifera HOM05D006830 ORTHO05D008119 2.9e-18 97.4 214 35.5
arahy.Tifrunner.gnm1.ann1.QV5EPW Arachis hypogaea HOM05D006830 ORTHO05D008119 3.7e-18 97.1 266 34.6
Prupe.6G296200 Prunus persica HOM05D006830 ORTHO05D008119 3.7e-18 97.1 210 36.2
AUR62006437 Chenopodium quinoa HOM05D006830 ORTHO05D008119 4.9e-18 96.7 261 33.0
PGR031G0539 Punica granatum HOM05D006830 ORTHO05D008119 6.4e-18 96.3 218 39.0
arahy.Tifrunner.gnm1.ann1.E2XN58 Arachis hypogaea HOM05D006830 ORTHO05D008119 8.4e-18 95.9 254 33.9
Hund19745 Selenicereus undatus HOM05D006830 ORTHO05D008119 1.1e-17 95.5 244 34.4
FvH4_6g09531 Fragaria vesca HOM05D006830 ORTHO05D008119 1.4e-17 95.1 218 37.2
FAN14G4211 Fragaria x ananassa HOM05D006830 ORTHO05D008119 1.4e-17 95.1 218 37.2
Lj1g0026994 Lotus japonicus HOM05D006830 ORTHO05D008119 1.4e-17 95.1 249 35.3
RcHm_v2.0_Chr3g0460131 Rosa chinensis HOM05D006830 ORTHO05D008119 1.9e-17 94.7 224 37.5
Duzib268G1795 Durio zibethinus HOM05D006830 ORTHO05D008119 2.4e-17 94.4 196 36.2
Glyma.09G273000 Glycine max HOM05D006830 ORTHO05D008119 2.4e-17 94.4 177 37.3
Gohir.A09G213672 Gossypium hirsutum HOM05D006830 ORTHO05D008119 3.2e-17 94.0 178 39.3
Lalb_Chr01g0023901 Lupinus albus HOM05D006830 ORTHO05D008119 4.1e-17 93.6 172 40.1
Duzib151G0823 Durio zibethinus HOM05D006830 ORTHO05D008119 5.4e-17 93.2 171 41.5
FAN09G0658 Fragaria x ananassa HOM05D006830 ORTHO05D008119 9.2e-17 92.4 270 31.9
Haze_21197 Corylus avellana HOM05D006830 ORTHO05D008119 2.1e-16 91.3 230 34.3
FAN05G1111 Fragaria x ananassa HOM05D006830 ORTHO05D008119 3.5e-16 90.5 218 35.8
Medtr7g073700 Medicago truncatula HOM05D006830 ORTHO05D008119 3.5e-16 90.5 231 34.2
Hund03691 Selenicereus undatus HOM05D006830 ORTHO05D008119 4.6e-16 90.1 244 32.4
Ah.08g209170 Amaranthus hybridus HOM05D006830 ORTHO05D008119 7.8e-16 89.4 253 33.6
FAN02G1118 Fragaria x ananassa HOM05D006830 ORTHO05D008119 1.7e-15 88.2 219 36.5
EL10Ac7g17129 Beta vulgaris HOM05D006830 ORTHO05D008119 2.3e-15 87.8 265 30.2
Ciclev10011645m.g Citrus clementina HOM05D006830 ORTHO05D008119 3.0e-15 87.4 203 38.9
Sed0004389 Sechium edule HOM05D006830 ORTHO05D008119 3.0e-15 87.4 188 38.3
Cfa017009 Carpinus fangiana HOM05D006830 ORTHO05D008119 3.9e-15 87.0 230 33.9
Nn5g26811 Nelumbo nucifera HOM05D006830 ORTHO05D008119 3.9e-15 87.0 215 36.7
MBI15_g32284_MAGBIO Magnolia biondii HOM05D006830 ORTHO05D008119 8.6e-15 85.9 200 35.0
Glyma.18G216100 Glycine max HOM05D006830 ORTHO05D008119 1.1e-14 85.5 184 37.0
TWI74G0093 Tripterygium wilfordii HOM05D006830 ORTHO05D008119 1.5e-14 85.1 214 35.0
Rhsim05G0232400 Rhododendron simsii HOM05D006830 ORTHO05D008119 4.3e-14 83.6 208 35.1
MELO3C009096.2 Cucumis melo HOM05D006830 ORTHO05D008119 5.6e-14 83.2 257 31.1
