Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR131610 Cardamine hirsuta HOM05D004499 ORTHO05D004928 1.1e-165 586.6 302 100.0
AT2G37100 Arabidopsis thaliana HOM05D004499 ORTHO05D004928 1.0e-112 410.6 307 77.2
Sp4g19420 Schrenkiella parvula HOM05D004499 ORTHO05D004928 1.4e-109 400.2 311 72.3
AL4G33450 Arabidopsis lyrata HOM05D004499 ORTHO05D004928 1.5e-108 396.7 312 75.0
Thhalv10016942m.g Eutrema salsugineum HOM05D004499 ORTHO05D004928 3.3e-103 379.0 330 67.9
BcaB02g09303 Brassica carinata HOM05D004499 ORTHO05D004928 3.0e-96 355.9 320 66.6
A05p08740 Brassica napus HOM05D004499 ORTHO05D004928 2.6e-95 352.8 315 67.3
Carub.0004s1899 Capsella rubella HOM05D004499 ORTHO05D004928 9.8e-95 350.9 308 66.9
BcaC02g11837 Brassica carinata HOM05D004499 ORTHO05D004928 1.3e-94 350.5 315 66.7
C04p10830 Brassica napus HOM05D004499 ORTHO05D004928 3.7e-94 349.0 315 66.3
BraA05t19842Z Brassica rapa HOM05D004499 ORTHO05D004928 3.7e-94 349.0 315 67.0
BolC4t22678H Brassica oleracea HOM05D004499 ORTHO05D004928 1.7e-91 340.1 314 65.3
THA.LOC104806496 Tarenaya hassleriana HOM05D004499 ORTHO05D004928 1.6e-81 307.0 325 58.5
Aa31LG5G22320 Aethionema arabicum HOM05D004499 ORTHO05D004928 9.8e-71 271.2 309 57.6
MD04G1102600 Malus domestica HOM05D004499 ORTHO05D004928 2.8e-49 199.9 320 45.3
CiPaw.09G179000 Carya illinoinensis HOM05D004499 ORTHO05D004928 1.1e-48 198.0 319 43.9
CiPaw.10G136800 Carya illinoinensis HOM05D004499 ORTHO05D004928 1.9e-45 187.2 325 42.8
Haze_20629 Corylus avellana HOM05D004499 ORTHO05D004928 2.4e-45 186.8 321 42.7
Prupe.6G240400 Prunus persica HOM05D004499 ORTHO05D004928 5.4e-45 185.7 331 41.7
Duzib093G0117 Durio zibethinus HOM05D004499 ORTHO05D004928 9.3e-45 184.9 331 43.5
QL07p045089 Quercus lobata HOM05D004499 ORTHO05D004928 1.2e-44 184.5 326 42.9
Cpa.g.sc174.12 Carica papaya HOM05D004499 ORTHO05D004928 2.7e-44 183.3 306 44.1
CANSAT80G2505 Cannabis sativa HOM05D004499 ORTHO05D004928 6.0e-44 182.2 348 41.4
Potri.016G086900 Populus trichocarpa HOM05D004499 ORTHO05D004928 3.0e-43 179.9 336 41.4
Potri.006G130500 Populus trichocarpa HOM05D004499 ORTHO05D004928 5.1e-43 179.1 331 42.9
TWI77G0862 Tripterygium wilfordii HOM05D004499 ORTHO05D004928 1.1e-42 177.9 324 40.1
Gorai.006G168200 Gossypium raimondii HOM05D004499 ORTHO05D004928 2.5e-42 176.8 313 43.8
Gohir.A09G151400 Gossypium hirsutum HOM05D004499 ORTHO05D004928 3.3e-42 176.4 313 43.8
Manes.09G078863 Manihot esculenta HOM05D004499 ORTHO05D004928 3.3e-42 176.4 327 42.2
Gohir.D09G147000 Gossypium hirsutum HOM05D004499 ORTHO05D004928 4.3e-42 176.0 313 43.8
Sabra06G0102500 Salix brachista HOM05D004499 ORTHO05D004928 4.3e-42 176.0 333 41.7
