Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR130090 Cardamine hirsuta HOM05D005240 ORTHO05D006471 3.9e-69 264.6 127 100.0
Thhalv10017274m.g Eutrema salsugineum HOM05D005240 ORTHO05D006471 7.8e-46 187.2 114 77.2
BcaB06g28877 Brassica carinata HOM05D005240 ORTHO05D006471 3.9e-45 184.9 112 80.4
Sp4g18090 Schrenkiella parvula HOM05D005240 ORTHO05D006471 7.3e-44 180.6 114 75.4
A04p27280 Brassica napus HOM05D005240 ORTHO05D006471 9.6e-44 180.3 115 77.4
BraA04t18226Z Brassica rapa HOM05D005240 ORTHO05D006471 9.6e-44 180.3 115 77.4
Carub.0004s1759 Capsella rubella HOM05D005240 ORTHO05D006471 1.6e-43 179.5 117 75.2
BcaC02g07666 Brassica carinata HOM05D005240 ORTHO05D006471 2.8e-43 178.7 115 76.5
AL4G31940 Arabidopsis lyrata HOM05D005240 ORTHO05D006471 5.8e-41 171.0 111 75.7
C04p64800 Brassica napus HOM05D005240 ORTHO05D006471 5.8e-41 171.0 115 73.0
BolC4t27957H Brassica oleracea HOM05D005240 ORTHO05D006471 5.8e-41 171.0 115 73.0
CARHR130080 Cardamine hirsuta HOM05D005240 ORTHO05D006471 5.8e-41 171.0 102 79.4
THA.LOC104803452 Tarenaya hassleriana HOM05D005240 ORTHO05D006471 1.7e-40 169.5 108 70.4
AL4G31930 Arabidopsis lyrata HOM05D005240 ORTHO05D006471 2.2e-40 169.1 113 69.9
AT2G35820 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 1.2e-38 163.3 116 70.7
arahy.Tifrunner.gnm1.ann1.CT8M8A Arachis hypogaea HOM05D005240 ORTHO05D006471 1.0e-37 160.2 114 62.3
Gohir.A05G344500 Gossypium hirsutum HOM05D005240 ORTHO05D006471 1.8e-37 159.5 110 64.5
Thecc.10G068200 Theobroma cacao HOM05D005240 ORTHO05D006471 2.3e-37 159.1 110 64.5
TWI15G1019 Tripterygium wilfordii HOM05D005240 ORTHO05D006471 3.0e-37 158.7 110 63.6
RcHm_v2.0_Chr1g0364101 Rosa chinensis HOM05D005240 ORTHO05D006471 3.9e-37 158.3 110 70.0
AT2G35810 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 5.1e-37 157.9 112 69.6
Lj5g0013716 Lotus japonicus HOM05D005240 ORTHO05D006471 5.1e-37 157.9 110 62.7
arahy.Tifrunner.gnm1.ann1.9PA5H9 Arachis hypogaea HOM05D005240 ORTHO05D006471 6.7e-37 157.5 114 62.3
GSVIVG01016337001 Vitis vinifera HOM05D005240 ORTHO05D006471 8.7e-37 157.1 114 64.0
Gohir.D04G083000 Gossypium hirsutum HOM05D005240 ORTHO05D006471 1.1e-36 156.8 110 63.6
Peaxi162Scf00373g00310 Petunia axillaris HOM05D005240 ORTHO05D006471 1.1e-36 156.8 129 61.2
AT2G35830 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 1.5e-36 156.4 112 67.9
Atru.chr12.634 Acer truncatum HOM05D005240 ORTHO05D006471 1.9e-36 156.0 112 63.4
arahy.Tifrunner.gnm1.ann1.D7L05R Arachis hypogaea HOM05D005240 ORTHO05D006471 1.9e-36 156.0 114 60.5
Gorai.012G093700 Gossypium raimondii HOM05D005240 ORTHO05D006471 2.5e-36 155.6 110 62.7
FAN03G2612 Fragaria x ananassa HOM05D005240 ORTHO05D006471 3.3e-36 155.2 110 67.3
Medtr1g095890 Medicago truncatula HOM05D005240 ORTHO05D006471 3.3e-36 155.2 107 64.5
TPR.G10956 Trifolium pratense HOM05D005240 ORTHO05D006471 3.3e-36 155.2 104 66.3
