Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR130470 Cardamine hirsuta HOM05D004449 ORTHO05D005473 1.1e-173 613.2 306 100.0
Carub.0004s1799 Capsella rubella HOM05D004449 ORTHO05D005473 8.8e-160 567.0 307 93.8
AT2G36230 Arabidopsis thaliana HOM05D004449 ORTHO05D005473 1.1e-159 566.6 306 92.5
AL4G32330 Arabidopsis lyrata HOM05D004449 ORTHO05D005473 5.3e-157 557.8 303 92.7
Thhalv10016966m.g Eutrema salsugineum HOM05D004449 ORTHO05D005473 1.2e-153 546.6 311 90.0
BraA03t11251Z Brassica rapa HOM05D004449 ORTHO05D005473 1.6e-153 546.2 304 90.1
BolC3t14740H Brassica oleracea HOM05D004449 ORTHO05D005473 1.4e-152 543.1 304 90.1
Sp4g18450 Schrenkiella parvula HOM05D004449 ORTHO05D005473 1.4e-152 543.1 312 88.5
A03p20000 Brassica napus HOM05D004449 ORTHO05D005473 2.3e-152 542.3 304 89.8
BcaB01g03853 Brassica carinata HOM05D004449 ORTHO05D005473 3.0e-152 542.0 303 88.4
C03p23440 Brassica napus HOM05D004449 ORTHO05D005473 6.7e-152 540.8 304 89.8
A05p09610 Brassica napus HOM05D004449 ORTHO05D005473 1.1e-151 540.0 318 87.1
BcaB02g09374 Brassica carinata HOM05D004449 ORTHO05D005473 1.5e-151 539.7 312 87.2
Aa31LG5G21350 Aethionema arabicum HOM05D004449 ORTHO05D005473 3.3e-151 538.5 309 88.7
BraA05t19914Z Brassica rapa HOM05D004449 ORTHO05D005473 7.0e-149 530.8 318 85.2
BolC4t22839H Brassica oleracea HOM05D004449 ORTHO05D005473 9.4e-146 520.4 310 84.8
BcaC02g11725 Brassica carinata HOM05D004449 ORTHO05D005473 2.2e-134 482.6 293 84.3
THA.LOC104804908 Tarenaya hassleriana HOM05D004449 ORTHO05D005473 4.5e-132 474.9 313 77.6
BcaC02g11727 Brassica carinata HOM05D004449 ORTHO05D005473 7.7e-132 474.2 298 82.2
C04p11920 Brassica napus HOM05D004449 ORTHO05D005473 1.7e-126 456.4 246 91.9
Ciclev10012240m.g Citrus clementina HOM05D004449 ORTHO05D005473 6.3e-126 454.5 299 76.3
TWI74G1045 Tripterygium wilfordii HOM05D004449 ORTHO05D005473 1.8e-125 453.0 309 73.8
Manes.08G025500 Manihot esculenta HOM05D004449 ORTHO05D005473 5.0e-123 444.9 269 80.7
Lsat_1_v5_gn_8_77140 Lactuca sativa HOM05D004449 ORTHO05D005473 6.6e-123 444.5 268 81.7
GSVIVG01033847001 Vitis vinifera HOM05D004449 ORTHO05D005473 8.6e-123 444.1 269 81.8
MD14G1023300 Malus domestica HOM05D004449 ORTHO05D005473 1.1e-122 443.7 310 73.9
MD12G1036500 Malus domestica HOM05D004449 ORTHO05D005473 1.9e-122 443.0 310 73.2
PGR042G0526 Punica granatum HOM05D004449 ORTHO05D005473 1.9e-122 443.0 273 80.2
Ca_00406_v3 Cicer arietinum L. HOM05D004449 ORTHO05D005473 2.5e-122 442.6 308 75.3
Eucgr.A02663 Eucalyptus grandis HOM05D004449 ORTHO05D005473 9.5e-122 440.7 265 82.3
CANSAT64G1281 Cannabis sativa HOM05D004449 ORTHO05D005473 1.2e-121 440.3 264 83.0
RcHm_v2.0_Chr3g0473801 Rosa chinensis HOM05D004449 ORTHO05D005473 2.1e-121 439.5 264 81.8
Cfa016611 Carpinus fangiana HOM05D004449 ORTHO05D005473 2.8e-121 439.1 268 80.2
