Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR129600 Cardamine hirsuta HOM05D006978 ORTHO05D008723 7.6e-200 700.3 348 100.0
AL4G31500 Arabidopsis lyrata HOM05D006978 ORTHO05D008723 1.5e-184 649.4 341 92.7
Sp4g17670 Schrenkiella parvula HOM05D006978 ORTHO05D008723 2.5e-179 632.1 341 90.3
AT2G35450 Arabidopsis thaliana HOM05D006978 ORTHO05D008723 3.3e-179 631.7 344 91.0
Carub.0004s1713 Capsella rubella HOM05D006978 ORTHO05D008723 1.4e-177 626.3 345 89.9
BcaC02g11649 Brassica carinata HOM05D006978 ORTHO05D008723 3.1e-177 625.2 344 89.0
Thhalv10016892m.g Eutrema salsugineum HOM05D006978 ORTHO05D008723 1.2e-176 623.2 339 89.7
C04p12730 Brassica napus HOM05D006978 ORTHO05D008723 2.2e-175 619.0 345 88.4
BcaB02g09429 Brassica carinata HOM05D006978 ORTHO05D008723 2.9e-175 618.6 346 89.3
BolC4t22921H Brassica oleracea HOM05D006978 ORTHO05D008723 9.3e-174 613.6 345 87.5
BraA05t19968Z Brassica rapa HOM05D006978 ORTHO05D008723 2.7e-173 612.1 344 87.8
A05p10300 Brassica napus HOM05D006978 ORTHO05D008723 4.6e-173 611.3 344 87.8
Aa31LG9G13360 Aethionema arabicum HOM05D006978 ORTHO05D008723 7.9e-165 583.9 357 82.4
THA.LOC104814198 Tarenaya hassleriana HOM05D006978 ORTHO05D008723 5.1e-140 501.5 343 73.2
Sabra03G0122900 Salix brachista HOM05D006978 ORTHO05D008723 5.9e-136 488.0 306 75.2
TAR371G0953 Trochodendron aralioides HOM05D006978 ORTHO05D008723 5.5e-134 481.5 340 69.7
FAN07G2913 Fragaria x ananassa HOM05D006978 ORTHO05D008723 1.2e-133 480.3 302 75.8
Duzib248G1034 Durio zibethinus HOM05D006978 ORTHO05D008723 1.6e-133 479.9 295 75.9
FvH4_4g23290 Fragaria vesca HOM05D006978 ORTHO05D008723 2.1e-133 479.6 341 70.7
QL03p051315 Quercus lobata HOM05D006978 ORTHO05D008723 2.1e-133 479.6 306 73.9
Potri.003G167600 Populus trichocarpa HOM05D006978 ORTHO05D008723 2.7e-133 479.2 316 72.5
FAN17G0898 Fragaria x ananassa HOM05D006978 ORTHO05D008723 3.6e-133 478.8 302 75.5
TWI36G1146 Tripterygium wilfordii HOM05D006978 ORTHO05D008723 4.7e-133 478.4 340 70.6
FAN12G0972 Fragaria x ananassa HOM05D006978 ORTHO05D008723 1.4e-132 476.9 341 70.4
Lj3A1073G42 Lonicera japonica HOM05D006978 ORTHO05D008723 1.4e-132 476.9 298 75.5
Dinv11704 Davidia involucrata HOM05D006978 ORTHO05D008723 1.8e-132 476.5 302 75.8
RcHm_v2.0_Chr4g0429651 Rosa chinensis HOM05D006978 ORTHO05D008723 3.0e-132 475.7 288 78.8
HanXRQChr08g0210001 Helianthus annuus HOM05D006978 ORTHO05D008723 4.0e-132 475.3 326 69.9
Cfa009396 Carpinus fangiana HOM05D006978 ORTHO05D008723 5.2e-132 474.9 308 74.0