Cfa017521 Carpinus fangiana HOM05D004499 ORTHO05D004928 7.3e-42 175.3 325 40.3
Gorai.009G419500 Gossypium raimondii HOM05D004499 ORTHO05D004928 1.3e-41 174.5 321 43.6
Thecc.05G055800 Theobroma cacao HOM05D004499 ORTHO05D004928 2.1e-41 173.7 337 41.8
Sabra16G0093100 Salix brachista HOM05D004499 ORTHO05D004928 1.4e-40 171.0 335 41.8
ClCG10G020450 Citrullus lanatus HOM05D004499 ORTHO05D004928 2.4e-40 170.2 343 38.5
Dinv37265 Davidia involucrata HOM05D004499 ORTHO05D004928 5.3e-40 169.1 308 40.9
Gohir.A04G075800 Gossypium hirsutum HOM05D004499 ORTHO05D004928 2.6e-39 166.8 321 42.7
Atru.chr8.1895 Acer truncatum HOM05D004499 ORTHO05D004928 5.8e-39 165.6 235 48.9
RcHm_v2.0_Chr3g0469011 Rosa chinensis HOM05D004499 ORTHO05D004928 2.9e-38 163.3 339 37.2
TAR623G0879 Trochodendron aralioides HOM05D004499 ORTHO05D004928 8.4e-38 161.8 328 37.8
TWI53G1356 Tripterygium wilfordii HOM05D004499 ORTHO05D004928 3.5e-36 156.4 337 38.3
FAN05G3415 Fragaria x ananassa HOM05D004499 ORTHO05D004928 1.5e-34 151.0 341 37.5
Lj1g0000961 Lotus japonicus HOM05D004499 ORTHO05D004928 3.3e-34 149.8 321 39.6
Sed0022446 Sechium edule HOM05D004499 ORTHO05D004928 3.3e-34 149.8 331 37.2
CSS0037383 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 5.6e-34 149.1 313 38.0
MELO3C009326.2 Cucumis melo HOM05D004499 ORTHO05D004928 5.6e-34 149.1 337 36.5
Nn2g10698 Nelumbo nucifera HOM05D004499 ORTHO05D004928 9.6e-34 148.3 330 36.7
Glyma.19G179400 Glycine max HOM05D004499 ORTHO05D004928 1.3e-33 147.9 292 42.1
Lalb_Chr25g0289231 Lupinus albus HOM05D004499 ORTHO05D004928 1.3e-33 147.9 332 38.0
Manes.08G004109 Manihot esculenta HOM05D004499 ORTHO05D004928 1.3e-33 147.9 217 47.0
Manes.08G004117 Manihot esculenta HOM05D004499 ORTHO05D004928 1.3e-33 147.9 217 47.0
Manes.08G004127 Manihot esculenta HOM05D004499 ORTHO05D004928 1.3e-33 147.9 217 47.0
Manes.08G004131 Manihot esculenta HOM05D004499 ORTHO05D004928 1.3e-33 147.9 217 47.0
FAN09G3365 Fragaria x ananassa HOM05D004499 ORTHO05D004928 1.6e-33 147.5 338 36.4
Hma1.2p1_0111F.1_g054000 Hydrangea macrophylla HOM05D004499 ORTHO05D004928 1.6e-33 147.5 298 40.6
CSS0026303 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 2.8e-33 146.7 313 38.3
Manes.08G004126 Manihot esculenta HOM05D004499 ORTHO05D004928 3.6e-33 146.4 217 47.0
CARHR210240 Cardamine hirsuta HOM05D004499 ORTHO05D004928 4.8e-33 146.0 292 41.8
DCAR_014968 Daucus carota HOM05D004499 ORTHO05D004928 4.8e-33 146.0 293 39.6
FAN14G2800 Fragaria x ananassa HOM05D004499 ORTHO05D004928 8.1e-33 145.2 338 36.1
FvH4_6g15510 Fragaria vesca HOM05D004499 ORTHO05D004928 1.1e-32 144.8 336 36.3