Medtr2g015010 Medicago truncatula HOM05D004449 ORTHO05D005473 3.6e-121 438.7 269 81.0
CiPaw.10G010000 Carya illinoinensis HOM05D004449 ORTHO05D005473 8.0e-121 437.6 272 79.8
ECA248G0038 Erigeron canadensis HOM05D004449 ORTHO05D005473 1.0e-120 437.2 285 77.9
TPR.G11735 Trifolium pratense HOM05D004449 ORTHO05D005473 1.0e-120 437.2 277 78.0
Gohir.D04G099600 Gossypium hirsutum HOM05D004449 ORTHO05D005473 1.8e-120 436.4 255 83.5
FvH4_6g18790 Fragaria vesca HOM05D004449 ORTHO05D005473 3.1e-120 435.6 264 81.4
Haze_19615 Corylus avellana HOM05D004449 ORTHO05D005473 4.0e-120 435.3 268 79.5
Gorai.009G402500 Gossypium raimondii HOM05D004449 ORTHO05D005473 4.0e-120 435.3 255 83.1
ClCG08G005200 Citrullus lanatus HOM05D004449 ORTHO05D005473 6.8e-120 434.5 268 79.9
QL07p038716 Quercus lobata HOM05D004449 ORTHO05D005473 8.9e-120 434.1 265 80.0
QL07p038966 Quercus lobata HOM05D004449 ORTHO05D005473 8.9e-120 434.1 265 80.0
HanXRQChr03g0063591 Helianthus annuus HOM05D004449 ORTHO05D005473 1.2e-119 433.7 271 80.8
Gohir.A04G062600 Gossypium hirsutum HOM05D004449 ORTHO05D005473 3.4e-119 432.2 264 80.7
Lj1g0018712 Lotus japonicus HOM05D004449 ORTHO05D005473 7.5e-119 431.0 282 77.7
Sc02g0000280 Simmondsia chinensis HOM05D004449 ORTHO05D005473 1.3e-118 430.3 259 81.9
EL10Ac8g19596 Beta vulgaris HOM05D004449 ORTHO05D005473 2.2e-118 429.5 268 79.9
Potri.004G090500 Populus trichocarpa HOM05D004449 ORTHO05D005473 2.2e-118 429.5 266 80.5
Lalb_Chr06g0172241 Lupinus albus HOM05D004449 ORTHO05D005473 6.4e-118 427.9 268 79.9
Glyma.13G153700 Glycine max HOM05D004449 ORTHO05D005473 8.3e-118 427.6 273 79.5
FAN02G4498 Fragaria x ananassa HOM05D004449 ORTHO05D005473 1.4e-117 426.8 301 73.4
Actinidia05427 Actinidia chinensis HOM05D004449 ORTHO05D005473 2.4e-117 426.0 298 73.2
Potri.017G124800 Populus trichocarpa HOM05D004449 ORTHO05D005473 2.4e-117 426.0 293 74.7
VMungo1309G2207 Vigna mungo HOM05D004449 ORTHO05D005473 2.4e-117 426.0 297 73.4
Peaxi162Scf00858g00311 Petunia axillaris HOM05D004449 ORTHO05D005473 4.1e-117 425.2 266 79.7
Sed0019477 Sechium edule HOM05D004449 ORTHO05D005473 4.1e-117 425.2 271 77.5
MELO3C022184.2 Cucumis melo HOM05D004449 ORTHO05D005473 5.4e-117 424.9 269 77.3
Nitab4.5_0006507g0050 Nicotiana tabacum HOM05D004449 ORTHO05D005473 7.0e-117 424.5 265 78.9
Cc06_g05800 Coffea canephora HOM05D004449 ORTHO05D005473 1.6e-116 423.3 266 77.8
Sopen05g034560 Solanum pennellii HOM05D004449 ORTHO05D005473 2.0e-116 422.9 268 79.1
Glyma.02G054800 Glycine max HOM05D004449 ORTHO05D005473 2.7e-116 422.5 258 81.8
SalBow3G1569 Salvia bowleyana HOM05D004449 ORTHO05D005473 2.7e-116 422.5 271 75.3
CAN.G694.90 Capsicum annuum HOM05D004449 ORTHO05D005473 4.6e-116 421.8 268 79.1
Phvul.009G260700 Phaseolus vulgaris HOM05D004449 ORTHO05D005473 6.0e-116 421.4 290 74.5
