Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR130110 Cardamine hirsuta HOM05D005113 ORTHO05D006045 1.2e-46 189.5 100 100.0
AL4G31960 Arabidopsis lyrata HOM05D005113 ORTHO05D006045 1.6e-22 109.4 77 79.2
Carub.0004s1761 Capsella rubella HOM05D005113 ORTHO05D006045 2.8e-22 108.6 103 67.0
A04p27340 Brassica napus HOM05D005113 ORTHO05D006045 1.4e-21 106.3 97 68.0
BraA04t18232Z Brassica rapa HOM05D005113 ORTHO05D006045 4.9e-19 97.8 97 63.9
AT2G35850 Arabidopsis thaliana HOM05D005113 ORTHO05D006045 8.4e-19 97.1 74 75.7
Aa31LG10G7390 Aethionema arabicum HOM05D005113 ORTHO05D006045 2.3e-16 89.0 73 67.1
A03p19780 Brassica napus HOM05D005113 ORTHO05D006045 3.0e-16 88.6 91 61.5
BraA03t11230Z Brassica rapa HOM05D005113 ORTHO05D006045 3.0e-16 88.6 91 61.5
AT3G52360 Arabidopsis thaliana HOM05D005113 ORTHO05D006045 3.9e-16 88.2 78 66.7
C03p23070 Brassica napus HOM05D005113 ORTHO05D006045 3.9e-16 88.2 91 61.5
C04p64840 Brassica napus HOM05D005113 ORTHO05D006045 3.9e-16 88.2 89 62.9
BcaB01g03875 Brassica carinata HOM05D005113 ORTHO05D006045 5.1e-16 87.8 92 60.9
CARHR162120 Cardamine hirsuta HOM05D005113 ORTHO05D006045 5.1e-16 87.8 71 69.0
AL5G33010 Arabidopsis lyrata HOM05D005113 ORTHO05D006045 6.7e-16 87.4 78 65.4
BcaB06g28884 Brassica carinata HOM05D005113 ORTHO05D006045 6.7e-16 87.4 98 60.2
Sp5g09930 Schrenkiella parvula HOM05D005113 ORTHO05D006045 6.7e-16 87.4 71 69.0
Thhalv10010863m.g Eutrema salsugineum HOM05D005113 ORTHO05D006045 8.7e-16 87.0 71 69.0
BcaC01g05698 Brassica carinata HOM05D005113 ORTHO05D006045 1.1e-15 86.7 91 60.4
BolC3t14709H Brassica oleracea HOM05D005113 ORTHO05D006045 1.1e-15 86.7 91 60.4
BolC4t27961H Brassica oleracea HOM05D005113 ORTHO05D006045 1.5e-15 86.3 86 65.1
BcaB02g08576 Brassica carinata HOM05D005113 ORTHO05D006045 1.9e-15 85.9 71 67.6
BcaC02g09265 Brassica carinata HOM05D005113 ORTHO05D006045 1.9e-15 85.9 71 67.6
A04p07080 Brassica napus HOM05D005113 ORTHO05D006045 1.9e-15 85.9 71 67.6
C04p40660 Brassica napus HOM05D005113 ORTHO05D006045 1.9e-15 85.9 71 67.6
BolC4t25648H Brassica oleracea HOM05D005113 ORTHO05D006045 1.9e-15 85.9 71 67.6
BraA04t16405Z Brassica rapa HOM05D005113 ORTHO05D006045 1.9e-15 85.9 71 67.6
BcaC02g07662 Brassica carinata HOM05D005113 ORTHO05D006045 3.3e-15 85.1 86 64.0
A09p45370 Brassica napus HOM05D005113 ORTHO05D006045 3.3e-15 85.1 74 64.9
BraA09t40001Z Brassica rapa HOM05D005113 ORTHO05D006045 3.3e-15 85.1 74 64.9
BcaC07g39601 Brassica carinata HOM05D005113 ORTHO05D006045 4.3e-15 84.7 74 63.5
C08p27550 Brassica napus HOM05D005113 ORTHO05D006045 4.3e-15 84.7 74 63.5
BolC8t50376H Brassica oleracea HOM05D005113 ORTHO05D006045 4.3e-15 84.7 74 63.5
Carub.0005s1871 Capsella rubella HOM05D005113 ORTHO05D006045 4.3e-15 84.7 81 64.2
THA.LOC104803378 Tarenaya hassleriana HOM05D005113 ORTHO05D006045 4.3e-15 84.7 71 64.8
BcaB01g00380 Brassica carinata HOM05D005113 ORTHO05D006045 9.6e-15 83.6 71 64.8