Thecc.02G200200 Theobroma cacao HOM05D006978 ORTHO05D008723 5.2e-132 474.9 302 75.2
Nn3g16378 Nelumbo nucifera HOM05D006978 ORTHO05D008723 3.3e-131 472.2 292 75.7
Actinidia09621 Actinidia chinensis HOM05D006978 ORTHO05D008723 4.4e-131 471.9 336 69.0
CiPaw.05G106100 Carya illinoinensis HOM05D006978 ORTHO05D008723 7.5e-131 471.1 299 75.6
Hma1.2p1_0065F.1_g034960 Hydrangea macrophylla HOM05D006978 ORTHO05D008723 9.7e-131 470.7 304 74.3
GSVIVG01000920001 Vitis vinifera HOM05D006978 ORTHO05D008723 1.7e-130 469.9 292 76.7
Gorai.005G194100 Gossypium raimondii HOM05D006978 ORTHO05D008723 2.2e-130 469.5 322 71.4
Sopen01g005540 Solanum pennellii HOM05D006978 ORTHO05D008723 2.8e-130 469.2 284 76.4
PSO478G2402 Papaver somniferum HOM05D006978 ORTHO05D008723 4.8e-130 468.4 285 77.5
PGSC0003DMG400005222 Solanum tuberosum HOM05D006978 ORTHO05D008723 6.3e-130 468.0 284 76.4
Gohir.A03G149500 Gossypium hirsutum HOM05D006978 ORTHO05D008723 1.8e-129 466.5 305 73.1
Nitab4.5_0004878g0040 Nicotiana tabacum HOM05D006978 ORTHO05D008723 2.4e-129 466.1 313 70.3
PSO017G5946 Papaver somniferum HOM05D006978 ORTHO05D008723 4.1e-129 465.3 285 76.1
Solyc01g009970.3 Solanum lycopersicum HOM05D006978 ORTHO05D008723 4.1e-129 465.3 329 68.7
Prupe.1G221700 Prunus persica HOM05D006978 ORTHO05D008723 5.3e-129 464.9 307 72.6
Ciclev10031990m.g Citrus clementina HOM05D006978 ORTHO05D008723 7.0e-129 464.5 349 68.5
AUR62028894 Chenopodium quinoa HOM05D006978 ORTHO05D008723 9.1e-129 464.2 291 72.5
CSS0048975 Camellia sinensis var. sinensis HOM05D006978 ORTHO05D008723 1.2e-128 463.8 296 72.6
Gohir.D02G172400 Gossypium hirsutum HOM05D006978 ORTHO05D008723 1.2e-128 463.8 305 72.8
CAN.G373.1 Capsicum annuum HOM05D006978 ORTHO05D008723 1.6e-128 463.4 286 73.8
AUR62005659 Chenopodium quinoa HOM05D006978 ORTHO05D008723 2.7e-128 462.6 340 65.6
Aqoxy5G03257 Aquilegia oxysepala HOM05D006978 ORTHO05D008723 5.9e-128 461.5 336 66.7
CsaV3_4G002940 Cucumis sativus L. HOM05D006978 ORTHO05D008723 1.0e-127 460.7 293 73.7
Medtr7g022480 Medicago truncatula HOM05D006978 ORTHO05D008723 1.0e-127 460.7 307 72.3
Nitab4.5_0001771g0130 Nicotiana tabacum HOM05D006978 ORTHO05D008723 1.7e-127 459.9 341 66.0
Psat3g186920 Pisum sativum HOM05D006978 ORTHO05D008723 1.7e-127 459.9 330 68.2
ClCG07G015370 Citrullus lanatus HOM05D006978 ORTHO05D008723 5.0e-127 458.4 298 71.5
TPR.G2900 Trifolium pratense HOM05D006978 ORTHO05D008723 5.0e-127 458.4 292 73.6
MELO3C017748.2 Cucumis melo HOM05D006978 ORTHO05D008723 6.5e-127 458.0 288 74.0