PGSC0003DMG400023338 Solanum tuberosum HOM05D004449 ORTHO05D005473 6.0e-116 421.4 268 78.7
Zm00001eb020250 Zea mays HOM05D004449 ORTHO05D005473 6.0e-116 421.4 261 78.2
Nn6g34893 Nelumbo nucifera HOM05D004449 ORTHO05D005473 7.8e-116 421.0 265 78.5
TAR623G0834 Trochodendron aralioides HOM05D004449 ORTHO05D005473 7.8e-116 421.0 265 78.9
Nitab4.5_0000582g0210 Nicotiana tabacum HOM05D004449 ORTHO05D005473 1.0e-115 420.6 268 77.2
Solyc05g056150.4 Solanum lycopersicum HOM05D004449 ORTHO05D005473 1.0e-115 420.6 268 78.7
Hma1.2p1_0084F.1_g043840 Hydrangea macrophylla HOM05D004449 ORTHO05D005473 1.3e-115 420.2 293 73.0
Hma1.2p1_0820F.1_g223850 Hydrangea macrophylla HOM05D004449 ORTHO05D005473 1.3e-115 420.2 293 73.0
Zm00001eb287580 Zea mays HOM05D004449 ORTHO05D005473 1.3e-115 420.2 261 78.2
Migut.J01033 Erythranthe guttata HOM05D004449 ORTHO05D005473 3.0e-115 419.1 269 77.7
CSS0045328 Camellia sinensis var. sinensis HOM05D004449 ORTHO05D005473 5.0e-115 418.3 269 76.2
FAN14G0980 Fragaria x ananassa HOM05D004449 ORTHO05D005473 5.0e-115 418.3 298 72.1
vmacro21413 Vaccinium macrocarpon HOM05D004449 ORTHO05D005473 5.0e-115 418.3 299 70.2
SalBow4G0277 Salvia bowleyana HOM05D004449 ORTHO05D005473 8.6e-115 417.5 271 74.5
Nitab4.5_0004212g0050 Nicotiana tabacum HOM05D004449 ORTHO05D005473 1.5e-114 416.8 268 76.5
FAN05G3651 Fragaria x ananassa HOM05D004449 ORTHO05D005473 1.9e-114 416.4 326 68.1
FAN05G3501 Fragaria x ananassa HOM05D004449 ORTHO05D005473 2.5e-114 416.0 298 71.5
BcaB02g09373 Brassica carinata HOM05D004449 ORTHO05D005473 9.5e-114 414.1 331 68.6
Aqoxy1G00845 Aquilegia oxysepala HOM05D004449 ORTHO05D005473 1.6e-113 413.3 273 77.3
PSO339G4690 Papaver somniferum HOM05D004449 ORTHO05D005473 1.6e-113 413.3 258 76.7
MSTRG.19262 Avicennia marina HOM05D004449 ORTHO05D005473 2.1e-113 412.9 264 76.1
MBI17_g08343_MAGBIO Magnolia biondii HOM05D004449 ORTHO05D005473 1.8e-112 409.8 265 75.5
PSO384G3644 Papaver somniferum HOM05D004449 ORTHO05D005473 3.1e-112 409.1 258 76.7
ATR1125G096 Amborella trichopoda HOM05D004449 ORTHO05D005473 1.2e-111 407.1 274 72.6
RhsimUnG0066300 Rhododendron simsii HOM05D004449 ORTHO05D005473 3.4e-111 405.6 306 68.3
Duzib093G2067 Durio zibethinus HOM05D004449 ORTHO05D005473 9.8e-111 404.1 260 77.7
SHI27835 Sapria himalayana HOM05D004449 ORTHO05D005473 1.9e-109 399.8 267 72.7
CDE07G1047 Ceratophyllum demersum HOM05D004449 ORTHO05D005473 2.4e-109 399.4 264 72.3
Lj2A137G26 Lonicera japonica HOM05D004449 ORTHO05D005473 4.1e-109 398.7 247 79.4
vmacro04352 Vaccinium macrocarpon HOM05D004449 ORTHO05D005473 1.2e-108 397.1 308 66.2
Atru.chr12.1330 Acer truncatum HOM05D004449 ORTHO05D005473 1.3e-107 393.7 280 72.9
Ah.04g162190 Amaranthus hybridus HOM05D005123 ORTHO05D006532 6.6e-107 391.3 254 76.4
Pp3c12_22840 Physcomitrium patens HOM05D004449 ORTHO05D005473 1.3e-102 377.1 263 68.8