FvH4_7g20150 Fragaria vesca HOM05D005240 ORTHO05D006471 4.3e-36 154.8 103 69.9
FAN06G0525 Fragaria x ananassa HOM05D005240 ORTHO05D006471 4.3e-36 154.8 103 69.9
Lalb_Chr06g0162141 Lupinus albus HOM05D005240 ORTHO05D006471 4.3e-36 154.8 110 61.8
QL08p056831 Quercus lobata HOM05D005240 ORTHO05D006471 4.3e-36 154.8 116 62.9
CiPaw.01G276500 Carya illinoinensis HOM05D005240 ORTHO05D006471 5.6e-36 154.5 108 66.7
PGR044G1235 Punica granatum HOM05D005240 ORTHO05D006471 7.4e-36 154.1 114 64.9
Ca_10594_v3 Cicer arietinum L. HOM05D005240 ORTHO05D006471 9.6e-36 153.7 107 66.4
Glyma.10G213900 Glycine max HOM05D005240 ORTHO05D006471 1.3e-35 153.3 114 60.5
Nitab4.5_0000061g0160 Nicotiana tabacum HOM05D005240 ORTHO05D006471 1.3e-35 153.3 114 61.4
FAN10G3611 Fragaria x ananassa HOM05D005240 ORTHO05D006471 1.6e-35 152.9 111 66.7
MD07G1179100 Malus domestica HOM05D005240 ORTHO05D006471 1.6e-35 152.9 113 64.6
Sc14g0005480 Simmondsia chinensis HOM05D005240 ORTHO05D006471 1.6e-35 152.9 107 64.5
vmacro17506 Vaccinium macrocarpon HOM05D005240 ORTHO05D006471 1.6e-35 152.9 114 63.2
Manes.10G042700 Manihot esculenta HOM05D005240 ORTHO05D006471 2.1e-35 152.5 108 66.7
Nitab4.5_0001721g0020 Nicotiana tabacum HOM05D005240 ORTHO05D006471 2.1e-35 152.5 114 60.5
Hma1.2p1_0453F.1_g156180 Hydrangea macrophylla HOM05D005240 ORTHO05D006471 2.8e-35 152.1 110 63.6
Hund19334 Selenicereus undatus HOM05D005240 ORTHO05D006471 2.8e-35 152.1 111 64.0
Lj8C95T7 Lonicera japonica HOM05D005240 ORTHO05D006471 3.7e-35 151.8 109 65.1
TAR636G2864 Trochodendron aralioides HOM05D005240 ORTHO05D006471 3.7e-35 151.8 110 61.8
Psat6g186000 Pisum sativum HOM05D005240 ORTHO05D006471 4.8e-35 151.4 110 61.8
Sopen10g001790 Solanum pennellii HOM05D005240 ORTHO05D006471 4.8e-35 151.4 113 60.2
Cc09_g02730 Coffea canephora HOM05D005240 ORTHO05D006471 6.2e-35 151.0 114 59.6
Migut.F01799 Erythranthe guttata HOM05D005240 ORTHO05D006471 8.1e-35 150.6 109 62.4
Nn2g13000 Nelumbo nucifera HOM05D005240 ORTHO05D006471 8.1e-35 150.6 114 60.5
Solyc10g005830.3 Solanum lycopersicum HOM05D005240 ORTHO05D006471 8.1e-35 150.6 113 61.9
TWI38G0703 Tripterygium wilfordii HOM05D005240 ORTHO05D006471 8.1e-35 150.6 110 60.9
Sabra10G0168200 Salix brachista HOM05D005240 ORTHO05D006471 1.1e-34 150.2 111 62.2
TPR.G15475 Trifolium pratense HOM05D005240 ORTHO05D006471 1.1e-34 150.2 120 56.7
MSTRG.355 Avicennia marina HOM05D005240 ORTHO05D006471 1.4e-34 149.8 110 60.9
Prupe.2G218200 Prunus persica HOM05D005240 ORTHO05D006471 1.8e-34 149.4 118 59.3
VMungo0720G3076 Vigna mungo HOM05D005240 ORTHO05D006471 1.8e-34 149.4 114 57.9
CANSAT56G2007 Cannabis sativa HOM05D005240 ORTHO05D006471 2.4e-34 149.1 125 60.8
Aqoxy4G03197 Aquilegia oxysepala HOM05D005240 ORTHO05D006471 3.1e-34 148.7 110 60.9
CANSAT56G3849 Cannabis sativa HOM05D005240 ORTHO05D006471 4.0e-34 148.3 126 59.5