Manes.08G004114 Manihot esculenta HOM05D004499 ORTHO05D004928 1.1e-32 144.8 217 47.0
Manes.08G004120 Manihot esculenta HOM05D004499 ORTHO05D004928 1.1e-32 144.8 217 47.0
Sed0006356 Sechium edule HOM05D004499 ORTHO05D004928 1.1e-32 144.8 323 37.8
MD12G1122400 Malus domestica HOM05D004499 ORTHO05D004928 1.8e-32 144.1 314 36.9
Sp6g39600 Schrenkiella parvula HOM05D004499 ORTHO05D004928 4.0e-32 142.9 300 44.3
CsaV3_3G035670 Cucumis sativus L. HOM05D004499 ORTHO05D004928 5.3e-32 142.5 349 37.0
Hma1.2p1_0350F.1_g132810 Hydrangea macrophylla HOM05D004499 ORTHO05D004928 9.0e-32 141.7 304 41.4
CSS0015121 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 1.2e-31 141.4 330 35.8
Glyma.03G178700 Glycine max HOM05D004499 ORTHO05D004928 1.5e-31 141.0 296 40.5
Glyma.10G050500 Glycine max HOM05D004499 ORTHO05D004928 1.5e-31 141.0 303 39.9
BcaC03g13031 Brassica carinata HOM05D004499 ORTHO05D004928 4.5e-31 139.4 291 41.6
C02p00790 Brassica napus HOM05D004499 ORTHO05D004928 4.5e-31 139.4 291 41.9
BolC2t06077H Brassica oleracea HOM05D004499 ORTHO05D004928 4.5e-31 139.4 291 41.9
FAN02G0924 Fragaria x ananassa HOM05D004499 ORTHO05D004928 4.5e-31 139.4 334 35.6
Phvul.007G164800 Phaseolus vulgaris HOM05D004499 ORTHO05D004928 4.5e-31 139.4 305 39.7
Thhalv10014228m.g Eutrema salsugineum HOM05D004499 ORTHO05D004928 5.8e-31 139.0 304 42.8
THA.LOC104826978 Tarenaya hassleriana HOM05D004499 ORTHO05D004928 7.6e-31 138.7 319 38.9
Phvul.001G175400 Phaseolus vulgaris HOM05D004499 ORTHO05D004928 2.9e-30 136.7 294 40.5
Rhsim04G0149000 Rhododendron simsii HOM05D004499 ORTHO05D004928 2.9e-30 136.7 333 36.0
Medtr7g100830 Medicago truncatula HOM05D004499 ORTHO05D004928 3.8e-30 136.3 316 37.0
AL6G12390 Arabidopsis lyrata HOM05D004499 ORTHO05D004928 6.4e-30 135.6 294 42.9
MSTRG.19143 Avicennia marina HOM05D004499 ORTHO05D004928 1.4e-29 134.4 334 38.0
BcaB05g21851 Brassica carinata HOM05D004499 ORTHO05D004928 1.9e-29 134.0 303 39.6
Manes.08G004906 Manihot esculenta HOM05D004499 ORTHO05D004928 1.9e-29 134.0 194 46.4
Manes.12G048251 Manihot esculenta HOM05D004499 ORTHO05D004928 3.2e-29 133.3 194 46.9
Lalb_Chr01g0018981 Lupinus albus HOM05D004499 ORTHO05D004928 7.1e-29 132.1 348 35.3
Nn2g13028 Nelumbo nucifera HOM05D004499 ORTHO05D004928 7.1e-29 132.1 342 33.6
THA.LOC104816329 Tarenaya hassleriana HOM05D004499 ORTHO05D004928 1.6e-28 131.0 327 36.7
VMungo1383G2757 Vigna mungo HOM05D004499 ORTHO05D004928 2.1e-28 130.6 306 39.5
Manes.05G197001 Manihot esculenta HOM05D004499 ORTHO05D004928 3.5e-28 129.8 194 45.9
Oeu029418.1 Olea europaea HOM05D004499 ORTHO05D004928 6.0e-28 129.0 303 35.3