ECA248G1589 Erigeron canadensis HOM05D006830 ORTHO05D008119 1.2e-13 82.0 268 32.5
CsaV3_3G032990 Cucumis sativus L. HOM05D006830 ORTHO05D008119 4.7e-13 80.1 267 30.0
SGA_v2.0_scaffold85G26596 Striga asiatica HOM05D006830 ORTHO05D008119 1.8e-12 78.2 219 35.2
TPR.G24307 Trifolium pratense HOM05D006830 ORTHO05D008119 2.4e-12 77.8 181 36.5
Actinidia29020 Actinidia chinensis HOM05D006830 ORTHO05D008119 3.1e-12 77.4 268 30.6
HanXRQChr01g0000521 Helianthus annuus HOM05D006830 ORTHO05D008119 5.2e-12 76.6 211 33.6
Ca_07782_v3 Cicer arietinum L. HOM05D006830 ORTHO05D008119 8.9e-12 75.9 173 34.7
Lj2A57T75 Lonicera japonica HOM05D006830 ORTHO05D008119 1.5e-11 75.1 211 35.1
CSS0029082 Camellia sinensis var. sinensis HOM05D006830 ORTHO05D008119 2.6e-11 74.3 236 28.8
Aa31LG5G23390 Aethionema arabicum HOM05D006830 ORTHO05D008119 3.4e-11 73.9 112 45.5
Nitab4.5_0000048g0180 Nicotiana tabacum HOM05D006830 ORTHO05D008119 9.9e-11 72.4 209 31.1
Peaxi162Scf00732g00253 Petunia axillaris HOM05D006830 ORTHO05D008119 1.3e-10 72.0 203 35.5
Oeu030099.2 Olea europaea HOM05D006830 ORTHO05D008119 3.8e-10 70.5 218 31.2
Dinv16956 Davidia involucrata HOM05D006830 ORTHO05D008119 6.4e-10 69.7 255 29.4
Phvul.008G080600 Phaseolus vulgaris HOM05D006830 ORTHO05D008119 5.4e-09 66.6 160 34.4
Migut.J00020 Erythranthe guttata HOM05D006830 ORTHO05D008119 7.1e-09 66.2 254 28.7
VMungo1383G1745 Vigna mungo HOM05D006830 ORTHO05D008119 9.3e-09 65.9 160 33.8
Hma1.2p1_0537F.1_g174220 Hydrangea macrophylla HOM05D006830 ORTHO05D008119 1.2e-08 65.5 222 29.7
Solyc09g016940.4 Solanum lycopersicum HOM05D006830 ORTHO05D008119 2.1e-08 64.7 203 32.5
Sopen09g010200 Solanum pennellii HOM05D006830 ORTHO05D008119 2.7e-08 64.3 203 32.0
Oeu026939.4 Olea europaea HOM05D006830 ORTHO05D008119 3.5e-08 63.9 224 31.2
PSO339G2021 Papaver somniferum HOM05D006830 ORTHO05D008119 6.0e-08 63.2 68 51.5
CANSAT21G1452 Cannabis sativa HOM05D006830 ORTHO05D008119 1.0e-07 62.4 141 34.8
CANSAT60G0001 Cannabis sativa HOM05D006830 ORTHO05D008119 1.7e-07 61.6 141 34.8
DCAR_023967 Daucus carota HOM05D006830 ORTHO05D008119 1.7e-07 61.6 234 29.5
Nitab4.5_0001876g0080 Nicotiana tabacum HOM05D006830 ORTHO05D008119 8.7e-07 59.3 288 27.4
MSTRG.18932 Avicennia marina HOM05D006830 ORTHO05D008119 1.5e-06 58.5 287 27.2
vmacro20384 Vaccinium macrocarpon HOM05D006830 ORTHO05D008119 1.9e-06 58.2 181 36.5
CDE04G1359 Ceratophyllum demersum HOM05D006830 ORTHO05D008119 2.5e-06 57.8 188 29.3
Lsat_1_v5_gn_5_151701 Lactuca sativa HOM05D006830 ORTHO05D008119 3.3e-06 57.4 31 83.9
Cc06_g00270 Coffea canephora HOM05D002857 ORTHO05D008347 7.3e-06 56.2 117 38.5
HPP92_012541 Vanilla planifolia HOM05D006830 ORTHO05D008119 7.3e-06 56.2 30 86.7


User provided reference genes

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