Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR129910 Cardamine hirsuta HOM05D003010 ORTHO05D003623 1.7e-42 175.6 92 100.0
Carub.0004s1739 Capsella rubella HOM05D003010 ORTHO05D003623 5.5e-33 144.1 92 82.6
Thhalv10017475m.g Eutrema salsugineum HOM05D003010 ORTHO05D003623 9.4e-33 143.3 95 83.2
C03p22900 Brassica napus HOM05D003010 ORTHO05D003623 1.8e-31 139.0 85 83.5
AL4G31750 Arabidopsis lyrata HOM05D003010 ORTHO05D003623 4.0e-31 137.9 92 78.3
AT2G35658 Arabidopsis thaliana HOM05D003010 ORTHO05D003623 8.8e-31 136.7 92 78.3
BcaC01g05717 Brassica carinata HOM05D003010 ORTHO05D003623 2.2e-29 132.1 93 78.5
BcaB01g03891 Brassica carinata HOM05D003010 ORTHO05D003623 2.8e-29 131.7 86 79.1
BolC3t14689H Brassica oleracea HOM05D003010 ORTHO05D003623 6.1e-24 114.0 79 78.5
A03p19640 Brassica napus HOM05D003010 ORTHO05D003623 2.3e-23 112.1 79 75.9
BraA03t11217Z Brassica rapa HOM05D003010 ORTHO05D003623 2.3e-23 112.1 79 75.9
Sp4g17920 Schrenkiella parvula HOM05D003010 ORTHO05D003623 1.5e-22 109.4 68 86.8
Aa31LG9G15070 Aethionema arabicum HOM05D003010 ORTHO05D003623 3.4e-22 108.2 85 69.4
BcaNung00140 Brassica carinata HOM05D003010 ORTHO05D003623 2.8e-21 105.1 95 65.3
Thhalv10026660m.g Eutrema salsugineum HOM05D003010 ORTHO05D003623 1.1e-20 103.2 85 67.1
BraA01t01964Z Brassica rapa HOM05D000001 ORTHO05D009942 4.1e-20 101.3 91 62.6
BcaC09g50429 Brassica carinata HOM05D003010 ORTHO05D003623 9.1e-20 100.1 84 69.0
BolC1t02502H Brassica oleracea HOM05D000001 ORTHO05D000003 9.1e-20 100.1 88 65.9
Carub.0007s2449 Capsella rubella HOM05D003010 ORTHO05D003623 1.7e-18 95.9 90 57.8
A08p12780 Brassica napus HOM05D003010 ORTHO05D003623 2.1e-16 89.0 89 58.4
BcaC07g38027 Brassica carinata HOM05D001429 ORTHO05D001420 8.0e-16 87.0 84 60.7
BraA08t33266Z Brassica rapa HOM05D003010 ORTHO05D003623 1.0e-15 86.7 84 60.7
AT4G16840 Arabidopsis thaliana HOM05D003010 ORTHO05D003623 4.0e-15 84.7 89 56.2
Aa31LG2G13030 Aethionema arabicum HOM05D000001 ORTHO05D000003 6.8e-15 84.0 83 56.6
BcaB04g18394 Brassica carinata HOM05D001429 ORTHO05D001420 8.8e-15 83.6 84 59.5
Sc01g0008150 Simmondsia chinensis HOM05D003010 ORTHO05D003623 9.8e-14 80.1 89 50.6
TWI81G0439 Tripterygium wilfordii HOM05D003010 ORTHO05D003623 2.2e-13 79.0 89 52.8
BolC8t48419H Brassica oleracea HOM05D003010 ORTHO05D003623 4.9e-13 77.8 90 54.4
EL10Ac5g12296 Beta vulgaris HOM05D003010 ORTHO05D003623 1.1e-12 76.6 91 50.5
CARHR223470 Cardamine hirsuta HOM05D003010 ORTHO05D003623 1.8e-12 75.9 83 55.4
Prupe.5G059800 Prunus persica HOM05D003010 ORTHO05D003623 1.8e-12 75.9 87 50.6
Duzib205G1418 Durio zibethinus HOM05D003010 ORTHO05D003623 2.4e-12 75.5 90 52.2