Nitab4.5_0000071g0140 Nicotiana tabacum HOM05D004449 ORTHO05D005473 2.2e-102 376.3 292 67.1
AUR62036483 Chenopodium quinoa HOM05D004449 ORTHO05D005473 4.9e-102 375.2 234 77.8
HPP92_001188 Vanilla planifolia HOM05D004449 ORTHO05D005473 1.9e-101 373.2 258 69.0
DCAR_006449 Daucus carota HOM05D004449 ORTHO05D005473 3.2e-101 372.5 226 78.3
Prupe.7G109700 Prunus persica HOM05D004449 ORTHO05D005473 1.5e-98 363.6 259 72.2
Rhsim07G0247400 Rhododendron simsii HOM05D004449 ORTHO05D005473 4.3e-98 362.1 366 55.2
AagrBONN_evm.TU.Sc2ySwM_344.169 Anthoceros agrestis HOM05D004449 ORTHO05D005473 5.6e-98 361.7 262 67.6
CiPaw.09G014500 Carya illinoinensis HOM05D004449 ORTHO05D005473 1.4e-96 357.1 265 70.2
SMO271G0065 Selaginella moellendorffii HOM05D004449 ORTHO05D005473 8.9e-96 354.4 263 66.9
Dinv21204 Davidia involucrata HOM05D004449 ORTHO05D005473 1.3e-94 350.5 217 77.9
SGA_v2.0_scaffold75G24747 Striga asiatica HOM05D004449 ORTHO05D005473 1.3e-94 350.5 257 68.9
Cre12.g495300 Chlamydomonas reinhardtii HOM05D004449 ORTHO05D005473 2.9e-94 349.4 261 64.0
Sabra17G0105100 Salix brachista HOM05D001392 ORTHO05D006407 4.2e-93 345.5 258 69.0
AUR62037092 Chenopodium quinoa HOM05D004449 ORTHO05D005473 1.0e-91 340.9 251 69.7
Mapoly0011s0027 Marchantia polymorpha HOM05D004449 ORTHO05D005473 1.1e-90 337.4 270 62.2
PRCOL_00002294 Prasinoderma coloniale HOM05D004449 ORTHO05D005473 1.9e-90 336.7 262 64.9
CsaV3_5G040040 Cucumis sativus L. HOM05D004449 ORTHO05D005473 2.1e-89 333.2 214 78.5
MCO11G008 Micromonas commoda HOM05D004449 ORTHO05D005473 2.9e-86 322.8 261 60.5
Thecc.05G089600 Theobroma cacao HOM05D004449 ORTHO05D005473 2.9e-86 322.8 244 68.9
CBR_g21822 Chara braunii HOM05D004449 ORTHO05D005473 9.6e-82 307.8 270 60.0
VMungo0647G1368 Vigna mungo HOM05D004449 ORTHO05D005473 4.8e-81 305.4 255 65.5
Atru.chr8.1532 Acer truncatum HOM05D004449 ORTHO05D005473 1.1e-80 304.3 174 84.5
Cpa.g.sc999.2 Carica papaya HOM05D004449 ORTHO05D005473 1.4e-77 293.9 310 55.2
Lalb_Chr06g0172381 Lupinus albus HOM05D004449 ORTHO05D005473 4.6e-76 288.9 171 81.9
vmacro04351 Vaccinium macrocarpon HOM05D004449 ORTHO05D005473 5.1e-75 285.4 236 62.7
Rhsim07G0247300 Rhododendron simsii HOM05D004449 ORTHO05D005473 3.8e-70 269.2 183 71.6
RhsimUnG0066500 Rhododendron simsii HOM05D004449 ORTHO05D005473 5.5e-69 265.4 183 71.0
ClCG08G000960 Citrullus lanatus HOM05D004449 ORTHO05D005473 3.7e-65 252.7 186 70.4
BcaC02g11729 Brassica carinata HOM05D004449 ORTHO05D005473 5.8e-63 245.4 168 76.8
Psat1g201080 Pisum sativum HOM05D004449 ORTHO05D005473 1.9e-61 240.4 172 72.7
RcHm_v2.0_Chr5g0027171 Rosa chinensis HOM05D004449 ORTHO05D005473 2.5e-61 240.0 170 72.9
Oeu056880.1 Olea europaea HOM05D004449 ORTHO05D005473 2.1e-60 236.9 148 76.4