TWI53G1462 Tripterygium wilfordii HOM05D005113 ORTHO05D006045 4.8e-14 81.3 82 57.3
THA.LOC104803375 Tarenaya hassleriana HOM05D005113 ORTHO05D006045 6.2e-14 80.9 80 58.8
Ciclev10013205m.g Citrus clementina HOM05D005113 ORTHO05D006045 9.0e-13 77.0 76 57.9
TWI74G1336 Tripterygium wilfordii HOM05D005113 ORTHO05D006045 9.0e-13 77.0 82 56.1
PSO384G2214 Papaver somniferum HOM05D005113 ORTHO05D006045 1.2e-12 76.6 74 58.1
PSO339G6075 Papaver somniferum HOM05D005113 ORTHO05D006045 2.6e-12 75.5 101 50.5
TAR623G1290 Trochodendron aralioides HOM05D005113 ORTHO05D006045 3.4e-12 75.1 78 55.1
Cpa.g.sc222.18 Carica papaya HOM05D005113 ORTHO05D006045 4.5e-12 74.7 75 56.0
CiPaw.10G020600 Carya illinoinensis HOM05D005113 ORTHO05D006045 5.8e-12 74.3 75 58.7
Atru.chr8.1293 Acer truncatum HOM05D005113 ORTHO05D006045 7.6e-12 73.9 84 52.4
CSS0024187 Camellia sinensis var. sinensis HOM05D005113 ORTHO05D006045 7.6e-12 73.9 65 60.0
Aqoxy1G00593 Aquilegia oxysepala HOM05D005113 ORTHO05D006045 1.3e-11 73.2 73 61.6
BraA09t40003Z Brassica rapa HOM05D005113 ORTHO05D006045 1.7e-11 72.8 74 58.1
QL07p026499 Quercus lobata HOM05D005113 ORTHO05D006045 2.9e-11 72.0 85 55.3
Dinv11892 Davidia involucrata HOM05D005113 ORTHO05D006045 4.9e-11 71.2 75 57.3
Dinv25078 Davidia involucrata HOM05D005113 ORTHO05D006045 4.9e-11 71.2 66 62.1
TWI77G0719 Tripterygium wilfordii HOM05D005113 ORTHO05D006045 6.5e-11 70.9 72 55.6
Nn1g06541 Nelumbo nucifera HOM05D005113 ORTHO05D006045 1.1e-10 70.1 73 53.4
CiPaw.09G023700 Carya illinoinensis HOM05D005113 ORTHO05D006045 1.4e-10 69.7 92 46.7
Potri.006G200000 Populus trichocarpa HOM05D005113 ORTHO05D006045 1.4e-10 69.7 75 52.0
MD14G1044100 Malus domestica HOM05D005113 ORTHO05D006045 1.9e-10 69.3 85 51.8
Sabra16G0067600 Salix brachista HOM05D005113 ORTHO05D006045 1.9e-10 69.3 68 55.9
Duzib093G2033 Durio zibethinus HOM05D005113 ORTHO05D006045 2.5e-10 68.9 66 59.1
Nn2g14410 Nelumbo nucifera HOM05D005113 ORTHO05D006045 2.5e-10 68.9 75 53.3
Potri.016G066200 Populus trichocarpa HOM05D005113 ORTHO05D006045 2.5e-10 68.9 77 51.9
Thecc.05G109700 Theobroma cacao HOM05D005113 ORTHO05D006045 2.5e-10 68.9 77 53.2
GSVIVG01022551001 Vitis vinifera HOM05D005113 ORTHO05D006045 2.5e-10 68.9 77 54.5
CANSAT64G1258 Cannabis sativa HOM05D005113 ORTHO05D006045 3.2e-10 68.6 89 51.7
Duzib106G0847 Durio zibethinus HOM05D005113 ORTHO05D006045 4.2e-10 68.2 68 54.4
TAR633G2365 Trochodendron aralioides HOM05D005113 ORTHO05D006045 5.5e-10 67.8 73 56.2
Haze_20118 Corylus avellana HOM05D005113 ORTHO05D006045 9.3e-10 67.0 80 52.5
Sabra06G0153800 Salix brachista HOM05D005113 ORTHO05D006045 9.3e-10 67.0 71 52.1
TAR369G1050 Trochodendron aralioides HOM05D005113 ORTHO05D006045 9.3e-10 67.0 77 51.9
Actinidia07952 Actinidia chinensis HOM05D005113 ORTHO05D006045 1.6e-09 66.2 67 58.2
Sp4g18110 Schrenkiella parvula HOM05D005113 ORTHO05D006045 2.7e-09 65.5 37 91.9