COL.COLO4_21678 Corchorus olitorius HOM05D003010 ORTHO05D003623 3.1e-12 75.1 85 52.9
Gohir.D08G184800 Gossypium hirsutum HOM05D003010 ORTHO05D003623 1.2e-11 73.2 89 47.2
Hund11331 Selenicereus undatus HOM05D003010 ORTHO05D003623 1.2e-11 73.2 99 46.5
Ah.12g054120 Amaranthus hybridus HOM05D003010 ORTHO05D003623 1.6e-11 72.8 94 46.8
Gorai.004G194100 Gossypium raimondii HOM05D003010 ORTHO05D003623 3.5e-11 71.6 89 46.1
Manes.01G086500 Manihot esculenta HOM05D003010 ORTHO05D003623 3.5e-11 71.6 70 52.9
Potri.003G081900 Populus trichocarpa HOM05D003010 ORTHO05D003623 3.5e-11 71.6 86 48.8
Thecc.03G243800 Theobroma cacao HOM05D003010 ORTHO05D003623 3.5e-11 71.6 86 53.5
Gohir.A08G165900 Gossypium hirsutum HOM05D003010 ORTHO05D003623 4.5e-11 71.2 95 47.4
MD06G1049300 Malus domestica HOM05D003010 ORTHO05D003623 4.5e-11 71.2 91 46.2
Sabra03G0052800 Salix brachista HOM05D003010 ORTHO05D003623 5.9e-11 70.9 89 44.9
Haze_07981 Corylus avellana HOM05D003010 ORTHO05D003623 7.8e-11 70.5 85 47.1
Migut.A01045 Erythranthe guttata HOM05D003010 ORTHO05D003623 7.8e-11 70.5 91 48.4
Hund14501 Selenicereus undatus HOM05D003010 ORTHO05D003623 7.8e-11 70.5 91 48.4
GSVIVG01007344001 Vitis vinifera HOM05D003010 ORTHO05D003623 7.8e-11 70.5 91 46.2
MD04G1050500 Malus domestica HOM05D003010 ORTHO05D003623 1.0e-10 70.1 88 45.5
CAN.G761.23 Capsicum annuum HOM05D003010 ORTHO05D003623 2.3e-10 68.9 91 46.2
Manes.02G043601 Manihot esculenta HOM05D003010 ORTHO05D003623 2.3e-10 68.9 89 47.2
Dinv21689 Davidia involucrata HOM05D003010 ORTHO05D003623 2.9e-10 68.6 85 52.9
Potri.001G152700 Populus trichocarpa HOM05D003010 ORTHO05D003623 2.9e-10 68.6 84 48.8
Rhsim04G0160200 Rhododendron simsii HOM05D003010 ORTHO05D003623 2.9e-10 68.6 85 47.1
Sopen08g026560 Solanum pennellii HOM05D003010 ORTHO05D003623 2.9e-10 68.6 91 42.9
Oeu017218.3 Olea europaea HOM05D003010 ORTHO05D003623 3.8e-10 68.2 85 48.2
Dinv28854 Davidia involucrata HOM05D003010 ORTHO05D003623 5.0e-10 67.8 85 48.2
TAR629G3508 Trochodendron aralioides HOM05D003010 ORTHO05D003623 6.6e-10 67.4 85 47.1
FAN04G3127 Fragaria x ananassa HOM05D003010 ORTHO05D003623 8.6e-10 67.0 45 64.4
FAN08G3583 Fragaria x ananassa HOM05D003010 ORTHO05D003623 8.6e-10 67.0 45 64.4
FAN13G2988 Fragaria x ananassa HOM05D003010 ORTHO05D003623 8.6e-10 67.0 45 64.4
RcHm_v2.0_Chr7g0204931 Rosa chinensis HOM05D003010 ORTHO05D003623 8.6e-10 67.0 89 46.1
TAR636G0256 Trochodendron aralioides HOM05D003010 ORTHO05D003623 8.6e-10 67.0 92 41.3
Actinidia02185 Actinidia chinensis HOM05D003010 ORTHO05D003623 1.1e-09 66.6 85 47.1
Ah.07g199010 Amaranthus hybridus HOM05D003010 ORTHO05D003623 1.5e-09 66.2 86 45.3
Nn1g00825 Nelumbo nucifera HOM05D003010 ORTHO05D003623 1.5e-09 66.2 87 44.8