COL.COLO4_29729 Corchorus olitorius HOM05D004449 ORTHO05D005473 1.3e-59 234.2 140 79.3
Cfa023382 Carpinus fangiana HOM05D004449 ORTHO05D005473 1.1e-56 224.6 261 45.2
arahy.Tifrunner.gnm1.ann1.1FC84E Arachis hypogaea HOM05D004449 ORTHO05D005473 1.1e-48 198.0 119 79.0
arahy.Tifrunner.gnm1.ann1.IMVN0M Arachis hypogaea HOM05D004449 ORTHO05D005473 1.1e-48 198.0 119 79.0
arahy.Tifrunner.gnm1.ann1.L677I4 Arachis hypogaea HOM05D004449 ORTHO05D005473 2.4e-48 196.8 122 76.2
Cc11_g01850 Coffea canephora HOM05D004449 ORTHO05D005473 3.1e-48 196.4 144 68.1
arahy.Tifrunner.gnm1.ann1.H91IF8 Arachis hypogaea HOM05D004449 ORTHO05D005473 1.2e-47 194.5 121 76.9
ECA233G4866 Erigeron canadensis HOM05D004449 ORTHO05D005473 2.5e-45 186.8 109 85.3
RcHm_v2.0_Chr4g0393091 Rosa chinensis HOM05D004449 ORTHO05D005473 4.5e-39 166.0 108 75.0
SEGI_28293 Sequoiadendron giganteum HOM05D004449 ORTHO05D005473 2.1e-36 157.1 138 59.4
SMO308G0039 Selaginella moellendorffii HOM05D004449 ORTHO05D005473 3.6e-36 156.4 148 54.1
Mapoly0100s0062 Marchantia polymorpha HOM05D004449 ORTHO05D005473 6.1e-36 155.6 129 55.8
BcaC02g11730 Brassica carinata HOM05D004449 ORTHO05D005473 1.4e-35 154.5 114 71.9
unitig_8.g4306 Utricularia gibba HOM05D004449 ORTHO05D005473 9.7e-34 148.3 270 37.0
CDE04G3206 Ceratophyllum demersum HOM05D004449 ORTHO05D005473 1.2e-31 141.4 192 42.7
SMO164G0227 Selaginella moellendorffii HOM05D004449 ORTHO05D005473 2.0e-31 140.6 115 60.0
RcHm_v2.0_Chr1g0350151 Rosa chinensis HOM05D004449 ORTHO05D005473 3.5e-31 139.8 88 75.0
COL.COLO4_29730 Corchorus olitorius HOM05D004449 ORTHO05D005473 1.3e-30 137.9 151 56.3
CDE04G2184 Ceratophyllum demersum HOM05D004449 ORTHO05D000837 7.2e-29 132.1 198 40.9
Os05g0400800 Oryza sativa ssp. japonica HOM05D004449 ORTHO05D005473 1.6e-28 131.0 84 77.4
SEGI_22783 Sequoiadendron giganteum HOM05D004449 ORTHO05D005473 2.4e-24 117.1 71 77.5
TAR369G0358 Trochodendron aralioides HOM05D003904 ORTHO05D004378 1.6e-23 114.4 71 80.3
Lalb_Chr06g0172371 Lupinus albus HOM05D004449 ORTHO05D005473 8.5e-22 108.6 70 80.0
Rhsim07G0247200 Rhododendron simsii HOM05D004449 ORTHO05D005473 1.4e-19 101.3 65 69.2
arahy.Tifrunner.gnm1.ann1.E2537D Arachis hypogaea HOM05D019151 ORTHO05D005473 2.2e-17 94.0 94 53.2
arahy.Tifrunner.gnm1.ann1.TG6NMP Arachis hypogaea HOM05D019151 ORTHO05D005473 2.2e-17 94.0 94 53.2
Sabra04G0060800 Salix brachista HOM05D004449 ORTHO05D005473 1.2e-15 88.2 196 37.8
Rhsim09G0019600 Rhododendron simsii HOM05D004449 ORTHO05D005473 2.3e-14 84.0 70 64.3
RcHm_v2.0_Chr4g0409701 Rosa chinensis HOM05D004449 ORTHO05D005473 1.2e-12 78.2 46 84.8
Aqoxy84s005 Aquilegia oxysepala HOM05D004902 ORTHO05D038539 2.9e-09 67.0 243 23.0
SEGI_40272 Sequoiadendron giganteum HOM05D004449 ORTHO05D005473 5.4e-08 62.8 34 76.5


User provided reference genes

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