Haze_07788 Corylus avellana HOM05D005113 ORTHO05D006045 3.5e-09 65.1 79 49.4
MD12G1045200 Malus domestica HOM05D005113 ORTHO05D006045 3.5e-09 65.1 84 48.8
PSO384G1750 Papaver somniferum HOM05D005113 ORTHO05D006045 4.6e-09 64.7 104 40.4
Manes.08G036800 Manihot esculenta HOM05D005113 ORTHO05D006045 6.0e-09 64.3 68 52.9
HPP92_013935 Vanilla planifolia HOM05D005113 ORTHO05D006045 6.0e-09 64.3 82 53.7
Thhalv10017703m.g Eutrema salsugineum HOM05D005113 ORTHO05D006045 7.9e-09 63.9 46 76.1
FAN05G0955 Fragaria x ananassa HOM05D005113 ORTHO05D006045 1.0e-08 63.5 89 48.3
FAN05G3212 Fragaria x ananassa HOM05D005113 ORTHO05D006045 1.0e-08 63.5 89 48.3
FAN09G1514 Fragaria x ananassa HOM05D005113 ORTHO05D006045 1.0e-08 63.5 89 48.3
FvH4_6g20940 Fragaria vesca HOM05D005113 ORTHO05D006045 1.3e-08 63.2 83 48.2
FAN14G1795 Fragaria x ananassa HOM05D005113 ORTHO05D006045 1.3e-08 63.2 83 48.2
Actinidia06192 Actinidia chinensis HOM05D005113 ORTHO05D006045 1.8e-08 62.8 74 55.4
Cfa019390 Carpinus fangiana HOM05D005113 ORTHO05D006045 1.8e-08 62.8 79 49.4
MBI05_g03323_MAGBIO Magnolia biondii HOM05D005113 ORTHO05D006045 1.8e-08 62.8 72 47.2
FAN02G2823 Fragaria x ananassa HOM05D005113 ORTHO05D006045 3.0e-08 62.0 90 45.6
Oeu020160.1 Olea europaea HOM05D005113 ORTHO05D006045 3.9e-08 61.6 79 50.6
Gohir.A11G315200 Gossypium hirsutum HOM05D005113 ORTHO05D006045 6.7e-08 60.8 68 51.5
MBI11_g26202_MAGBIO Magnolia biondii HOM05D005113 ORTHO05D006045 8.7e-08 60.5 77 44.2
MBI11_g46321_MAGBIO Magnolia biondii HOM05D005113 ORTHO05D006045 8.7e-08 60.5 77 44.2
Gorai.007G363100 Gossypium raimondii HOM05D005113 ORTHO05D006045 1.1e-07 60.1 67 52.2
Prupe.7G090200 Prunus persica HOM05D005113 ORTHO05D006045 1.1e-07 60.1 78 50.0
PSO384G4604 Papaver somniferum HOM05D005113 ORTHO05D006045 1.9e-07 59.3 99 41.4
RcHm_v2.0_Chr3g0477281 Rosa chinensis HOM05D005113 ORTHO05D006045 1.9e-07 59.3 89 44.9
Gohir.D11G332200 Gossypium hirsutum HOM05D005113 ORTHO05D006045 3.3e-07 58.5 67 50.7
A09p45390 Brassica napus HOM05D005113 ORTHO05D006045 5.7e-07 57.8 77 51.9
Eucgr.A02548 Eucalyptus grandis HOM05D005113 ORTHO05D006045 7.4e-07 57.4 82 45.1
Rhsim04G0135100 Rhododendron simsii HOM05D005113 ORTHO05D006045 9.6e-07 57.0 67 53.7
HanXRQChr07g0196541 Helianthus annuus HOM05D005113 ORTHO05D006045 1.6e-06 56.2 58 53.4
Lsat_1_v5_gn_2_101981 Lactuca sativa HOM05D005113 ORTHO05D006045 1.6e-06 56.2 67 49.3
Cc06_g06930 Coffea canephora HOM05D005113 ORTHO05D006045 2.1e-06 55.8 53 58.5
Gohir.D04G093000 Gossypium hirsutum HOM05D005113 ORTHO05D006045 3.7e-06 55.1 74 43.2
Gohir.D09G128500 Gossypium hirsutum HOM05D005113 ORTHO05D006045 3.7e-06 55.1 64 53.1
ECA238G1367 Erigeron canadensis HOM05D005113 ORTHO05D006045 4.8e-06 54.7 54 53.7
MSTRG.26588 Avicennia marina HOM05D005113 ORTHO05D006045 8.2e-06 53.9 88 44.3


User provided reference genes

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