GSVIVG01013867001 Vitis vinifera HOM05D003010 ORTHO05D003623 1.5e-09 66.2 85 43.5
CiPaw.11G070300 Carya illinoinensis HOM05D003010 ORTHO05D003623 2.5e-09 65.5 85 49.4
Atru.chr9.1234 Acer truncatum HOM05D003010 ORTHO05D003623 3.3e-09 65.1 45 64.4
Ciclev10023073m.g Citrus clementina HOM05D003010 ORTHO05D003623 3.3e-09 65.1 85 45.9
Cc08_g11590 Coffea canephora HOM05D003010 ORTHO05D003623 3.3e-09 65.1 51 52.9
Haze_22213 Corylus avellana HOM05D000255 ORTHO05D000935 4.3e-09 64.7 91 47.3
Nn6g33810 Nelumbo nucifera HOM05D003010 ORTHO05D003623 4.3e-09 64.7 87 43.7
Actinidia25899 Actinidia chinensis HOM05D003010 ORTHO05D003623 5.6e-09 64.3 88 46.6
Eucgr.E00369 Eucalyptus grandis HOM05D003010 ORTHO05D003623 5.6e-09 64.3 93 43.0
Prupe.2G271700 Prunus persica HOM05D003010 ORTHO05D003623 5.6e-09 64.3 89 44.9
Atru.chr1.925 Acer truncatum HOM05D003010 ORTHO05D003623 7.3e-09 63.9 85 47.1
MD07G1247700 Malus domestica HOM05D003010 ORTHO05D003623 7.3e-09 63.9 93 44.1
PSO063G3783 Papaver somniferum HOM05D003010 ORTHO05D003623 7.3e-09 63.9 84 47.6
PSO782G2859 Papaver somniferum HOM05D003010 ORTHO05D003623 7.3e-09 63.9 84 46.4
Solyc08g078060.3 Solanum lycopersicum HOM05D003010 ORTHO05D003623 7.3e-09 63.9 92 42.4
PGSC0003DMG400026255 Solanum tuberosum HOM05D003010 ORTHO05D003623 7.3e-09 63.9 85 43.5
Cfa013595 Carpinus fangiana HOM05D000255 ORTHO05D000935 9.5e-09 63.5 91 47.3
Glyma.01G205800 Glycine max HOM05D003010 ORTHO05D003623 9.5e-09 63.5 55 52.7
Medtr1g090200 Medicago truncatula HOM05D003010 ORTHO05D003623 9.5e-09 63.5 85 45.9
MBI04_g29855_MAGBIO Magnolia biondii HOM05D005914 ORTHO05D007361 1.2e-08 63.2 85 49.4
Glyma.10G193700 Glycine max HOM05D003010 ORTHO05D003623 1.6e-08 62.8 85 45.9
TWI39G0461 Tripterygium wilfordii HOM05D003010 ORTHO05D003623 1.6e-08 62.8 64 46.9
Glyma.20G196700 Glycine max HOM05D003010 ORTHO05D003623 2.1e-08 62.4 85 45.9
Gohir.D09G249800 Gossypium hirsutum HOM05D003010 ORTHO05D003623 2.1e-08 62.4 86 45.3
Gorai.006G274200 Gossypium raimondii HOM05D003010 ORTHO05D003623 2.1e-08 62.4 86 45.3
SalBow3G0012 Salvia bowleyana HOM05D003010 ORTHO05D003623 2.1e-08 62.4 87 46.0
SalBow3G1605 Salvia bowleyana HOM05D003010 ORTHO05D003623 2.1e-08 62.4 87 46.0
Medtr5g013240 Medicago truncatula HOM05D003010 ORTHO05D003623 2.8e-08 62.0 48 56.2
TPR.G31425 Trifolium pratense HOM05D003010 ORTHO05D003623 2.8e-08 62.0 53 50.9
FvH4_5g20070 Fragaria vesca HOM05D003010 ORTHO05D003623 3.6e-08 61.6 93 41.9
FAN18G3981 Fragaria x ananassa HOM05D003010 ORTHO05D003623 3.6e-08 61.6 93 41.9
CDE01G0248 Ceratophyllum demersum HOM05D003010 ORTHO05D003623 4.7e-08 61.2 92 40.2
Actinidia31768 Actinidia chinensis HOM05D003010 ORTHO05D003623 6.1e-08 60.8 88 45.5