Lj1g0015384 Lotus japonicus HOM05D006978 ORTHO05D008723 1.1e-126 457.2 336 68.5
MD16G1123900 Malus domestica HOM05D006978 ORTHO05D008723 1.1e-126 457.2 305 73.1
PGR102G2599 Punica granatum HOM05D006978 ORTHO05D008723 1.9e-126 456.4 317 69.1
arahy.Tifrunner.gnm1.ann1.2517Z7 Arachis hypogaea HOM05D006978 ORTHO05D008723 5.5e-126 454.9 297 71.4
arahy.Tifrunner.gnm1.ann1.HCE1UU Arachis hypogaea HOM05D006978 ORTHO05D008723 5.5e-126 454.9 297 71.4
EL10Ac6g13545 Beta vulgaris HOM05D006978 ORTHO05D008723 1.2e-125 453.8 298 71.5
Ca_07142_v3 Cicer arietinum L. HOM05D006978 ORTHO05D008723 1.2e-125 453.8 343 66.2
ECA233G0335 Erigeron canadensis HOM05D006978 ORTHO05D008723 1.6e-125 453.4 290 74.1
Migut.K01011 Erythranthe guttata HOM05D006978 ORTHO05D008723 2.7e-125 452.6 284 73.9
Cc11_g17300 Coffea canephora HOM05D006978 ORTHO05D008723 3.6e-125 452.2 290 73.4
VMungo1383G2882 Vigna mungo HOM05D000485 ORTHO05D000341 4.7e-125 451.8 303 71.6
CANSAT01G1132 Cannabis sativa HOM05D006978 ORTHO05D008723 1.4e-124 450.3 294 71.4
Lalb_Chr10g0092011 Lupinus albus HOM05D006978 ORTHO05D008723 1.5e-123 446.8 292 72.6
Oeu011352.1 Olea europaea HOM05D006978 ORTHO05D008723 2.6e-123 446.0 288 74.0
Atru.BG.287.p Acer truncatum HOM05D006978 ORTHO05D008723 3.7e-122 442.2 269 76.6
Eucgr.B03530 Eucalyptus grandis HOM05D006978 ORTHO05D008723 3.7e-122 442.2 334 66.2
DCAR_031207 Daucus carota HOM05D006978 ORTHO05D008723 1.1e-121 440.7 292 69.2
Glyma.18G285000 Glycine max HOM05D006978 ORTHO05D008723 2.7e-120 436.0 286 68.9
Os04g0391900 Oryza sativa ssp. japonica HOM05D006978 ORTHO05D008723 5.9e-120 434.9 284 69.7
Sc11g0000330 Simmondsia chinensis HOM05D006978 ORTHO05D008723 3.0e-116 422.5 286 68.5
Hund06110 Selenicereus undatus HOM05D006978 ORTHO05D008723 2.0e-115 419.9 298 68.1
SalBow2G2397 Salvia bowleyana HOM05D006978 ORTHO05D008723 9.8e-115 417.5 339 63.1
Peaxi162Scf00255g00025 Petunia axillaris HOM05D006978 ORTHO05D008723 4.1e-113 412.1 248 76.2
SEGI_15057 Sequoiadendron giganteum HOM05D006978 ORTHO05D008723 7.0e-113 411.4 294 66.3
vmacro16091 Vaccinium macrocarpon HOM05D006978 ORTHO05D008723 7.7e-112 407.9 353 58.6
Atru.chr11.2376 Acer truncatum HOM05D006978 ORTHO05D008723 1.0e-111 407.5 245 77.1
Mapoly0133s0049 Marchantia polymorpha HOM05D006978 ORTHO05D008723 1.0e-111 407.5 299 61.5
Sed0026660 Sechium edule HOM05D006978 ORTHO05D008723 5.0e-111 405.2 284 68.0
Haze_12456 Corylus avellana HOM05D006978 ORTHO05D008723 1.4e-108 397.1 255 73.7