PGR004G1454 Punica granatum HOM05D004499 ORTHO05D004928 1.0e-27 128.3 279 36.2
BraA02t04744Z Brassica rapa HOM05D004499 ORTHO05D004928 1.8e-27 127.5 297 39.1
Carub.0006s0191 Capsella rubella HOM05D004499 ORTHO05D004928 1.8e-27 127.5 293 40.6
Ca_08832_v3 Cicer arietinum L. HOM05D004499 ORTHO05D004928 2.3e-27 127.1 300 37.0
Cc06_g03680 Coffea canephora HOM05D004499 ORTHO05D004928 2.3e-27 127.1 352 36.6
Glyma.13G138000 Glycine max HOM05D004499 ORTHO05D004928 5.1e-27 125.9 303 38.3
Lj5g0026303 Lotus japonicus HOM05D004499 ORTHO05D004928 8.7e-27 125.2 337 36.5
Sc20g0005110 Simmondsia chinensis HOM05D004499 ORTHO05D004928 8.7e-27 125.2 327 38.2
Lsat_1_v5_gn_6_30120 Lactuca sativa HOM05D004499 ORTHO05D004928 1.1e-26 124.8 293 37.2
AT5G03110 Arabidopsis thaliana HOM05D004499 ORTHO05D004928 1.5e-26 124.4 297 39.7
Manes.05G197300 Manihot esculenta HOM05D004499 ORTHO05D004928 1.5e-26 124.4 189 45.5
SalBow3G3210 Salvia bowleyana HOM05D004499 ORTHO05D004928 1.5e-26 124.4 299 37.1
Gohir.D04G114901 Gossypium hirsutum HOM05D004499 ORTHO05D004928 9.6e-26 121.7 167 49.7
Medtr1g066750 Medicago truncatula HOM05D004499 ORTHO05D004928 1.3e-25 121.3 292 36.0
Duzib106G0876 Durio zibethinus HOM05D004499 ORTHO05D004928 2.1e-25 120.6 299 36.8
Psat3g044200 Pisum sativum HOM05D004499 ORTHO05D004928 2.1e-25 120.6 315 35.9
Dinv35728 Davidia involucrata HOM05D004499 ORTHO05D004928 1.8e-24 117.5 192 42.2
GSVIVG01025644001 Vitis vinifera HOM05D004499 ORTHO05D004928 6.9e-24 115.5 319 34.5
Psat6g070200 Pisum sativum HOM05D004499 ORTHO05D004928 1.3e-22 111.3 296 35.8
DCAR_009280 Daucus carota HOM05D004499 ORTHO05D004928 2.9e-22 110.2 304 34.9
Sopen00g013370 Solanum pennellii HOM05D004499 ORTHO05D004928 3.8e-22 109.8 301 35.2
MELO3C014257.2 Cucumis melo HOM05D004499 ORTHO05D004928 4.9e-22 109.4 303 34.7
MSTRG.26719 Avicennia marina HOM05D004499 ORTHO05D004928 8.4e-22 108.6 299 37.5
Aqoxy4G03228 Aquilegia oxysepala HOM05D004499 ORTHO05D004928 1.4e-21 107.8 215 39.1
AUR62042302 Chenopodium quinoa HOM05D004499 ORTHO05D004928 1.9e-21 107.5 253 39.1
unitig_26.g9218 Utricularia gibba HOM05D004499 ORTHO05D004928 1.9e-21 107.5 292 37.0
Lalb_Chr20g0112851 Lupinus albus HOM05D004499 ORTHO05D004928 3.2e-21 106.7 229 41.0
PGSC0003DMG400001742 Solanum tuberosum HOM05D004499 ORTHO05D004928 5.5e-21 105.9 304 33.6
ClCG04G008860 Citrullus lanatus HOM05D004499 ORTHO05D004928 9.3e-21 105.1 305 34.8
Lsat_1_v5_gn_1_54160 Lactuca sativa HOM05D004499 ORTHO05D004928 1.2e-20 104.8 287 35.5
Solyc09g007470.2 Solanum lycopersicum HOM05D004499 ORTHO05D004928 2.1e-20 104.0 291 33.7
SGA_v2.0_scaffold126G33909 Striga asiatica HOM05D004499 ORTHO05D004928 2.1e-20 104.0 290 36.9