Sc07g0009120 Simmondsia chinensis HOM05D003010 ORTHO05D003623 6.1e-08 60.8 93 40.9
Duzib205G1260 Durio zibethinus HOM05D003010 ORTHO05D003623 8.0e-08 60.5 89 42.7
Thecc.03G147400 Theobroma cacao HOM05D003010 ORTHO05D003623 8.0e-08 60.5 84 47.6
Lj5g0011838 Lotus japonicus HOM05D003010 ORTHO05D003623 1.0e-07 60.1 85 47.1
Nitab4.5_0009955g0020 Nicotiana tabacum HOM05D003010 ORTHO05D003623 1.0e-07 60.1 92 41.3
Actinidia01040 Actinidia chinensis HOM05D000255 ORTHO05D000935 1.4e-07 59.7 88 43.2
Peaxi162Scf00446g00412 Petunia axillaris HOM05D003010 ORTHO05D003623 1.4e-07 59.7 92 40.2
QL09p027705 Quercus lobata HOM05D003010 ORTHO05D003623 1.4e-07 59.7 84 41.7
arahy.Tifrunner.gnm1.ann1.AIXL5Y Arachis hypogaea HOM05D003010 ORTHO05D003623 1.8e-07 59.3 45 55.6
arahy.Tifrunner.gnm1.ann1.YNCC4F Arachis hypogaea HOM05D003010 ORTHO05D003623 1.8e-07 59.3 45 55.6
DCAR_004599 Daucus carota HOM05D003010 ORTHO05D003623 1.8e-07 59.3 97 40.2
Lj8C48T14 Lonicera japonica HOM05D003010 ORTHO05D003623 1.8e-07 59.3 92 44.6
Ca_10413_v3 Cicer arietinum L. HOM05D003010 ORTHO05D000523 2.3e-07 58.9 88 40.9
COL.COLO4_37328 Corchorus olitorius HOM05D000255 ORTHO05D000935 3.0e-07 58.5 86 45.3
Gohir.D03G167000 Gossypium hirsutum HOM05D003010 ORTHO05D003623 3.0e-07 58.5 85 47.1
Lalb_Chr09g0324231 Lupinus albus HOM05D003010 ORTHO05D003623 3.0e-07 58.5 77 45.5
Phvul.002G000700 Phaseolus vulgaris HOM05D003010 ORTHO05D003623 3.0e-07 58.5 47 53.2
Nitab4.5_0000500g0010 Nicotiana tabacum HOM05D003010 ORTHO05D003623 4.0e-07 58.2 92 41.3
SGA_v2.0_scaffold60G20833 Striga asiatica HOM05D003010 ORTHO05D003623 4.0e-07 58.2 86 44.2
Cc02_g04820 Coffea canephora HOM05D003010 ORTHO05D003623 5.2e-07 57.8 86 41.9
Gohir.A09G248900 Gossypium hirsutum HOM05D003010 ORTHO05D003623 5.2e-07 57.8 84 42.9
Phvul.007G138100 Phaseolus vulgaris HOM05D003010 ORTHO05D003623 5.2e-07 57.8 85 44.7
SGA_v2.0_scaffold104G30217 Striga asiatica HOM05D003010 ORTHO05D003623 5.2e-07 57.8 85 40.0
Aqoxy3G02705 Aquilegia oxysepala HOM05D003010 ORTHO05D003623 6.8e-07 57.4 45 57.8
ClCG07G017110 Citrullus lanatus HOM05D003010 ORTHO05D003623 6.8e-07 57.4 88 44.3
MELO3C017634.2 Cucumis melo HOM05D003010 ORTHO05D003623 6.8e-07 57.4 87 42.5
Dinv16875 Davidia involucrata HOM05D003010 ORTHO05D003623 6.8e-07 57.4 86 45.3
Gorai.003G176600 Gossypium raimondii HOM05D003010 ORTHO05D003623 6.8e-07 57.4 85 45.9
Lalb_Chr06g0169801 Lupinus albus HOM05D003010 ORTHO05D003623 6.8e-07 57.4 85 43.5
RcHm_v2.0_Chr1g0373521 Rosa chinensis HOM05D003010 ORTHO05D003623 6.8e-07 57.4 93 44.1
HPP92_023172 Vanilla planifolia HOM05D003010 ORTHO05D003623 6.8e-07 57.4 85 43.5