Glyma.18G284800 Glycine max HOM05D006978 ORTHO05D008723 2.0e-107 393.3 337 60.8
Pp3c1_20610 Physcomitrium patens HOM05D006978 ORTHO05D008723 1.7e-106 390.2 298 60.7
ATR0582G006 Amborella trichopoda HOM05D006978 ORTHO05D008723 1.4e-105 387.1 244 72.1
Phvul.008G016700 Phaseolus vulgaris HOM05D006978 ORTHO05D008723 1.2e-104 384.0 244 74.6
Ah.02g130990 Amaranthus hybridus HOM05D006978 ORTHO05D008723 8.0e-101 371.3 292 62.7
SMO118G0021 Selaginella moellendorffii HOM05D006978 ORTHO05D008723 8.0e-101 371.3 291 58.1
CDE06G2364 Ceratophyllum demersum HOM05D006978 ORTHO05D008723 2.7e-96 356.3 289 59.5
AagrBONN_evm.TU.Sc2ySwM_117.2371 Anthoceros agrestis HOM05D006978 ORTHO05D008723 5.0e-95 352.1 283 57.2
Manes.13G007900 Manihot esculenta HOM05D006978 ORTHO05D008723 4.4e-91 339.0 252 67.9
Zm00001eb421220 Zea mays HOM05D006978 ORTHO05D008723 1.9e-78 297.0 195 71.3
MCO09G507 Micromonas commoda HOM05D006978 ORTHO05D008723 1.1e-76 291.2 292 51.7
MSTRG.476 Avicennia marina HOM05D006978 ORTHO05D008723 8.7e-63 245.0 173 68.8
Cpa.g.sc99.56 Carica papaya HOM05D006978 ORTHO05D008723 3.5e-56 223.0 144 72.9
MBI11_g38268_MAGBIO Magnolia biondii HOM05D006978 ORTHO05D008723 8.4e-50 201.8 110 80.9
Glyma.02G096500 Glycine max HOM05D006978 ORTHO05D008723 1.2e-48 198.0 114 76.3
PRCOL_00001136 Prasinoderma coloniale HOM05D006978 ORTHO05D008723 5.9e-43 179.1 285 38.2
SalBow2G1646 Salvia bowleyana HOM05D006978 ORTHO05D008723 3.8e-42 176.4 105 81.0
Hma1.2p1_0065F.1_g034970 Hydrangea macrophylla HOM05D006978 ORTHO05D008723 3.2e-41 173.3 118 73.7
Actinidia34017 Actinidia chinensis HOM05D006978 ORTHO05D008723 7.9e-32 142.1 155 51.0
MBI11_g38269_MAGBIO Magnolia biondii HOM05D006978 ORTHO05D008723 7.9e-32 142.1 108 59.3
arahy.Tifrunner.gnm1.ann1.5L80US Arachis hypogaea HOM05D006978 ORTHO05D008723 2.0e-27 127.5 85 71.8
Rhsim12G0096200 Rhododendron simsii HOM05D006978 ORTHO05D008723 2.2e-26 124.0 114 55.3
Cpa.g.sc99.55 Carica papaya HOM05D006978 ORTHO05D008723 2.5e-25 120.6 140 47.9
arahy.Tifrunner.gnm1.ann1.0RBU3Z Arachis hypogaea HOM05D006978 ORTHO05D008723 3.1e-12 77.0 55 58.2
Peaxi162Scf00255g00026 Petunia axillaris HOM05D006978 ORTHO05D008723 2.9e-10 70.5 60 58.3
MBI11_g31938_MAGBIO Magnolia biondii HOM05D006978 ORTHO05D008723 2.5e-09 67.4 49 59.2
RcHm_v2.0_Chr2g0135531 Rosa chinensis HOM05D006978 ORTHO05D008723 4.7e-08 63.2 40 70.0
MBI11_g31937_MAGBIO Magnolia biondii HOM05D006978 ORTHO05D008723 1.0e-07 62.0 42 64.3


User provided reference genes

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