Glyma.10G214000 Glycine max HOM05D005240 ORTHO05D006471 4.0e-34 148.3 114 60.5
Duzib114G0729 Durio zibethinus HOM05D005240 ORTHO05D006471 5.3e-34 147.9 107 61.7
Thecc.10G068300 Theobroma cacao HOM05D005240 ORTHO05D006471 6.9e-34 147.5 110 60.0
PSO210G2142 Papaver somniferum HOM05D005240 ORTHO05D006471 1.2e-33 146.7 107 61.7
Dinv31345 Davidia involucrata HOM05D005240 ORTHO05D006471 2.6e-33 145.6 106 62.3
HanXRQChr07g0200441 Helianthus annuus HOM05D005240 ORTHO05D006471 2.6e-33 145.6 106 65.1
Phvul.007G091800 Phaseolus vulgaris HOM05D005240 ORTHO05D006471 2.6e-33 145.6 114 57.9
CSS0026127 Camellia sinensis var. sinensis HOM05D005240 ORTHO05D006471 4.5e-33 144.8 103 62.1
Potri.010G217500 Populus trichocarpa HOM05D005240 ORTHO05D006471 4.5e-33 144.8 111 60.4
Duzib128G0461 Durio zibethinus HOM05D005240 ORTHO05D006471 7.6e-33 144.1 110 62.7
Os01g0833200 Oryza sativa ssp. japonica HOM05D005240 ORTHO05D006471 1.7e-32 142.9 111 63.1
Actinidia38251 Actinidia chinensis HOM05D005240 ORTHO05D006471 2.2e-32 142.5 114 62.3
Eucgr.J01124 Eucalyptus grandis HOM05D005240 ORTHO05D006471 3.8e-32 141.7 114 59.6
Medtr1g095900 Medicago truncatula HOM05D005240 ORTHO05D006471 3.8e-32 141.7 110 58.2
Zm00001eb148920 Zea mays HOM05D005240 ORTHO05D006471 4.9e-32 141.4 111 60.4
HPP92_007585 Vanilla planifolia HOM05D005240 ORTHO05D006471 6.4e-32 141.0 107 59.8
Ah.16g108220 Amaranthus hybridus HOM05D005240 ORTHO05D006471 1.1e-31 140.2 119 53.8
BcaB06g28875 Brassica carinata HOM05D005240 ORTHO05D006471 1.1e-31 140.2 90 74.4
Lsat_1_v5_gn_2_115080 Lactuca sativa HOM05D005240 ORTHO05D006471 1.4e-31 139.8 114 57.9
ECA238G0657 Erigeron canadensis HOM05D005240 ORTHO05D006471 2.4e-31 139.0 100 63.0
DCAR_019135 Daucus carota HOM05D005240 ORTHO05D006471 3.2e-31 138.7 126 57.1
MBI16_g46203_MAGBIO Magnolia biondii HOM05D005240 ORTHO05D006471 4.2e-31 138.3 114 62.3
CsaV3_7G024930 Cucumis sativus L. HOM05D005240 ORTHO05D006471 7.1e-31 137.5 125 49.6
DCAR_015276 Daucus carota HOM05D005240 ORTHO05D006471 9.3e-31 137.1 110 58.2
CDE07G1884 Ceratophyllum demersum HOM05D005240 ORTHO05D006471 1.6e-30 136.3 110 60.9
ECA238G3142 Erigeron canadensis HOM05D005240 ORTHO05D006471 1.6e-30 136.3 106 57.5
ATR1159G086 Amborella trichopoda HOM05D005240 ORTHO05D006471 2.1e-30 136.0 124 56.5
CAN.G492.51 Capsicum annuum HOM05D005240 ORTHO05D006471 2.7e-30 135.6 111 58.6
MELO3C023691.2 Cucumis melo HOM05D005240 ORTHO05D006471 6.0e-30 134.4 127 47.2
Mapoly0113s0026 Marchantia polymorpha HOM05D005240 ORTHO05D006471 3.9e-29 131.7 106 58.5
Ciclev10032844m.g Citrus clementina HOM05D005240 ORTHO05D006471 8.7e-29 130.6 92 63.0
Pp3c27_2400 Physcomitrium patens HOM05D005240 ORTHO05D006471 1.1e-28 130.2 117 53.8
Sed0009768 Sechium edule HOM05D005240 ORTHO05D006471 3.3e-28 128.6 113 50.4
PSO170G1537 Papaver somniferum HOM05D005240 ORTHO05D006471 4.3e-28 128.3 107 57.9
SalBow3G0637 Salvia bowleyana HOM05D005240 ORTHO05D006471 4.3e-28 128.3 88 68.2