VMungo0720G1826 Vigna mungo HOM05D002495 ORTHO05D003623 6.8e-07 57.4 85 44.7
Potri.001G080500 Populus trichocarpa HOM05D003010 ORTHO05D003623 8.9e-07 57.0 45 55.6
vmacro00038 Vaccinium macrocarpon HOM05D003010 ORTHO05D003623 1.2e-06 56.6 85 42.4
Nitab4.5_0002236g0070 Nicotiana tabacum HOM05D003010 ORTHO05D003623 1.5e-06 56.2 90 44.4
CDE04G1477 Ceratophyllum demersum HOM05D003010 ORTHO05D003623 2.0e-06 55.8 93 36.6
Ciclev10007152m.g Citrus clementina HOM05D003010 ORTHO05D003623 2.0e-06 55.8 85 42.4
FAN10G3636 Fragaria x ananassa HOM05D003010 ORTHO05D003623 2.0e-06 55.8 46 56.5
Nn8g39368 Nelumbo nucifera HOM05D003010 ORTHO05D010439 2.0e-06 55.8 91 45.1
PGR042G0835 Punica granatum HOM05D003010 ORTHO05D003623 2.0e-06 55.8 86 44.2
AUR62018864 Chenopodium quinoa HOM05D003010 ORTHO05D003623 2.6e-06 55.5 36 69.4
CsaV3_4G004320 Cucumis sativus L. HOM05D003010 ORTHO05D003623 2.6e-06 55.5 87 41.4
Nitab4.5_0002211g0010 Nicotiana tabacum HOM05D003010 ORTHO05D003623 2.6e-06 55.5 93 41.9
PGR042G0596 Punica granatum HOM05D003010 ORTHO05D003623 2.6e-06 55.5 106 38.7
Solyc05g052080.1 Solanum lycopersicum HOM05D003010 ORTHO05D003623 2.6e-06 55.5 92 41.3
CiPaw.07G184100 Carya illinoinensis HOM05D003010 ORTHO05D003623 3.4e-06 55.1 91 42.9
Lsat_1_v5_gn_4_126000 Lactuca sativa HOM05D003010 ORTHO05D003623 3.4e-06 55.1 84 41.7
DCAR_009212 Daucus carota HOM05D000639 ORTHO05D005966 4.4e-06 54.7 88 40.9
Gohir.A03G005500 Gossypium hirsutum HOM05D003010 ORTHO05D003623 4.4e-06 54.7 85 44.7
CANSAT56G3417 Cannabis sativa HOM05D003010 ORTHO05D003623 5.7e-06 54.3 84 48.8
ClCG00G004980 Citrullus lanatus HOM05D003010 ORTHO05D003623 5.7e-06 54.3 88 36.4
ClCG10G002350 Citrullus lanatus HOM05D003010 ORTHO05D003623 5.7e-06 54.3 88 36.4
Lsat_1_v5_gn_2_127061 Lactuca sativa HOM05D003010 ORTHO05D003623 5.7e-06 54.3 92 42.4
Migut.F00533 Erythranthe guttata HOM05D003010 ORTHO05D003623 7.5e-06 53.9 91 40.7
Eucgr.A02926 Eucalyptus grandis HOM05D003010 ORTHO05D003623 7.5e-06 53.9 90 40.0
TPR.G13393 Trifolium pratense HOM05D003010 ORTHO05D003623 7.5e-06 53.9 94 40.4
arahy.Tifrunner.gnm1.ann1.I909QJ Arachis hypogaea HOM05D003010 ORTHO05D003623 9.8e-06 53.5 90 41.1
arahy.Tifrunner.gnm1.ann1.Y5VFEC Arachis hypogaea HOM05D003010 ORTHO05D003623 9.8e-06 53.5 90 41.1
FvH4_7g26830 Fragaria vesca HOM05D003010 ORTHO05D003623 9.8e-06 53.5 86 44.2
FAN01G3086 Fragaria x ananassa HOM05D003010 ORTHO05D003623 9.8e-06 53.5 86 44.2
FAN03G0814 Fragaria x ananassa HOM05D000255 ORTHO05D003623 9.8e-06 53.5 86 44.2
HanXRQChr10g0316761 Helianthus annuus HOM05D003010 ORTHO05D003623 9.8e-06 53.5 92 40.2


User provided reference genes

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