ECA233G0353 Erigeron canadensis HOM05D004499 ORTHO05D004928 6.0e-20 102.4 286 35.7
Migut.J00423 Erythranthe guttata HOM05D004499 ORTHO05D004928 6.0e-20 102.4 322 33.9
Oeu038974.1 Olea europaea HOM05D004499 ORTHO05D004928 5.1e-19 99.4 362 31.8
Sc02g0001920 Simmondsia chinensis HOM05D004499 ORTHO05D004928 1.9e-18 97.4 269 35.7
CsaV3_6G039360 Cucumis sativus L. HOM05D004499 ORTHO05D004928 2.5e-18 97.1 305 32.8
SHI12538 Sapria himalayana HOM05D004499 ORTHO05D004928 3.3e-18 96.7 301 36.2
COL.COLO4_27061 Corchorus olitorius HOM05D004499 ORTHO05D004928 1.3e-17 94.7 74 71.6
MSTRG.10304 Avicennia marina HOM05D004499 ORTHO05D004928 1.4e-16 91.3 314 32.5
RhsimUnG0115800 Rhododendron simsii HOM05D004499 ORTHO05D004928 3.1e-16 90.1 265 32.8
Sed0011318 Sechium edule HOM05D004499 ORTHO05D004928 4.1e-16 89.7 200 39.0
Ah.15g092180 Amaranthus hybridus HOM05D004499 ORTHO05D004928 2.2e-14 84.0 195 38.5
HanXRQChr02g0051991 Helianthus annuus HOM05D004499 ORTHO05D004928 2.9e-14 83.6 127 44.1
Oeu059988.1 Olea europaea HOM05D004499 ORTHO05D004928 8.4e-14 82.0 407 29.2
Peaxi162Scf00005g04016 Petunia axillaris HOM05D004499 ORTHO05D004928 2.5e-13 80.5 76 57.9
PSO339G1230 Papaver somniferum HOM05D004499 ORTHO05D004928 6.7e-11 72.4 216 33.8
Zm00001eb265390 Zea mays HOM05D004499 ORTHO05D004928 6.7e-11 72.4 229 32.8
SGA_v2.0_scaffold94G28675 Striga asiatica HOM05D004499 ORTHO05D004928 3.3e-10 70.1 289 32.2
TPR.G36959 Trifolium pratense HOM05D004499 ORTHO05D004928 5.7e-10 69.3 174 35.6
AUR62040029 Chenopodium quinoa HOM05D004499 ORTHO05D004928 1.3e-09 68.2 197 35.0
Oeu060092.2 Olea europaea HOM05D000784 ORTHO05D004928 1.6e-09 67.8 217 30.0
PSO063G6372 Papaver somniferum HOM05D004499 ORTHO05D004928 1.6e-09 67.8 293 27.6
HPP92_001043 Vanilla planifolia HOM05D004499 ORTHO05D004928 1.6e-09 67.8 225 33.3
Actinidia40043 Actinidia chinensis HOM05D004499 ORTHO05D004928 2.2e-09 67.4 299 27.1
Nn4g25115 Nelumbo nucifera HOM05D004499 ORTHO05D004928 4.8e-09 66.2 98 39.8
BolC4t28067H Brassica oleracea HOM05D004499 ORTHO05D004928 8.2e-09 65.5 62 59.7
PSO384G2831 Papaver somniferum HOM05D004499 ORTHO05D004928 8.2e-09 65.5 296 28.7
Dinv20215 Davidia involucrata HOM05D004118 ORTHO05D004686 1.5e-07 61.2 238 32.4
PSO339G0805 Papaver somniferum HOM05D004499 ORTHO05D004928 1.3e-06 58.2 313 26.5
ATR0602G295 Amborella trichopoda HOM05D004118 ORTHO05D004686 2.2e-06 57.4 269 28.3
AUR62044753 Chenopodium quinoa HOM05D004499 ORTHO05D004928 5.0e-06 56.2 205 31.2
Nn1g04275 Nelumbo nucifera HOM05D004118 ORTHO05D004686 8.5e-06 55.5 267 29.6


User provided reference genes

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