AagrBONN_evm.TU.Sc2ySwM_117.2297 Anthoceros agrestis HOM05D005240 ORTHO05D006471 5.6e-28 127.9 109 52.3
COL.COLO4_23732 Corchorus olitorius HOM05D005240 ORTHO05D006471 7.4e-28 127.5 100 63.0
Haze_16935 Corylus avellana HOM05D005240 ORTHO05D006471 7.4e-28 127.5 94 64.9
AUR62020787 Chenopodium quinoa HOM05D005240 ORTHO05D006471 1.6e-27 126.3 119 51.3
Oeu057235.1 Olea europaea HOM05D005240 ORTHO05D006471 1.6e-27 126.3 91 60.4
Aa31LG7G14930 Aethionema arabicum HOM05D005240 ORTHO05D006471 2.8e-27 125.6 107 63.6
PSO210G3376 Papaver somniferum HOM05D005240 ORTHO05D006471 3.7e-27 125.2 110 50.9
SGA_v2.0_scaffold122G33245 Striga asiatica HOM05D005240 ORTHO05D006471 4.8e-27 124.8 93 62.4
Rhsim10G0162300 Rhododendron simsii HOM05D005240 ORTHO05D006471 8.2e-27 124.0 91 62.6
CBR_g12600 Chara braunii HOM05D005240 ORTHO05D006471 6.9e-26 120.9 118 47.5
Aa31LG7G14960 Aethionema arabicum HOM05D005240 ORTHO05D006471 1.5e-25 119.8 93 65.6
FAN01G3056 Fragaria x ananassa HOM05D005240 ORTHO05D006471 1.5e-25 119.8 86 68.6
AUR62043640 Chenopodium quinoa HOM05D005240 ORTHO05D006471 1.0e-24 117.1 106 52.8
SMO147G0062 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.7e-24 116.3 113 49.6
SMO330G0010 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 2.2e-24 115.9 113 49.6
SMO330G0050 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 2.2e-24 115.9 113 49.6
SMO330G0038 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 2.9e-24 115.5 113 49.6
Sc09g0006770 Simmondsia chinensis HOM05D005240 ORTHO05D006471 3.8e-24 115.2 90 62.2
ClCG09G009820 Citrullus lanatus HOM05D005240 ORTHO05D006471 4.9e-24 114.8 76 64.5
SMO257G0002 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 6.5e-24 114.4 113 48.7
SMO330G0030 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.1e-23 113.6 113 48.7
Sed0007370 Sechium edule HOM05D005240 ORTHO05D006471 3.5e-22 108.6 124 41.9
PSO210G2334 Papaver somniferum HOM05D005240 ORTHO05D006471 4.6e-22 108.2 91 54.9
SMO147G0059 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 4.3e-20 101.7 108 45.4
Cre08.g378650 Chlamydomonas reinhardtii HOM05D005240 ORTHO05D006471 1.2e-17 93.6 101 46.5
SMO330G0006 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 6.5e-16 87.8 108 44.4
MCO11G764 Micromonas commoda HOM05D005240 ORTHO05D006471 2.5e-15 85.9 101 42.6
PRCOL_00006731 Prasinoderma coloniale HOM05D005240 ORTHO05D006471 3.3e-12 75.5 112 36.6
CAN.G1302.2 Capsicum annuum HOM05D005240 ORTHO05D115732 4.8e-11 71.6 99 42.4
arahy.Tifrunner.gnm1.ann1.65Y6VJ Arachis hypogaea HOM05D005240 ORTHO05D006471 2.4e-10 69.3 106 37.7
Nitab4.5_0011688g0030 Nicotiana tabacum HOM05D005240 ORTHO05D006471 1.7e-08 63.2 95 36.8
arahy.Tifrunner.gnm1.ann1.ZWA97R Arachis hypogaea HOM05D005240 ORTHO05D006471 8.5e-08 60.8 69 37.7


User provided reference genes

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